LOC110497286 (LOC106610388)


Basic Information

Item Value
gene id LOC110497286
gene name LOC106610388
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3457422 ~ 3462567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953963.1
GGAAGTAGATGGTTTAACCCCGGAAAAGGGTATTGCGCGGGTTTGAGAAAGACCCCTGTTGATGAACAGCAGGATGAAGACGAGGCCAGCGGTGCTGATATGGAAGATGATCCCATGGACCACGATGATCTCACAGGTCATGATGATTACACTCCACCACTGTTACCGATGTCATCGCAAGGACCATCACAGCCTGTTAAACCAAAGACCACATCCTCTCTGGTTAAGCTTACGGAAGATGAGGTGCACCATTCGATTGTTCCTGTCAATTCTCTACTATCACTCACAAGATGCACAACCTGCTGCAAATTGTTCCACTGTCCACTTTGTCTCAGCTTTAAACCAACCAAACGCTCAGGATTACAGCGCCATGTTGATGTGCACCTGAAAAATGCAGTGTCCTTCAAAGATAAAAAGATTTGTAAATGCAATTTGGACTGTAGGACAGATGGCCATTATCACTGCCCCCAGTGTGAGAGAACTATCATCAGGAGGGATGCCATGACAAGTCATCTGCTGTTGTGTCAAGGGGCTTCAGCTCCTGTTTCATCAGCTGCACTGCCCTCTACGCATGCTGTACTGCCCACGCCTGCTGTAAACCAGCGTATTAAAATCACCACCCATATCCAACTGCCTCATAGTCCAGCCTATAGGACTCTGACGACTATGTGTGATCACTGTGGCTTTGTGCTCCTGAGAAAGAACTTGAAGCAGCACCTGCTGAGGAAACACCCGGAGATAGCCACTCCATTGGAGGGAGCACAATCAGATCCTGTGTCTGTGGCACAACAACACGGCACCATGAAACATGCTGAAGGGACCAGGCGGAGACGGAGACTGACCGCCACCTGCACCATATGTGGGCGTCCGGTGACCATGAAGAACATGCGAGCACACATGAACAGAAAACACCCTGATTCCTGGTAGATGCCTGCTTTGCAAACAGAGGCAttctagcctgatcccagatctgtttgtgcttttgccTTTTGTCATTGAGAAGCAAAACAATTTGGCCAAGAAAAAGAGTATAAGGAGTAGAATGTTAGCAAAACAGGTTCTGGATTTCAGGATATAGGCTTCATGCATCAACTACTTAATTGATGGCTGAATTCTATTATATATTGTTTTATAACAAATCTTGTACATTCatgttgtatatattttttaccataCAAATGGAGAAAATTGCATTTGTTAATCTGACCCTTCAGTTTATTGGGTTACGGTTATGACCTGGCTGCCAGTTCCATTTCCAAGGCCTGAGTGCTGGTCTTGCAAACAAGCACAACAAACAATTGGGGAGGAAAACTAtaaacattttgttattttgaacATTTCTTGCAGTCTCCATAACTTGTTAAAGTTGACTATTGTACAAAGTATGTTGAAAAGCTGGGGAATCATGCTCCACTCACTCACACCAAACAATGGTGGTTCAAATCTAGGCTGTTATAATCAAGTTATTTAGCTTAGAATGTTATAGCTGTAGAAAGGTACATAGCAGCTCATAAGATCAAGAGGATGAGAATGTTTGAAAGTTTGTTCAGGCAGTTTGTCTTATTTTTGTTtagtgggagagagaaaaaacgCCACTTATGCTGTTGGGAAATTTTGTATTAATATTTTGAGTATCAAATAAATTCAACAAAATATGTAA
>XM_036953964.1
CGGGTAAgtttgtttgctagctagcctGCTTAGTAAGGTTGGCTTCATAGCAATCACagaaaaataaagtggtgacagCTGCATAGAAGTTTGAGAAAGACCCCTGTTGATGAACAGCAGGATGAAGACGAGGCCAGCGGTGCTGATATGGAAGATGATCCCATGGACCACGATGATCTCACAGGTCATGATGATTACACTCCACCACTGTTACCGATGTCATCGCAAGGACCATCACAGCCTGTTAAACCAAAGACCACATCCTCTCTGGTTAAGCTTACGGAAGATGAGGTGCACCATTCGATTGTTCCTGTCAATTCTCTACTATCACTCACAAGATGCACAACCTGCTGCAAATTGTTCCACTGTCCACTTTGTCTCAGCTTTAAACCAACCAAACGCTCAGGATTACAGCGCCATGTTGATGTGCACCTGAAAAATGCAGTGTCCTTCAAAGATAAAAAGATTTGTAAATGCAATTTGGACTGTAGGACAGATGGCCATTATCACTGCCCCCAGTGTGAGAGAACTATCATCAGGAGGGATGCCATGACAAGTCATCTGCTGTTGTGTCAAGGGGCTTCAGCTCCTGTTTCATCAGCTGCACTGCCCTCTACGCATGCTGTACTGCCCACGCCTGCTGTAAACCAGCGTATTAAAATCACCACCCATATCCAACTGCCTCATAGTCCAGCCTATAGGACTCTGACGACTATGTGTGATCACTGTGGCTTTGTGCTCCTGAGAAAGAACTTGAAGCAGCACCTGCTGAGGAAACACCCGGAGATAGCCACTCCATTGGAGGGAGCACAATCAGATCCTGTGTCTGTGGCACAACAACACGGCACCATGAAACATGCTGAAGGGACCAGGCGGAGACGGAGACTGACCGCCACCTGCACCATATGTGGGCGTCCGGTGACCATGAAGAACATGCGAGCACACATGAACAGAAAACACCCTGATTCCTGGTAGATGCCTGCTTTGCAAACAGAGGCAttctagcctgatcccagatctgtttgtgcttttgccTTTTGTCATTGAGAAGCAAAACAATTTGGCCAAGAAAAAGAGTATAAGGAGTAGAATGTTAGCAAAACAGGTTCTGGATTTCAGGATATAGGCTTCATGCATCAACTACTTAATTGATGGCTGAATTCTATTATATATTGTTTTATAACAAATCTTGTACATTCatgttgtatatattttttaccataCAAATGGAGAAAATTGCATTTGTTAATCTGACCCTTCAGTTTATTGGGTTACGGTTATGACCTGGCTGCCAGTTCCATTTCCAAGGCCTGAGTGCTGGTCTTGCAAACAAGCACAACAAACAATTGGGGAGGAAAACTAtaaacattttgttattttgaacATTTCTTGCAGTCTCCATAACTTGTTAAAGTTGACTATTGTACAAAGTATGTTGAAAAGCTGGGGAATCATGCTCCACTCACTCACACCAAACAATGGTGGTTCAAATCTAGGCTGTTATAATCAAGTTATTTAGCTTAGAATGTTATAGCTGTAGAAAGGTACATAGCAGCTCATAAGATCAAGAGGATGAGAATGTTTGAAAGTTTGTTCAGGCAGTTTGTCTTATTTTTGTTtagtgggagagagaaaaaacgCCACTTATGCTGTTGGGAAATTTTGTATTAATATTTTGAGTATCAAATAAATTCAACAAAATATGTAA
>XM_036953962.1
tacTTCttaaatgtgtttgagccaatcaggtctgttgtgacaaggtaggggtggtatacagaagatagcccgatTTGATAAAACACGAAGtcccatattatgGTTTGAGAAAGACCCCTGTTGATGAACAGCAGGATGAAGACGAGGCCAGCGGTGCTGATATGGAAGATGATCCCATGGACCACGATGATCTCACAGGTCATGATGATTACACTCCACCACTGTTACCGATGTCATCGCAAGGACCATCACAGCCTGTTAAACCAAAGACCACATCCTCTCTGGTTAAGCTTACGGAAGATGAGGTGCACCATTCGATTGTTCCTGTCAATTCTCTACTATCACTCACAAGATGCACAACCTGCTGCAAATTGTTCCACTGTCCACTTTGTCTCAGCTTTAAACCAACCAAACGCTCAGGATTACAGCGCCATGTTGATGTGCACCTGAAAAATGCAGTGTCCTTCAAAGATAAAAAGATTTGTAAATGCAATTTGGACTGTAGGACAGATGGCCATTATCACTGCCCCCAGTGTGAGAGAACTATCATCAGGAGGGATGCCATGACAAGTCATCTGCTGTTGTGTCAAGGGGCTTCAGCTCCTGTTTCATCAGCTGCACTGCCCTCTACGCATGCTGTACTGCCCACGCCTGCTGTAAACCAGCGTATTAAAATCACCACCCATATCCAACTGCCTCATAGTCCAGCCTATAGGACTCTGACGACTATGTGTGATCACTGTGGCTTTGTGCTCCTGAGAAAGAACTTGAAGCAGCACCTGCTGAGGAAACACCCGGAGATAGCCACTCCATTGGAGGGAGCACAATCAGATCCTGTGTCTGTGGCACAACAACACGGCACCATGAAACATGCTGAAGGGACCAGGCGGAGACGGAGACTGACCGCCACCTGCACCATATGTGGGCGTCCGGTGACCATGAAGAACATGCGAGCACACATGAACAGAAAACACCCTGATTCCTGGTAGATGCCTGCTTTGCAAACAGAGGCAttctagcctgatcccagatctgtttgtgcttttgccTTTTGTCATTGAGAAGCAAAACAATTTGGCCAAGAAAAAGAGTATAAGGAGTAGAATGTTAGCAAAACAGGTTCTGGATTTCAGGATATAGGCTTCATGCATCAACTACTTAATTGATGGCTGAATTCTATTATATATTGTTTTATAACAAATCTTGTACATTCatgttgtatatattttttaccataCAAATGGAGAAAATTGCATTTGTTAATCTGACCCTTCAGTTTATTGGGTTACGGTTATGACCTGGCTGCCAGTTCCATTTCCAAGGCCTGAGTGCTGGTCTTGCAAACAAGCACAACAAACAATTGGGGAGGAAAACTAtaaacattttgttattttgaacATTTCTTGCAGTCTCCATAACTTGTTAAAGTTGACTATTGTACAAAGTATGTTGAAAAGCTGGGGAATCATGCTCCACTCACTCACACCAAACAATGGTGGTTCAAATCTAGGCTGTTATAATCAAGTTATTTAGCTTAGAATGTTATAGCTGTAGAAAGGTACATAGCAGCTCATAAGATCAAGAGGATGAGAATGTTTGAAAGTTTGTTCAGGCAGTTTGTCTTATTTTTGTTtagtgggagagagaaaaaacgCCACTTATGCTGTTGGGAAATTTTGTATTAATATTTTGAGTATCAAATAAATTCAACAAAATATGTAA

