LOC118941411


Basic Information

Item Value
gene id LOC118941411
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3349758 ~ 3355397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037629.1
ATCTTACATAGAACAACCAGAAAATCACTTTCCTTTCCTAATATCAGCATTTGAAACCGCTCACTTTGTTTTGGATTCTCCATACATGATTCTACTGAAAACAACGTTTAGATGACCATTCATTTAATACATATACTTATATAAGGATGATTCCTCACAAAACTagaacacttttttttttcatgAAATGCAATCTGTAGAATGTtcctttggaggaaggattgttgGGATATATTTGACATTTAACTTAAAGCATAGTTGAAAAGTATTTAATTGAAGTTGGAATATTTGTTGCTATGTTGTtgccttaggtctctctttatgttgtctCTTGTCGCAATGTTTTTTCTTATATTTCTGtgttatatatacatatatatttacaatttttaatcccagcccacGTCCCCGCACGAGGTCTTTTGCCTcaccgtcattgtgaataagaatttgttcttaactgacctgcctagctaaataaaataaatacaaaaaaatagtGACATTTTGGCCTTACCAGGCCTCCTTTAAGAGTAAATATTTCAGTTGTAGGTGCTACAAAGCAACATTTGGTGTCATATTCAACTTTACTGCTTGCTCTGTTATATGAGTAGTATTTTGATTGCAATAACACATTTTTGACATtctttttacacgcttcagcactcggcggtcctgttctgtgagcttgtggggCCTCCCACTTCacagccattgttgctcctagatggtttccacttcacaataactgcaCTTAAGAGTTGAGCAGGGCAGAtatgtgatgaactgacttgttggaaaggtgccattctatgatggtgccacattgaaagtcactgagcccttcagtaaggccattcttttGCAACTGTGCCTATGGAGATTGTATacaagggtgtggctgaaatagccaaatccaatcATTTGAAGGGGTGACCACATAcctttgtgtgtatatatagtgcattatTTCCCATGTTTATAGCCAATAGGCTATAAAGGCCAGGGGCAGTTGTGTAATTCAAAtaaaaccagagaggaagaggcgaattTGTAAGACAAGAAGACATTGCAAGATGCAGATTACCAAAACAGAGCACGCTTCTGCCTTCTGCTTCTCTCgttcacgctggcctgcctgtcTCTTCGCTAATGATGCTAGTTAGTGTGTGTTCAGTCTTTGGTCTGTTGCGTGAAGAATATCCTAGCCAATTCATGGCACCGATTTTTACAGTCAGTCTTGCTGGTACGAGGTAGTCTACTCGAACTTTTTGTCTCATATGAAATTTTAGTAGACTTCCGGTAGCCTGCATCGATTACGCTTTTCAGACATAATGGAATGTGACCCCTTCAAATCCCGTCGGCTACTGCAtgtttgtttctctgtctgttaggCTTCTGGAGTCACTGGTGTGGATCCTCCGGAATGTGTTGCGTGTGGATGGGAAGACAGGCTCCTGGAACCTGTCTCTGGACTGCAGAACCTTACTACACACCATCTtgacaaataaaacaaatcagGACATTCTCCACAGGGAAGTCGTTACTGAAAGGAGGAGAAGCCAGTACATTGTGGTTACAGGTTACTGTGAAGGACAACATGAACCATTATATGCTCACCACATGCTTGCTGCGCTACCTACACCCATATTACCAATGTTGTTATTAttacaaatgtttatttttatttacaattgtaatttattgtaaaaacaaaaggCAATGTTTAGCTATTACCCAGGACAATAAGAAATCCCATTGGCTATTTAGCCATTCTATAGCCAGATATTTAAAtatttatactgttacattggtcaGCGTTAGAATGCATTCTGAGTGTGGTGCTTCGGTTAGTTTTCAGACTACTAACCCTAGCCTACTATTCAATTGATTTACTTTAAATTGAAGGAATGTATTTATTCcctttaaattcaggttgtatgCTGATTCTGTATTTTTCTACGTGAACCAAATAGTAAAATAATCATATTTGGAGGACAAAGTGTTTGTTTTAATTAACTTCATTGAAAGTCAAAAGGCTGATTTTTGTAACATTTGATTCCTTTCAGTCGCTACAATATGATACAGCAGCAGGTAGCAATGTTGGAACTAACATAAGTTGCGTGTAACCAATCTTTATTTTGAAATCTCACCTTTATTTTGAAAAACGATCCACTAAGTAGAAGACATTTTTTTGTTTCcggaacaaaaataaacaaaaaagagAACCTGCgagaagctagccacaataaggactagccacaatagtggaatttacgggttgtcttcaaaataaaagctccCATTTGACTGACTTCAAACTGATACAAGTGGATTCCTTGGGTGCGtatgtaaattcactctggctatctactctgatttcagaacACTCTCGTTCGAGtatgccagagcacagaataactgaggCTACTAACACGCAACACTAGTTGAATATGACGGGTGTCAGTAAAGGTTGACAAAAACCATTATTCAATTGTTGCTAGCAGCACTGTTAGTCACTaatgctctagataacatgaa
>XR_005037628.1
