LOC118941420 (LOC106597769)


Basic Information

Item Value
gene id LOC118941420
gene name LOC106597769
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4644044 ~ 4645765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037634.1
GCCCACCTGGAGCGGCCAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGCCTAAACAGGGGCAGCACCTGGACCAGCC
>XR_005037633.1
CCCACCTGGAGCGGCCAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCACTACATTAGTGACATATTGCATGCCAGTGGAAACTGGTTCTGCTGTAACGACAGCCAGGTGTCAGTGTCCAATGAAGCCACTGTGCTGAGAACCAGAGCCCGGAGTGCCTACATGCTCTTCTATATGTTCAGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGCCTAAACAGGGGCAGCACCTGGACCAGCCTCAaaacccccagcccagcctcaacA
>XM_036953996.1
tggtgagaagagagagagagatagagagagagtgaaaccaGTGAAAAATAAGTTATGACAGAACACTGAAATAGTTATGAGGAGTACACGATGTAGTAGACCTGTAGTAGACTagtactgtagtagactgtagacaGTGTGGTGGACTGTAGAGGAAATGAGAATCCTATGATCACATGTGTTTTCTTACAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCACTACATTAGTGACATATTGCATGCCAGTGGAAACTGGTTCTGCTGTAACGACAGCCAGGTGTCAGTGTCCAATGAAGCCACTGTGCTGAGAACCAGAGCCCGGAGTGCCTACATGCTCTTCTATATGTTCAGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGCCTAAACAGGGGCAGCACCTGGACCAGCCTCAaaacccccagcccagcctcaacA

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 37-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037634.1 False 214 mRNA 0.61 3 4644044 4645739
XR_005037633.1 False 375 mRNA 0.57 4 4644045 4645765
XM_036953996.1 True 526 mRNA 0.50 3 4644341 4645765

Neighbor

gene id symbol gene type direction distance location
LOC118941538 NA coding upstream 601 4640635 ~ 4643443 (+)
LOC118941419 LOC106597769 coding upstream 15689 4626571 ~ 4628355 (+)
LOC110533205 LOC106595337 coding upstream 17595 4621141 ~ 4626449 (+)
LOC110534951 LOC106602209 coding upstream 33781 4605697 ~ 4610263 (+)
LOC118941536 LOC106610423 coding upstream 67506 4571744 ~ 4599810 (+)
LOC118941421 LOC106595337 coding downstream 18231 4663996 ~ 4668447 (+)
LOC118941539 LOC106595337 coding downstream 52017 4697782 ~ 4700374 (+)
LOC118941423 LOC106595337 coding downstream 117846 4763611 ~ 4771296 (+)
LOC118941424 LOC106595337 coding downstream 136720 4782485 ~ 4794237 (+)
LOC118941353 LOC106602209 coding downstream 164616 4810381 ~ 4813313 (+)
G1584760 NA non-coding upstream 51950 4591821 ~ 4592094 (+)
G1584722 NA non-coding upstream 91917 4453998 ~ 4552127 (+)
G1584731 NA non-coding upstream 156309 4486900 ~ 4487735 (+)
LOC118941418 LOC106602209 non-coding upstream 224778 4418701 ~ 4423685 (+)
G1584797 NA non-coding downstream 58992 4704757 ~ 4796239 (+)
G1584826 NA non-coding downstream 148625 4794390 ~ 4794793 (+)
G1584869 NA non-coding downstream 275028 4920793 ~ 4921499 (+)
LOC110498597 LOC106592710 non-coding downstream 436254 5069016 ~ 5084826 (+)
G1584906 LOC106610368 non-coding downstream 443044 5088809 ~ 5090649 (+)
LOC110514758 LOC106595337 other upstream 94855 4545961 ~ 4551255 (+)
G1584344 NA other upstream 580818 4062668 ~ 4063226 (+)
LOC118941415 LOC106602193 other upstream 953060 3687991 ~ 3692012 (+)
G1583951 NA other upstream 1001168 3640649 ~ 3642876 (+)
LOC110497294 LOC106602191 other upstream 1021256 3609578 ~ 3622792 (+)
G1584899 NA other downstream 476226 5121991 ~ 5128284 (+)
LOC110497310 gstcd other downstream 784532 5428914 ~ 5491185 (+)
G1585375 NA other downstream 802711 5448476 ~ 5448938 (+)
G1585483 NA other downstream 997991 5643756 ~ 5715375 (+)
G1585804 NA other downstream 1163213 5808978 ~ 5812853 (+)

Expression


Co-expression Network