LOC110534757 (LOC106602178)


Basic Information

Item Value
gene id LOC110534757
gene name LOC106602178
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3325416 ~ 3329282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953936.1
CATTCGGTTCATTTTAGTAGCACCAACAACATGATAGAGCAGCGGGTGGCAACGTTGAAAGGTAGAACTAACAAGTCGTGTGAGCAaccaattttttattttaaaaaccaacccttattttgaaaAACAATTCAGGAAGTAGCCCTAATTTTGTTTCCGGAATGAAATTCTGTGTGTGTAGTATACCGTCTACATTGTGAACTTTGAATTCTCAAAACATTGCCTGAATACTGCAAATTACTATAACATAATTGTTAAATATTTACATAGTTCCAAGGACATGTGCGATAGCGTCGCCTTTCATGCTCAGCTAGCTTCAATAATTGAGGTTTTGGCGAATGCAGCCGTTGCCGAAATCTGTAAACTTGTAGATGATGGCCATGCTGCCTTACGTATGGAAATTTCCCATAGCCAGAAAGAAATTGATAACCTGCGGAGGAAGCTGCTTTTGACAAAATACCAGAGTTCTCAACGGGGCACAGAGAAATTCGGAGCCCTGCGACGCACAGTTCACAGGCGCGACACCGATCTTGTTGCCCGAGCAAGAGCGAGCTTCGTTGGAAAGTCATCAGGCAGACATGGATATTTGGAGAATCGTTTTTCCAACAGTGAAGGGGACAACTTCACAAAGGATGTCACGAACTGGAAAGACGCAAGACGCACAGCGACAGACCAGGATGGGAGCATGCAGATGGCAGATATGCCAGAGTCACCTCTTATCAAAATGGAGAACCTTGGCTCAAGCAGAACAGAAGAGATTGTCCAACTGGTCAGTGAGAGCAGTGAGAAGATCATTGTGGCAGAACCAGGTGCTTCGTCATCTACTGAAACCACAGACCTTCTGGACCAGCAGGGCAACAGACACAGAGCTCCAGACACCTCACTCAATATTGAACCTGAAAACCAGATGTTCCAGCATCCAGCGTCACAATACAACAGAGCAAGACAGGACCATCAGGTTGCTGAGGGTGTGACCTGGGAAACTGACCATCAACCCATAGAATACAGCCTGTCCCATTGGACAGAGAACCAAGAGACTGACAGCCCAACTGTGAATGCTCCTCACAATTCTGGGCCAGACTCCAAGAGGCTGTCTGGACatccagagaggagaggggtgcctGGTAACTCAGGGGTCAGCATGTCTGCTTTGGGCTCTCTGGACTGGGTACCTGATGTGGTGCTGGTGGACTCAGTTCCCATTAAAGTGGAGGCAGATATGAGTTCAGAATGGAGCATAACTGGCCAAGAGGCGACATCTGGAGAGGTCTGTTCAGACGGTAGGCAACTTGTGGAcaacagaggaagagggggaatgGACTCTGGACAGACAGAGTGTCCCCATGACACTCAAAACACAGAGCAAGGGACAACTGTAGGATCAAGGTCCAAGATGTCAGATTTCAACAGACTGTCCTCCCTAAACAGCTTTTCATCCCCAAGTGTTACTCTCCTCCAGGTTCCCCAAAGAGGGAAGCCAGCCCCCTTCCTGAATTTCAACAGAGGCTACAATTTTTCATCGAAAGGCAAAGAAAAGCAGCAACAACAGCTGACGTCTCACTCGCCCAAGAGGCAACTCCGGTGCAGCCTCTGTGGAAAGCCCTTCCCTCAGCCGGCGCAACTGCGGAGTCATATGCGGGTCCATACGGGGGAGAAACCGTACGGCTGCAGCCACTGCACCAAGCGCTTCTCCCACCGGCACCAGCTGAAGATGCATGAGAGAGTGCACACCGGAGAGAAACCATTTCACTGTGTCTACTGTGGGAAGTGCTTCACCCAGTCTAGTCACATGAAGAGGCACCTCCTCGTCCACACTGGTGGCAGGCCACAGGACATTGTGCTGCCCTGAGTGTTCCAGGGTGAAATTTCCCcttggtacagatctaggatcagcttcctcttctccaatcctaaccttaaccattagtaggAAAACATCTAAAACTAACCCAAGATCAGTGTGGAGGGGCAACTTCACACTACTCCGCCTGGTGTAATTATAGGcaaggccaggagtttttcctcacCACGTGACCAGACctgggaaaaactcctggccctagttgTAAGGGGAATGGCTCAACACTACTGTGTTTTAATATGCATACTGGGTCTTTGTGTTTTTAACAGTTTGGATAGTTACCACATTGAACACTACCCtctgtgtgtagtggtagtgttttCAGGTCAGCTGTCTTGATGCTTGGTCCGGAGTGGATTGATAATGTATAAGTTATTACAGGTGAAGATTTTAAACATCCTTATGAATTTGTATTGGTGCAGTGGTAAACCAAAGAACAGCAATTAACAATTCAGGAAGCTCTGGACAGGTGTCTGGATGAGCTAGGCCTGTTGGTGGTCGAGAACGCATTGCTCGGTTCATCTCGTACCTGGacatagggaggaggagggtgcaGGGAAGAGTGTGATGATGACTGTCACTTTCTGGACATCGACATGGCAGAAGAGAAGAGCCACAGGTTCCCTGGGTGCCAGCACACTCCTGGCCCTTGAAACAGATCTGGCGACCCAGCAGGTGCATGGCGAGAGTGCTGACCTGGAATGAATCCCCAGAGGTACCATGGTCTGGGGAAACCTAATCTCCTGGAGCTTCCTCTGGAGTCGCTGGTGTGGATCTTCTGGGATGTGCTGCGTGTGGACGGGAAGAGAGGCTGCTGGAACCTGTCTCTGGTAGCGGAACCTTCCGTACCATCCTgagaaagctgtcatcaaggcaaagagtggctgctttgaagaatatttattttatattatattaactattttttaattactttaattacttttaattattttatgttaattcatagttttgatgtcttcaccattattctacaatgtaaaaaatagtaaaaataaagaaaaacccttgaatgag