Function

NR:

description
uncharacterized protein LOC110534782 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953963.1 False 1660 mRNA 0.43 4 3457422 3462567
XM_036953964.1 False 1708 mRNA 0.43 4 3457459 3462567
XM_036953962.1 True 1722 mRNA 0.43 4 3458359 3462567

Neighbor

gene id symbol gene type direction distance location
LOC110497278 LOC106602183 coding upstream 86 3406473 ~ 3457336 (+)
LOC110534752 LOC106602173 coding upstream 11678 3416203 ~ 3445744 (+)
LOC110497283 LOC106602255 coding upstream 96127 3357812 ~ 3361295 (+)
LOC118941411 NA coding upstream 102025 3349758 ~ 3355397 (+)
LOC110534762 LOC106602177 coding upstream 108475 3346348 ~ 3348947 (+)
LOC110497285 LOC106602172 coding downstream 91 3462658 ~ 3470625 (+)
LOC110497287 LOC106610389 coding downstream 9196 3471763 ~ 3481543 (+)
LOC110497289 LOC106610394 coding downstream 20792 3483359 ~ 3492477 (+)
LOC110497290 LOC106610393 coding downstream 30175 3492742 ~ 3498731 (+)
LOC110497299 fgl1 coding downstream 44737 3507304 ~ 3516455 (+)
G1583825 NA non-coding upstream 13231 3438912 ~ 3444191 (+)
G1583830 NA non-coding upstream 64822 3391352 ~ 3392600 (+)
G1583841 NA non-coding upstream 78822 3378372 ~ 3378600 (+)
G1583840 NA non-coding upstream 79095 3378076 ~ 3378327 (+)
G1583817 NA non-coding upstream 94418 3362651 ~ 3363004 (+)
G1583862 NA non-coding downstream 8230 3470797 ~ 3471025 (+)
G1583873 NA non-coding downstream 20481 3483048 ~ 3483258 (+)
G1583891 NA non-coding downstream 56346 3518913 ~ 3520091 (+)
LOC110517772 LOC106610548 other upstream 385779 3032473 ~ 3091701 (+)
LOC118941397 LOC106601386 other upstream 566616 2888963 ~ 3003056 (+)
G1583215 NA other upstream 642128 2765199 ~ 2815294 (+)
LOC110518136 LOC106592283 other upstream 653991 2770293 ~ 2811692 (+)
LOC110497294 LOC106602191 other downstream 155271 3609578 ~ 3622792 (+)
G1583951 NA other downstream 178082 3640649 ~ 3642876 (+)
LOC118941415 LOC106602193 other downstream 225601 3687991 ~ 3692012 (+)
G1584344 NA other downstream 600101 4062668 ~ 4063226 (+)

Expression


Co-expression Network