LOC110497170 (LOC106610324)


Basic Information

Item Value
gene id LOC110497170
gene name LOC106610324
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5028709 ~ 5032688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573144.2
CATCCTttgcgtttaaaaaaaaaaatgtagcatTACATCACGGTATGAAACAGGAGGCCAACTCCAAAGAGTGTGGTAAACAACTAAATTAATTTACTTCTCTTTAGTACATATGGAAATAGTGAAATATGAAAAGATAATGAGAGGTCTTGAGTGTTGTCGCCGACAGGATTCCTAGACATTTGCCTCGGATCCCCGGCTTTTTTTTTGACTATCACCATGGCAGCAGCAAAGATGACCTTACGGCTACGCAAGAAGAGTGCCCTGGACAAGTCCTCTGAGGTTTTGTCTGCCGAGGCGTCTCCAGACTCTAAGTGCCCCATCTGTCTGGACCGATTCAACAACATGGCCTACCTCGATCTCTGCTTGCACAAGTTCTGCTTCCGCTGCATCCACGAGTGGTCCAAGAACAAAGCTGAGTGCCCGCTATGCAAGCAGCCATTCAACTCTATCTATCACAGTATACAATCAGAGAAGGACTTCAAGAAGTATGACCTGCGGCCCACGGAGAACGGTTCCTTTGGGAGTTTCGCAGGGGAACGGTTCCGCTACCGCACCACGCTGACGGGGGCGCGTCGGCAGGACCAGAGAAGAACATCCCCTCCCCCCGACAACGGGGTCATGTTCGAGGCCCTAACGGGGGCTTCCCCCCCTCCTCGACAGGACCGAGGCCTCCGCCGCATGATGGCGCGCCTGGCGGCCAGGAGGCGGGCAGAAAGCGAGGGCCGGACCGTGCGCAGCCTCCGTGAGCAGGAGATGATCAAGTTCAGACGGGCGCTCTACCGGCGAGGGGTGCGAGTGCGGAGCGTGCGAGACGGTGGCCGTTCCCGGGACATCTCGGCGGAGTTCTTTCAGAAGAACCCGGCCTGCCTGCACCGCCTGTTGCCCTGGCTGAAGAGAGAGCTGGTGGTGCTGTACGGCGCTCACGGCTCCCTGGTCAACATCGTGCAGCACATTATCATGTCCCGCATCACCCGCTATGACATGGAGGACCGGGCCATCCACGAGGAGCTGCAGCCTTTCCTCCAGGCCCGCACCGATCACTTCCTGCATGAGTTTGTCAACTTCGCCCGAGCACCCTTCAACATGGAGGCCTACGACCAGCATGCCGTCTACGACTGCCCTGCGCCGTCCTCGGACGAGGGCAGCAGCTCCAACTCCTCGGTGATTGCCATCTccgaggatgaggaggagggcgaTTCTGTGGAGCTGGACCCCATGTCCGGGGGCGCCCTGAGCCAGTCAACATGGGACGACGAGACACCCGGACCTTCGTACTCCACAACAGAACCCACCAGGGCCCTGCTGCTATCCATCAGAGACTCTGACTCAGAGAGCAGTGTGGGGGAGGAGTGCGGAGCAGTGTTACAGCCAAAGACCCCTCGCCTGACTGCGGACTCTGCTTGGGTGAAAACCGACAAGGACGGACAGGCGTGTACCTCCTCTGGCGATGAGGATTGCATCATCGTGGGCTTTGTAAAACCCCTTGCTGAAAGGACCCCGGAGCTGGTCAAGCTGTCCTCTGACTCAGAGGAGTCTGTTCTGGAGGAGATCAAAGATGAAGTGCCCAGGCTGCTTCAACACATCCGCTTCACCAGCCTTAGCCCCGCCTCCTCTCAAGGCCAATGTCCTGGGAAGGCAGAGGGGGTGGAAAGGAAGCAAGATGTATCGTGCTCCAAGGAGAGACGTAACACCTCACCCTCAATTAGATGTGAGTCATCATCTAGTAAGTCAGCAAGCAAAAACAGAGGACAAACTGAGAAAGACGGCAGGAGATGTCACAGTCGAGATAGCTCTAGAGAGAGGCCACGGTCGAGAAGCAGAGACCGGGGGAGGAGGTCCAGGAGCGCCGACCGCAGCCGCTCGACCAAGAGCCCGGCTATCTCCATCAACAGCGACAGCACTCTGTCCAGAGGCAGGAGGCAGTCACGCTCCCAAAGCCGCGACCGCTCCCACACTAAATGGGAGAAGACGAGGGACAATAAAGATAGCAGCCGATCAGGCCGCAGCCACGACTCATCGTCACACTCCTATCACTGGCACTACTACAGccgggagagtgagagggacagcAGTGCCATGCTCTACACAGAGAGGAGGTCCTACTACTCCAGCTCACACAGGAACATCGATTGCAGGTCCCCGAGCCAGAGTCCTGATTCCCACCGGCGGGATAAGAGGCGCTCCAGAAGTCGTTCCAGCACCTGTTCGCCGTCCGGCGCTCACAGGAAGTCTCGTCACGAGAAGCCCAGCGGGAAGAGAAAGTACAAATCGAGACACCTGGAGGAACCTTCCCCCAAAGACCAGTCCTCCATAGCCCTCGACGagcctccctcctccaccacctcgtCCTATGTGAAAGACAAGAAGAAGAGCAAAGAGAAGCGTCACAGGAAGTCCAAGGAGAAGTCTGGGGGGAAGAGGAGCAGGAGCCTCAGCGTGGAGATCATCTTTGAGGGCAGCTCCTCAGAGCAAACCAGGAAGcaccagaagaagaagaagaagcacaaGAAGAAGGGCAAGAGGCACAGGAGCAAAGAGCGCACAGGGTCCAGGAAACACTCGCCCACTGTCATTACCATAGACAGCGACAGTGACCAACATACTGCCGAAGGCGCTAACGATGCTAACCACACCTGCCCGGTAAGCAGCAGCACAAGCAACAGCGTGCTAGCGCCTagcacaaccaccaccacagGCAACCCTGCAGACTCTGGCCTGCTGGAGTCCATGTTACAAGACTGGGAACAGCAGATTCCACCTGTGGGTCTGGACAGTGGAGTGCTGGAGGCCAAGCCTCCTATAAATGTTGCTGCTGCTTctgacacacccacacagagtgaGGGGGTTCTGTCCCAATCTGCCTCTGCGGATGAGGCAAACTCTCATAGCCCTTCAAATGacaacacaagtcattttttggaAGAATCATAATGCTGGCCTCGGTGGGTAGGAAGACATTTAATTTACCTTTAAAAGTTAGTTTTACACCTCACTATGTAGGATGTTATATGTACTGTTCTGCCAAAAGGTGCTCTTTCATTTGGGATGTGCCACTTTGCTGTATGAGGTTAAAAAAAAGGGGGGTCAAAGATTGGGTTTTATttgtcttatttacagtgactgtCTGTAAGGCCTACATTTAAAAAGTATTTGTATAAAATACTTCAACTAATTTCTTATCAGTCATTCATTTCTATGCATCATTCTCAGGGATAACATGGGCAATAAAGCTGATGTAGCTTGTACCGTTGTGTTGAAACCAAA

