LOC118941536 (LOC106610423)


Basic Information

Item Value
gene id LOC118941536
gene name LOC106610423
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4571744 ~ 4599810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955465.1
CACTAAGGCTGGGTCACATGGTGGCCAGTGTTTCTAATCCATTGTGGTTGACTTATAGAGTTTCACTACCTAAAGTCACACAGACGTAGGACAGTGCAGTGAGAAGACACAGGTACATTAGAGTTGAGGTTAGAAGTAGAAGTTACTGTATCTGACCACAAGTGTTTAAAGATGTCAGAGGGAGTCAATGAAATCTCAGATAGATTTGAAGACGATGAGCCTGATGCAGTGAAGAACACAGACATTGATGACCAAAATTATTCCAACGTAAGAGCCTTCAAGTCCAGTCCAAGAGATGGAGTTGTTGTTTCAGTACATGTTCAGTGGTGGAAGAGACCCTCTGGAGttgctgcagtgtgtctggggctgctgtgtgttctcctactggctgggaccataggcctgtctgtctactATGGAGACATTGGTCACCAGCTACAGTCCAGTTACAACATCCTGACTAAAGAgatagaccagctacagacctgttacaacaacctgactaaggagagagaccagctacagaccagttacaacaacctgactaaagagagagaccagctacagaccagttacaacaacctgactaaagagagagaccagctacagtccagttacaacaacctgactaaagagagagaccagctacagtccagttacaacaacctgactaaagatagagaccagctacagactgagagagatttTCTTAGTGGGAGGTCTACCAATCTCAAACAAACCTGTCCTGAAGGCTGGCAGAAGTTTGAATCCAGTTGGTACTTCCTGTCTACTGAGACTAAAACCtggaaggagagcagagaggactgtctggagagaggagcagacctggtgatcATAAACAGCGATAAGGAacagGAGTTTCTCTTCAAACTCAAGAAGAGAGTatggattggtctgactgactctgtcactgAGGCGACCTGGAGATGGGTGGACGGCAccccactgaccaccccaaggtactggtctcCAAATCAGCCTGATAATGGTGATGGCAATCCAGAATATGAGCCTAATAGATCAGGGAAGAGACCCTTCCTAGTTGCTGCAGTGTttctggggctgctgtgtgttcaactggctgggatcataggcctgtctgtctactgtgagTTTGTGTCCAAGTTCATTGATTATCACCTAGTTGTAAGACGTGCTGGTTATTAG
>TU1814381
GTTTGTTTCCACAGAGCCTAATAGATCAGGGAAGAGACCCTTCCTAGTTGCTGCAGTGTttctggggctgctgtgtgttcaactggctgggatcataggcctgtctgtctactagCAAACAACCATGCCGACAACCATCCATGGAGATCGGTGGACAAAGGGCTGGACAACGGGCCACACCGATAAAACACATGGTTCCCATGAAAGCGGACACCACAATCAATGGGGGCGCAGAGCAGTACCATTctgctcatctgatgaaggtgcacGTGAATCAGTATCACTCATTATTTGCAGAAACAGAtacttgtatattttatttaactaggcaagtcatttaagaacaaattcttatttgcaatgatgtcctaggaacagtgggttaactgccttgttcagggacagaacaacagatttttactatgtactgtgggccatgtttactatgtactgtgggctatgtttactatgtactgtgggctatgtttactatgtactgtgggctatgtttactatgtactgtgggctatgtttactatgtactgtgggctatgtttactatgtactgtgggctatgtttactatgtactgtgggctatgtttactatgtactgtgggc

Function

NR:

description
guanine nucleotide-binding protein G(o) subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955465.1 False 1188 mRNA 0.46 7 4571744 4576538
TU1814381 True 619 lncRNA 0.44 3 4576367 4599810

Neighbor

gene id symbol gene type direction distance location
LOC110514758 LOC106595337 coding upstream 20489 4545961 ~ 4551255 (+)
LOC110512119 LOC106595337 coding upstream 58794 4509175 ~ 4512950 (+)
LOC110514540 LOC106610365 coding upstream 117840 4451130 ~ 4453904 (+)
LOC110515142 LOC106602209 coding upstream 120667 4448502 ~ 4451077 (+)
LOC118941534 LOC106595337 coding upstream 129738 4435807 ~ 4442006 (+)
LOC110534951 LOC106602209 coding downstream 29159 4605697 ~ 4610263 (+)
LOC110533205 LOC106595337 coding downstream 44603 4621141 ~ 4626449 (+)
LOC118941419 LOC106597769 coding downstream 50033 4626571 ~ 4628355 (+)
LOC118941538 NA coding downstream 64097 4640635 ~ 4643443 (+)
LOC118941420 LOC106597769 coding downstream 67506 4644044 ~ 4645765 (+)
G1584722 NA non-coding upstream 19617 4453998 ~ 4552127 (+)
G1584731 NA non-coding upstream 84009 4486900 ~ 4487735 (+)
LOC118941418 LOC106602209 non-coding upstream 152478 4418701 ~ 4423685 (+)
LOC118941417 LOC106595337 non-coding upstream 169512 4400660 ~ 4404928 (+)
G1584673 NA non-coding upstream 240363 4331083 ~ 4331381 (+)
G1584760 NA non-coding downstream 15283 4591821 ~ 4592094 (+)
G1584797 NA non-coding downstream 128219 4704757 ~ 4796239 (+)
G1584826 NA non-coding downstream 217852 4794390 ~ 4794793 (+)
G1584869 NA non-coding downstream 344255 4920793 ~ 4921499 (+)
LOC110498597 LOC106592710 non-coding downstream 505481 5069016 ~ 5084826 (+)
G1584344 NA other upstream 508518 4062668 ~ 4063226 (+)
LOC118941415 LOC106602193 other upstream 880760 3687991 ~ 3692012 (+)
G1583951 NA other upstream 928868 3640649 ~ 3642876 (+)
LOC110497294 LOC106602191 other upstream 948956 3609578 ~ 3622792 (+)
G1584899 NA other downstream 545453 5121991 ~ 5128284 (+)
LOC110497310 gstcd other downstream 853759 5428914 ~ 5491185 (+)
G1585375 NA other downstream 871938 5448476 ~ 5448938 (+)
G1585483 NA other downstream 1067218 5643756 ~ 5715375 (+)
G1585804 NA other downstream 1232440 5808978 ~ 5812853 (+)
G1584906 LOC106610368 non-coding downstream 488999 5088809 ~ 5090649 (+)

Expression


Co-expression Network