Function

NR:

description
B-cell CLL/lymphoma 6 member B protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953936.1 True 2899 mRNA 0.47 6 3325416 3329282

Neighbor

gene id symbol gene type direction distance location
LOC110534763 LOC106610379 coding upstream 7975 3314868 ~ 3317441 (+)
LOC110534750 ma7d1 coding upstream 10591 3309693 ~ 3314825 (+)
LOC110513657 LOC106592508 coding upstream 17188 3303563 ~ 3308228 (+)
LOC110519316 LOC106610378 coding upstream 29885 3290812 ~ 3295531 (+)
trnae-cuc-374 NA coding upstream 35299 3290046 ~ 3290117 (+)
LOC110534760 LOC106610383 coding downstream 3300 3332582 ~ 3344863 (+)
LOC110534762 LOC106602177 coding downstream 17066 3346348 ~ 3348947 (+)
LOC118941411 NA coding downstream 20476 3349758 ~ 3355397 (+)
LOC110497283 LOC106602255 coding downstream 28530 3357812 ~ 3361295 (+)
LOC110497278 LOC106602183 coding downstream 77191 3406473 ~ 3457336 (+)
G1583783 NA non-coding upstream 34950 3290257 ~ 3290466 (+)
G1583686 NA non-coding upstream 132187 3191892 ~ 3193229 (+)
G1583675 NA non-coding upstream 171214 3153879 ~ 3154202 (+)
LOC110510463 LOC106590758 non-coding upstream 205522 3105399 ~ 3128798 (+)
G1583817 NA non-coding downstream 33369 3362651 ~ 3363004 (+)
G1583840 NA non-coding downstream 48794 3378076 ~ 3378327 (+)
G1583841 NA non-coding downstream 49090 3378372 ~ 3378600 (+)
G1583830 NA non-coding downstream 62070 3391352 ~ 3392600 (+)
LOC110517772 LOC106610548 other upstream 253773 3032473 ~ 3091701 (+)
LOC118941397 LOC106601386 other upstream 434610 2888963 ~ 3003056 (+)
G1583215 NA other upstream 510122 2765199 ~ 2815294 (+)
LOC110518136 LOC106592283 other upstream 521985 2770293 ~ 2811692 (+)
G1583003 NA other upstream 1124543 2198928 ~ 2200873 (+)
LOC110534752 LOC106602173 other downstream 103434 3416203 ~ 3445744 (+)
LOC110497289 LOC106610394 other downstream 154364 3483359 ~ 3492477 (+)
LOC110497294 LOC106602191 other downstream 288556 3609578 ~ 3622792 (+)
G1583951 NA other downstream 311367 3640649 ~ 3642876 (+)
LOC118941415 LOC106602193 other downstream 358886 3687991 ~ 3692012 (+)

Expression


Co-expression Network