Function

NR:

description
E3 ubiquitin-protein ligase Topors-like

GO: NA

KEGG:

id description
K10631 TOPORS; E3 ubiquitin-protein ligase Topors

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573144.2 True 3267 mRNA 0.54 2 5028709 5032688

Neighbor

gene id symbol gene type direction distance location
LOC110497180 LOC106610322 coding upstream 859 5024940 ~ 5027850 (+)
LOC110533207 mxd4 coding upstream 23842 4962696 ~ 5004867 (+)
LOC118941353 LOC106602209 coding upstream 215396 4810381 ~ 4813313 (+)
LOC118941424 LOC106595337 coding upstream 234472 4782485 ~ 4794237 (+)
LOC118941423 LOC106595337 coding upstream 257413 4763611 ~ 4771296 (+)
LOC118936569 LOC106610310 coding downstream 2437 5035125 ~ 5036894 (+)
LOC110498596 LOC106610325 coding downstream 7730 5040418 ~ 5066495 (+)
LOC118941425 NA coding downstream 24079 5056767 ~ 5058016 (+)
LOC110498597 LOC106592710 coding downstream 36328 5069016 ~ 5084826 (+)
LOC110497175 LOC106610327 coding downstream 60900 5093588 ~ 5095659 (+)
G1584869 NA non-coding upstream 107210 4920793 ~ 4921499 (+)
G1584797 NA non-coding upstream 232470 4704757 ~ 4796239 (+)
G1584826 NA non-coding upstream 233916 4794390 ~ 4794793 (+)
LOC118941536 LOC106610423 non-coding upstream 428899 4571744 ~ 4599810 (+)
G1584906 LOC106610368 non-coding downstream 56121 5088809 ~ 5090649 (+)
G1584907 NA non-coding downstream 66428 5099116 ~ 5102383 (+)
G1584900 cdn2b non-coding downstream 97342 5130030 ~ 5132249 (+)
G1584932 NA non-coding downstream 118833 5151521 ~ 5151833 (+)
LOC110514758 LOC106595337 other upstream 479520 4545961 ~ 4551255 (+)
G1584344 NA other upstream 965483 4062668 ~ 4063226 (+)
LOC118941415 LOC106602193 other upstream 1337725 3687991 ~ 3692012 (+)
G1583951 NA other upstream 1385833 3640649 ~ 3642876 (+)
LOC110497294 LOC106602191 other upstream 1405921 3609578 ~ 3622792 (+)
G1584899 NA other downstream 89303 5121991 ~ 5128284 (+)
LOC110497310 gstcd other downstream 397609 5428914 ~ 5491185 (+)
G1585375 NA other downstream 415788 5448476 ~ 5448938 (+)
G1585483 NA other downstream 611068 5643756 ~ 5715375 (+)
G1585804 NA other downstream 776290 5808978 ~ 5812853 (+)

Expression


Co-expression Network