LOC110497290 (LOC106610393)


Basic Information

Item Value
gene id LOC110497290
gene name LOC106610393
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3492742 ~ 3498731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573326.2
AAACTCCGAAGGTGGCAGTAATGTGCTAATCCAGTCAAACGAGAAGAGCGGTACGTCATCAACAGGCGACACGATAGCATCCTTCTAGACCCGAAGCAGTATCGTTATTCAACAATAACAAGCTAGggctttacataagtattcaaactaGTATAATCATCCAACATTTTTAAGCAACGATAGGCAATTTGGCTTAAGTATTTCGGTTGTAGATTAAACGGTGCATGAAGAGCAGAAATGGCAACAATGGCGGACTGTGTTGGTTATCAATTGCAAATAGCTTCGATAATGGAGGTGCTAGCCAATTCGGCGGTGGTCGAGATCTGCAAAATTGTTGATGATGGTTATTCCTCTCTGCGTTCCCAAATGGAGCAGGAAAGAGTGcaaattgagagggagagagagcaaaccGAGAAAGAGAAATATGTGCTCCGACGAAAATTACGCGAAATGGACGTGAAGATGCGGAGCTATGAGCGAAGACTCAGAAGACGCGATCTACGGAATGAAATGCATGCAGTTAATTTGAGACCACATGAAGTTTCAGTGTCTTCAATTGCCATGCCAGTGAGTAATGACCAGGCCCGAGGCCCCCTGGCTACAATCGAGGACCATTCACAATACCACCACATGCCTCAGGAAGACAGAACTGCATTGTCCCTAATCAAGCAGGAAAGAGTGGACAGCTGTGGCGTGGACCTGAAGGTAGAACAGAACATCAGCTCAGAGAGTAGACCCACTGTTCCAGAACCCAACGACGATGACAGCGAGAGACATAACATGGCTGACACTCACAGCTCACCCACTGCAGCCACAGAGGACCCCACTGAGCCCACTAGGACCAGTGGATCCGAAGGTAACCTCAAGTcagagatggggacagagggTGTGAACCAGAGACCCCAGCAGCCAACAGGACCAGATCTCAGCACAGAGATACTGAATAGCCCCGGTTTGGATCTGGCTCTGATGCAGGAGAGGGTTCTGGGGCATCTAGGGCTTTCCTTGGCCCAGGCAGCAGCCGCAAACGCAGAGGCTGCCGGGCATCCATCTTGCTCCTACCAAACCCAGGCTGACGTAGAGAGCCAGTCCAGACAATTCCCCGGCAGCGATATGGGCGTCTTCGCCCCCTTTGACATgacagctcctcctcctcccgcaCCGCCAGCGAATCAGAGGCAGCCGCATGGAGCCACGACGACGAACGAGCCAATGGGCTGTAACTTCTGCGGCCGCATCTTCCACAGCCAGGCGTCCCTGGAGgtgcaccagagggtccacacgggACAGCGGCCGTTCAGCTGCCCACACTGCGGCAAGTCATTCGCGCAGCCCAACAACCTCCGGGTGCACCTGCTAATCCACAGTGGCGAGAGGCGGTACCGTTGCTCGatctgtgggaagagtttcattTCGTCAAGTCACCTTAAGAGACACAGGACCGTTCACACCCAGGAGAAACCCTACATCTGCTCTCGGTGCGGCCAGTCCTTCACTCAACTCTGCAGCGTTCGGAGACACAGACAGCAGTCTCGGTGCGGAGAGCCGCCTCACGCTCAAAACGAACTTTCTGCTTGACTGTAGAAAAGGTGTTgtacagtacgtgtgtgtgttagctgtatCTGAAGTGATTTACACTAGCTATAGGTTTCCTGATCAAAACGTTTCGCCTTTTAGTCACTTGGATGATAGGTCCACAGATAGAAGTTGAGAAATGTATGTTGTTAACTATAAATTAATATTTACCTAAAGATGACACTGTCATTAGCTTTATGTGACTGTTTAGTACAATACATCCCGTCTTACCTTGGTCATAAGGTAAGATGGGGTTGTCCCTGGGAAAGGCTTGTTTTTAGAGTAGTACTTTATTGATCCCAACATGGGACATGGTTTTATTTTACCACTAGAAGAAGTCCAGGAGGATGAAGCAGGACATTACGGAGACCAGTGGATTGGACTGAGCCCTCGTCTGGCATGGCTGACTTCACTGTGCGACTGAATCACAGGGATGAACGAAGCAAATAATAAAACGTTTTCCTGCATGTTTTGAAGGAGTTTGCTGACAGGGTCATTTGAGACCAATGCACGTtcacgtgctagtcggaactaggaaacgcTGAAATTAATGACTTGCTAATTGGCTCTAGTTATCATAGGTGTTTATACACTTGCTGCGCtgaaccagttagcaagtcggaaATATTTAAGTTCCGACTAGCACATGAACGCGGCAATACTGAGGTGTAACAGGTGAGAAgcagtttacacaggcagcccaattcaatTTTTCTCCAaaatggtcttttgaccaatcacatgaGATCTTTTCACATCCAATCTTTTTCAGAGCCAATCtgatttgttaaaagaccaaTTAGTTGGGGGAAAAAGATCTgaattaggctgcctgtgtaaaccgTTGAAATGCACAGTGCGTGGACAGTTTACACAATCAGGTATTGCAAGAGAAGGGTTAATACATGACAGAGGAAGTGCAGGTTTATgctgtcaaatcaaataaatgtcaACTAAATTCATGGGAAATGGCCCACTG

