LOC118941417 (LOC106595337)


Basic Information

Item Value
gene id LOC118941417
gene name LOC106595337
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4400660 ~ 4404928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953990.1
TCTGCAGGAACACTCTAGTCCAATGCCCCAGAGACCAGTCTCAGCCACCAGAAACATGACTCTTCCCAGGACCAGCTCAGCCACCAGAAGTATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAGGGTCAGAAGAGACCCAGGGGGCCAGAGGAGAACGGGGGGAACTGGTCAACATGGAACTTCTTGGGTTGCCTAACATTGGCAACACTTGCTTCCTTAACGCCACCCTGCAGTGCCTCCTGGTCCTGCCTTCCTTCTCAAAGGAAATCCTGCACCAGGAACAACTCTGgagctcctcccccttctccaacCTGCTCAGGTGTCTGTCTGATGTGCACCGTTCAGGTCTACCTGACAGTGTGGCAAACCAGGCCTCAAAAGCAGACCTCATGTGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTATCTGGGGGACACGCAACAGGACGCACACGAGTTACTTGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCACATGTACCAGCTGTGGGCGCGAGTCGTCTACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAAGTGAACAGGTTGAATTCACATGTGAGGGCTGTAAAGGCCTCCACGCCTCAAAGGTGGAGCAGTTCCACACACTGCCTCTTGTGCTGGTTCTGCATCTGAAGAGGTTTGGAGGACCTGGGGGGTTGGAGAAGCTGGAGGCTCCTCTTTTGTTTCCTTCGGAGCTGAGGCTCTCCACCCTCTGTGGGGACATGGTGCCACACCTGCACAGTGCCAGCCCACAGGCCCTCACCAACCAGGCCCCCAGCATCCAGGGGTCCATCCCCCAGACCCTCGCCAGCCAAGTCTCCAGCCCACCTGGAGCGGCAAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCACTACATTAGTGACATATTGCATGCCAGTGGAAACTGGTTCTGCTGTAACGACAGCCAGGTGTCAATGTCCAATGTAGCCACTGTGCTGAGGACCAGAGCCCGGAGTGCCTACATGCTCTTCTATATGTTCAGGTACTGTTTACTCTCGCCATCTATATTATTGTGTTGCTATTTATGTGTACGGTTCCTTTCACCCTACAGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAATAGGGCCACCAGCATCAGCCCCAGCCTAAACAGGGGCAGCACCTGGACCAACCTCCAAACACTCTCACCTGCCTCGAAAGGGGTAGCACTTGGCCCAGTCTCAaaacccccagcccagcctcaacAGGGATAGTACCAGGCCCTGTCTCA
>TU1814330
CAGGTGTCTGTCTGATGTGCACCGTTCAGGTCTACCTGACAGTGTGGCAAACCAGGCCTCAAAAGCAGACCTCATGTGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTATCTGGGGGACACGCAACAGGACGCACACGAGTTACTTGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCAC

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 37-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953990.1 False 1496 mRNA 0.55 9 4400660 4404928
TU1814330 True 264 lncRNA 0.53 2 4401860 4402232

Neighbor

gene id symbol gene type direction distance location
LOC118941416 LOC106595337 coding upstream 15525 4380122 ~ 4385135 (+)
LOC110534570 sgcz coding upstream 171296 3912487 ~ 4229364 (+)
LOC118941415 LOC106602193 coding upstream 708648 3687991 ~ 3692012 (+)
LOC110497294 LOC106602191 coding upstream 777868 3609578 ~ 3622792 (+)
LOC110497299 fgl1 coding upstream 884205 3507304 ~ 3516455 (+)
LOC118941418 LOC106602209 coding downstream 13773 4418701 ~ 4423685 (+)
LOC118941534 LOC106595337 coding downstream 30879 4435807 ~ 4442006 (+)
LOC110515142 LOC106602209 coding downstream 43574 4448502 ~ 4451077 (+)
LOC110514540 LOC106610365 coding downstream 46202 4451130 ~ 4453904 (+)
LOC110512119 LOC106595337 coding downstream 104247 4509175 ~ 4512950 (+)
G1584673 NA non-coding upstream 69279 4331083 ~ 4331381 (+)
G1584668 NA non-coding upstream 71248 4329195 ~ 4329412 (+)
G1584661 NA non-coding upstream 76603 4323611 ~ 4324057 (+)
G1584450 NA non-coding upstream 98857 4301589 ~ 4301803 (+)
G1584419 NA non-coding upstream 147523 4252784 ~ 4253137 (+)
G1584722 NA non-coding downstream 49070 4453998 ~ 4552127 (+)
G1584731 NA non-coding downstream 81972 4486900 ~ 4487735 (+)
G1584698 LOC108260735 non-coding downstream 115989 4520917 ~ 4800849 (+)
LOC118941536 LOC106610423 non-coding downstream 171439 4571744 ~ 4599810 (+)
G1584344 NA other upstream 337434 4062668 ~ 4063226 (+)
G1583951 NA other upstream 757784 3640649 ~ 3642876 (+)
LOC110497289 LOC106610394 other upstream 915240 3483359 ~ 3492477 (+)
LOC110514758 LOC106595337 other downstream 143627 4545961 ~ 4551255 (+)
G1584899 NA other downstream 717063 5121991 ~ 5128284 (+)
LOC110497310 gstcd other downstream 1025369 5428914 ~ 5491185 (+)
G1585375 NA other downstream 1043548 5448476 ~ 5448938 (+)
G1585483 NA other downstream 1238828 5643756 ~ 5715375 (+)

Expression


Co-expression Network