LOC118941415 (LOC106602193)


Basic Information

Item Value
gene id LOC118941415
gene name LOC106602193
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3687991 ~ 3692012 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953986.1
TGTACATAGGCTACTGCGCATTCCCCTGCGACACCATAGAGAAAACCTAATTGATTCACACGGCGTTTTATTAAAGGACCAACTCTCATTGACTTCTCTCTCACTTGTTATCCTTTCAAATCGCTTACAGTACTTTTCATAATCCATCTACGGGATGATGATAATCGGCGATGCAGATGAAACTGAACATCAAAGGTGTGAGGACGGTCAAGGATCAAGGAGTTATGTTTCAAAAAGAAATCTATAAAGCGTCTCATTAGCATACGGCAAGAGGGAATTTACATACGGAATATATTTAAAGTGGCGCTCGCACTCTCACGCTCGCACTCTTCATTTGCAGAACGCAGTGAGCACGAGCTGAGCACTCTCCCGGCAACCGCATCAACGACTGCGAGGGGAGGAAAACCCGGACGAACAAACAGAGCAAAGGGGAGTAGCCCGAGGTCGAGAGAGGAGAGCATGTGCTGAACTGAGGATAAACGGATAATATGCGGATGTAAATAAAACGCGCACTtgcaagagagagaaaaaacgcATTTGGTGACTGCGCAAAAACACACATTCACTCAGGAGGATCCCTCTTTCAGGAGCACAGTACGTTAACTTTTCTACCCGGTTCAAGGCGGCTGGTTGTGAAGCGTGCGGGGCGGTGGTTTTTGTGATGGGGGCAGTGGGCGAGGTGGGTACATTTTCCTTGCACGGCCTGGATAGCTTCGGACACGGATCGCATTTTGTCCTGACGCCCGCTGGGGACACCCCCGGACTGATGAGCGAGCACCTGGTGTCGGCCGAGAGGTTGTCGCGGAGCACGCCGTCGGATCTGACGCATCTGAAGGGGATTCTACGGAGGAGGCAGCTGTACTGCAGGACCGGGTTCCACCTCGAGATACTGCCCGATGGCACAGTGCAAGGCACCAGGAAAGACCATAGCAGATTTGGTATTTTGGAGTTCATCAGCTTGGCTGTGGGGATGGTGAGCATCCGTGGGGTGGACAGTGGATTATACCTGGGCATGAACAGCAAGGGAGACCTCTACGGCTCTgagAAGCTGACAGCCGAGTGCGTGTTCCGGGAGCAGTTTGAGGAGAACTGGTACAACACGTACTCATCCAACCTCTACAGACACGGTGACCGGGGAGCGCACTACTTCGTGGCGCTCAACAAGGACGGCACGTCCAGGGACGGTGCCCGCTCCCGGCGACACCAGCGCTTCACCCACTTCCTTCCTAGGCCCGTAGATCCCGACCGTGTACCCGAACTCTACAGAGAGGTCCTGGGCCACAGCTGAGACCCGGTGGGAGTGTGTTGGTCCCTGCGGCGCTACACACCCAGCACACTGCACCGTGACTCTCAGTACTCTCCTATGAAGGGTCTGCATATCGTCAGTCTCCCTATGGCTTCCTATGGAAACAAAATGGAGGAAAGGTCGCttgggggctgtggggtggatagCAAATATGTGTGAAGTCTGGCCTTGCGGTCCCCAAAAATGGGTCAAGGCCGGTGCAGCCCCAGGAGAAAGGAGTACAGGTGTTTAATAGGGGCTTTTTGGCCAAAAGAGAGGCTGGCCTGGTGGCCATCTTTGTTTTGAGCATCGTGTTGGAAGGTGAATGGATCACCTCCAGAGCTGCTGATGTCATCTTTCCGGATGGTTCTTCTTCACCACCCCCTGAGTGGCTTCTGACATTCTGATTGGTCAATCTATCTGTAGTGAAATGGGAGTAGGAGAAGAAGAGTGGATGGTCCTCCAGCGGAGTGTAGACTTTGTGTTCTTCTGTGGTACCCCAAGGTGGACTGTTTTGACGAAACACTCTAGAAGATTTGTGAAGGAATTCTGTTCTGAACCTTCCGTAACTGCATTCTATTCCCTGACACGAGCATGGACGAGAAAAAAAGACTTACAAAATAACCTTAGCCTGTTTCAGTTTTTTTAATTTATGCATTTTTCTGGgacatatatttattttatatatttatttattttgagaatatattttttacagGTATATAAGATATTAAAAATAAGCCATCAGAGATGTATTTTGTGCCACTGTGTAAAGTACTGCATTTGACATGTCCTTTCAAACTGACTGAAGAAATATTTTCCTAGGAGTTTTTATTTAGACAATGGTTTGTGTAAGGCCGCGTTGTCACTATTCCCGAGCTTGTCATCATCGGGGGCGTCCATGTTTCTCTTATGTCATCAGAAAGAGCCAGAGTTCCACTGGGTTCCAGTGAGGAATAAACCTGTTAACACTTCA
>TU1813473
TGAAACTGAACATCAAAGGTGTGAGGACGGTCAAGGATCAAGGAGTTATGTTTCAAAAAGAAATCTATAAAGCGTCTCATTAGCATACGGCAAGAGGGAATTTACATACGGAATATATTTAAAGTGGCGCTCGCACTCTCACGCTCGCACTCTTCATTTGCAGAACGCAGTGAGCACGAGCTGAGCACTCTCCCGGCAACCGCATCAACGACTGCGAGGGGAGGAAAACCCGGACGAACAAACAGAGCAAAGGGGAGTAGCCCGAGGTCGAGAGAGGAGAGCATGTGCTGAACTGAGGATAAACGGATAATATGCGGATGTAAATAAAACGCGCACTtgcaagagagagaaaaaacgcATTTGGTGACTGCGCAAAAACACACATTCACTCAGGAGGATCCCTCTTTCAGGAGCACAGTACGTTAACTTTTCTACCCGGTTCAAGGCGGCTGGTTGTGAAGCGTGCGGGGCGGTGGTTTTTGTGATGGGGGCAGTGGGCGAGGTGGGTACATTTTCCTTGCACGGCCTGGATAGCTTCGGACACGGATCGCATTTTGTCCTGACGCCCGCTGGGGACACCCCCGGACTGATGAGCGAGCACCTGGTGTCGGCCGAGAGGTTGTCGCGGAGCACGCCGTCGGATCTGACGCATCTGAAGGGGATTCTACGGAGGAGGCAGCTGTACTGCAGGACCGGGTTCCACCTCGAGATACTGCCCGATGGCACAGTGCAAGGCACCAGGAAAGACCATAGCAGATTTGGTATTTTGGAGTTCATCAGCTTGGCTGTGGGGATGGTGAGCATCCGTGGGGTGGACAGTGGATTATACCTGGGCATGAACAGCAAGGGAGACCTCTACGGCTCTgagAAGCTGACAGCCGAGTGCGTGTTCCGGGAGCAGTTTGAGGAGAACTGGTACAACACGTACTCATCCAACCTCTACAGACACGGTGACCGGGGAGCGCACTACTTCGTGGCGCTCAACAAGGACGGCACGTCCAGGGACGGTGCCCGCTCCCGGCGACACCAGCGCTTCACCCACTTCCTTCCTAGGCC