CACGAAACCTTATCTGGTGATATGAATGGATATTTTATTTGTCTGTAAAGGAATGCCATTATGCCGCTTCTGAAGCAGGACTAAGATCCATCACTATGCAACCAGAACTATCAATCAAATAATTGCTGCCTGCGCGCAGTCCACTCTCCTAAAAAAACTGACTAACGTTTGTTAAATACCGTAATTTACCGAGACATGTTGTAGAAATAAAACGCATCTAGCTACCATAccataaaaaaagaaaaatcagcgatgtttattgttgtctggggaaaaaaatacagtacattttacaCCGGAGCAGAATTATACTGGCTGAAAAGGTACAGACAGACCTGATGCGGCACTTTTTTTTTATAGTCTGAAAAGTTATCAATTGGAACTATCTGTAGCTGCGTTCTACGTCTGTAAAGGGTGGCTGTATATATAACTTCATTTGCTGGCCCTGGCGGTCATACATAGTTAATAGGACCATTATTCTGCATTGTAAATGAACgtgttattttatatatttttttcttatcgTTTTAACGGAAAAACTATATAAAAATGGCCGTTTAAACATTGAGCAAAATTGTCCAGTTGTCACATCCTTAATTCAAAGTATACTATTTTTTTTATTGGGCTTGTTTTTTACAATTATTGTCAAACGTACTTTACAGGAAAATCAAAGTTGTGGTAGTTTTACATTTATGTCCCATTTTATACAGATAAATTGGCAatgtaaccaatcacagccctcctttTACGTCTATCATTGCACATCCTGCAAATCACTAGCAGAgggcgaccattttgaatccaatTTCACATTCACGCTCTTGGAAATGCTTAAAAATGTCATCATAAAAGCAGCAGAGATCCCACTCTGGATCTTTGGTATGCACCGACAAATGACATAATATGGAGTCTTGCAGGAGTCCTGGCTTCTGGAGTCACTGGTGTGGATCCTCCGGAATGTGTTGCGTGTGGATGGGAAGACAGGCTCCTGGAACCTGTCTCTGGACTGCAGAACCTTACTACACACCATCTtgacaaataaaacaaatcagGACATTCTCCACAGGGAAGTCGTTACTGAAAGGAGGAGAAGCCAGTACATTGTGGTTACAGGTTACTGTGAAGGACAACATGAACCATTATATGCTCACCACATGCTTGCTGCGCTACCTACACCCATATTACCAATGTTGTTATTAttacaaatgtttatttttatttacaattgtaatttattgtaaaaacaaaaggCAATGTTTAGCTATTACCCAGGACAATAAGAAATCCCATTGGCTATTTAGCCATTCTATAGCCAGATATTTAAAtatttatactgttacattggtcaGCGTTAGAATGCATTCTGAGTGTGGTGCTTCGGTTAGTTTTCAGACTACTAACCCTAGCCTACTATTCAATTGATTTACTTTAAATTGAAGGAATGTATTTATTCcctttaaattcaggttgtatgCTGATTCTGTATTTTTCTACGTGAACCAAATAGTAAAATAATCATATTTGGAGGACAAAGTGTTTGTTTTAATTAACTTCATTGAAAGTCAAAAGGCTGATTTTTGTAACATTTGATTCCTTTCAGTCGCTACAATATGATACAGCAGCAGGTAGCAATGTTGGAACTAACATAAGTTGCGTGTAACCAATCTTTATTTTGAAATCTCACCTTTATTTTGAAAAACGATCCACTAAGTAGAAGACATTTTTTTGTTTCcggaacaaaaataaacaaaaaagagAACCTGCgagaagctagccacaataaggactagccacaatagtggaatttacgggttgtcttcaaaataaaagctccCATTTGACTGACTTCAAACTGATACAAGTGGATTCCTTGGGTGCGtatgtaaattcactctggctatctactctgatttcagaacACTCTCGTTCGAGtatgccagagcacagaataactgaggCTACTAACACGCAACACTAGTTGAATATGACGGGTGTCAGTAAAGGTTGACAAAAACCATTATTCAATTGTTGCTAGCAGCACTGTTAGTCACTaatgctctagataacatga
>TU1813227
TTGTCAAACGTACTTTACAGGAAAATCAAAGTTGTGGTAGTTTTACATTTATGTCCCATTTTATACAGATAAATTGGCAatgtaaccaatcacagccctcctttTACGTCTATCATTGCACATCCTGCAAATCACTAGCAGAgggcgaccattttgaatccaatTTCACATTCACGCTCTTGGAAATGCTTAAAAATGTCATCATAAAAGCAGCAGAGATCCCACTCTGGATCTTTGGTATGCACCGACAAATGACATAATATGGAGTCTTGCAGGAGTCCTGGCTTCTGGAGTCACTGGTGTGGATCCTCCGGAATGTGTTGCGTGTGGATGGGAAGACAGGCTCCTGGAACCTGTCTCTGGACTGCAGAACCTTACTACACACCATCTtgacaaataaaacaaatcagGACATTCTCCACAGGGAAGTCGTTACTGAAAGGAGGAGAAGCCAGTACATTGTGGTTACAGGTTACTGTGAAGGACAACATGAACCATTATATGCTCACCACATGCTTGCTGCGCTACCTACACCCATATTACCAATGTTGTTATTAttacaaatgtttatttttatttacaattgtaatttattgtaaaaacaaaaggCAATGTTTAGCTATTACCCAGGACAATAAGAAATCCCATTGGCTATTTAGCCATTCTATAGCCAGATATTTAAAtatttatactgttacattggtcaGCGTTAGAATGCATTCTGAGTGTGGTGCTTCGGTTAGTTTTCAGACTACTAACCCTAGCCTACTATTCAATTGATTTACTTTAAATTGAAGGAATGTATTTATTCcctttaaattcaggttgtatgCTGATTCTGTATTTTTCTACGTGAAC