Function

NR:

description
zinc finger protein 792-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573326.2 True 2554 mRNA 0.48 4 3492742 3498731

Neighbor

gene id symbol gene type direction distance location
LOC110497289 LOC106610394 coding upstream 265 3483359 ~ 3492477 (+)
LOC110497287 LOC106610389 coding upstream 11199 3471763 ~ 3481543 (+)
LOC110497285 LOC106602172 coding upstream 22184 3462658 ~ 3470625 (+)
LOC110497286 LOC106610388 coding upstream 30175 3457422 ~ 3462567 (+)
LOC110497278 LOC106602183 coding upstream 35406 3406473 ~ 3457336 (+)
LOC110497299 fgl1 coding downstream 8573 3507304 ~ 3516455 (+)
LOC110497294 LOC106602191 coding downstream 110847 3609578 ~ 3622792 (+)
LOC118941415 LOC106602193 coding downstream 189260 3687991 ~ 3692012 (+)
LOC110534570 sgcz coding downstream 413756 3912487 ~ 4229364 (+)
LOC118941416 LOC106595337 coding downstream 881391 4380122 ~ 4385135 (+)
G1583873 NA non-coding upstream 9484 3483048 ~ 3483258 (+)
G1583862 NA non-coding upstream 21717 3470797 ~ 3471025 (+)
G1583825 NA non-coding upstream 48551 3438912 ~ 3444191 (+)
G1583891 NA non-coding downstream 20182 3518913 ~ 3520091 (+)
G1583893 NA non-coding downstream 25304 3524035 ~ 3524339 (+)
G1583898 LOC106602190 non-coding downstream 38636 3537367 ~ 3537790 (+)
G1583899 NA non-coding downstream 39533 3538264 ~ 3539765 (+)
G1583901 NA non-coding downstream 48361 3547092 ~ 3547490 (+)
LOC110534752 LOC106602173 other upstream 57130 3416203 ~ 3445744 (+)
LOC110517772 LOC106610548 other upstream 421099 3032473 ~ 3091701 (+)
LOC118941397 LOC106601386 other upstream 601936 2888963 ~ 3003056 (+)
G1583215 NA other upstream 677448 2765199 ~ 2815294 (+)
G1583951 NA other downstream 141918 3640649 ~ 3642876 (+)
G1584344 NA other downstream 563937 4062668 ~ 4063226 (+)
LOC110514758 LOC106595337 other downstream 1049824 4545961 ~ 4551255 (+)

Expression


Co-expression Network