Function

NR:

description
fibroblast growth factor 20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953986.1 False 2261 mRNA 0.49 3 3687991 3692012
TU1813473 True 1056 TUCP 0.55 3 3688168 3690984

Neighbor

gene id symbol gene type direction distance location
LOC110497294 LOC106602191 coding upstream 65199 3609578 ~ 3622792 (+)
LOC110497299 fgl1 coding upstream 171536 3507304 ~ 3516455 (+)
LOC110497290 LOC106610393 coding upstream 189260 3492742 ~ 3498731 (+)
LOC110497289 LOC106610394 coding upstream 195514 3483359 ~ 3492477 (+)
LOC110497287 LOC106610389 coding upstream 206448 3471763 ~ 3481543 (+)
LOC110534570 sgcz coding downstream 220475 3912487 ~ 4229364 (+)
LOC118941416 LOC106595337 coding downstream 688110 4380122 ~ 4385135 (+)
LOC118941417 LOC106595337 coding downstream 708648 4400660 ~ 4404928 (+)
LOC118941418 LOC106602209 coding downstream 726689 4418701 ~ 4423685 (+)
LOC118941534 LOC106595337 coding downstream 743795 4435807 ~ 4442006 (+)
G1583958 NA non-coding upstream 28491 3658724 ~ 3659500 (+)
G1583956 NA non-coding upstream 32046 3654932 ~ 3655945 (+)
G1583953 NA non-coding upstream 40807 3644036 ~ 3647184 (+)
G1583950 NA non-coding upstream 48369 3638496 ~ 3639622 (+)
G1583947 NA non-coding upstream 49017 3636100 ~ 3638974 (+)
G1583979 NA non-coding downstream 24022 3716034 ~ 3716290 (+)
G1583985 NA non-coding downstream 32185 3724197 ~ 3724427 (+)
G1583990 NA non-coding downstream 34142 3726154 ~ 3726383 (+)
G1583991 NA non-coding downstream 37321 3729333 ~ 3729551 (+)
G1583994 NA non-coding downstream 42839 3734851 ~ 3735103 (+)
G1583951 NA other upstream 45115 3640649 ~ 3642876 (+)
LOC110534752 LOC106602173 other upstream 252379 3416203 ~ 3445744 (+)
LOC110517772 LOC106610548 other upstream 616348 3032473 ~ 3091701 (+)
G1584344 NA other downstream 370656 4062668 ~ 4063226 (+)
LOC110514758 LOC106595337 other downstream 856543 4545961 ~ 4551255 (+)
G1584899 NA other downstream 1429979 5121991 ~ 5128284 (+)
LOC110497310 gstcd other downstream 1738285 5428914 ~ 5491185 (+)
G1585375 NA other downstream 1756464 5448476 ~ 5448938 (+)

Expression


Co-expression Network