Function

NR:

description
uncharacterized protein LOC110513535, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037629.1 False 2541 mRNA 0.38 3 3349758 3355397
XR_005037628.1 False 2071 mRNA 0.37 3 3351186 3355396
TU1813227 True 858 lncRNA 0.38 3 3351828 3354825

Neighbor

gene id symbol gene type direction distance location
LOC110534762 LOC106602177 coding upstream 811 3346348 ~ 3348947 (+)
LOC110534760 LOC106610383 coding upstream 4895 3332582 ~ 3344863 (+)
LOC110534757 LOC106602178 coding upstream 20476 3325416 ~ 3329282 (+)
LOC110534763 LOC106610379 coding upstream 32317 3314868 ~ 3317441 (+)
LOC110534750 ma7d1 coding upstream 34933 3309693 ~ 3314825 (+)
LOC110497283 LOC106602255 coding downstream 2415 3357812 ~ 3361295 (+)
LOC110497278 LOC106602183 coding downstream 51076 3406473 ~ 3457336 (+)
LOC110534752 LOC106602173 coding downstream 60806 3416203 ~ 3445744 (+)
LOC110497286 LOC106610388 coding downstream 102025 3457422 ~ 3462567 (+)
LOC110497285 LOC106602172 coding downstream 107261 3462658 ~ 3470625 (+)
G1583783 NA non-coding upstream 59292 3290257 ~ 3290466 (+)
G1583686 NA non-coding upstream 156529 3191892 ~ 3193229 (+)
G1583675 NA non-coding upstream 195556 3153879 ~ 3154202 (+)
LOC110510463 LOC106590758 non-coding upstream 229864 3105399 ~ 3128798 (+)
G1583817 NA non-coding downstream 7254 3362651 ~ 3363004 (+)
G1583840 NA non-coding downstream 22679 3378076 ~ 3378327 (+)
G1583841 NA non-coding downstream 22975 3378372 ~ 3378600 (+)
G1583830 NA non-coding downstream 35955 3391352 ~ 3392600 (+)
G1583825 NA non-coding downstream 83515 3438912 ~ 3444191 (+)
LOC110517772 LOC106610548 other upstream 278115 3032473 ~ 3091701 (+)
LOC118941397 LOC106601386 other upstream 458952 2888963 ~ 3003056 (+)
G1583215 NA other upstream 534464 2765199 ~ 2815294 (+)
LOC110518136 LOC106592283 other upstream 546327 2770293 ~ 2811692 (+)
G1583003 NA other upstream 1148885 2198928 ~ 2200873 (+)
LOC110497289 LOC106610394 other downstream 128249 3483359 ~ 3492477 (+)
LOC110497294 LOC106602191 other downstream 262441 3609578 ~ 3622792 (+)
G1583951 NA other downstream 285252 3640649 ~ 3642876 (+)
LOC118941415 LOC106602193 other downstream 332771 3687991 ~ 3692012 (+)

Expression


Co-expression Network