LOC118941425


Basic Information

Item Value
gene id LOC118941425
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5056767 ~ 5058016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037640.1
GCATTTGTCTGGCAGCAGCAGCTCATttcagcagaggtgtatttaacaACGGTTTGGTTACTATGGATGTTAACCCTGATTCCCCATACTACATCAACTTGCTTGACAGCAAGTCTCATCCTGAAGATCACAGAGAATATGTGATGTTTCATGGCTGCTCAAAAGAGGGCGCAGAGTTGATTAAAAGGGAACCCCAGAGACTGGGCTTGGGTGGGCTGGAGCACCACAAAGGACACATTTGTGTGGGTAGAACCATCATTGGATCTGATAGGACAGGATCTAGTTAGAAAACAAGTGGTTTTTCGTGGTAAGACCATGTGTGCATTTTATCCTCAGACTTTTCAACTAACATGGACTTTGATATTAATCAGTGTGCTCAGTTTAGGTTACACTTTCTTGATGgtaccagtaggcctatgttaacttcttgattttatacacaaaaaaatgtaaatgtacttttcCTTTGATATTTAAGTGATCAATATTATGCCGGGGATTACACTGACAATGATATTCTATTCCTGATAACATACAGAGGATTCTACAGAGTTCTATCAGCTCTGGTATGCTGATAGTAATGACCAAGTGAGAGGAGCCAGCACCCCCCTCTGCTTTAAAACCCCAAAACACAGACTACTGCCTGGAAAACAACCAGTTGGTCATCACAACACAGGAACAATACAATCCACAATATCTCAAATCCAAAGATTGTGTTTTGAAGACCATGCGTGAACTACTTGTCTTTAAAAGGCAGCACTCTCTGTTGGGATTGATGATGTTCCTCACAAGAACATATTAGCTAAAATGATCCATAGGAGAGGATATGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037640.1 True 830 mRNA 0.41 3 5056767 5058016

Neighbor

gene id symbol gene type direction distance location
LOC118936569 LOC106610310 coding upstream 19873 5035125 ~ 5036894 (+)
LOC110497170 LOC106610324 coding upstream 24079 5028709 ~ 5032688 (+)
LOC110497180 LOC106610322 coding upstream 28917 5024940 ~ 5027850 (+)
LOC110533207 mxd4 coding upstream 51900 4962696 ~ 5004867 (+)
LOC118941353 LOC106602209 coding upstream 243454 4810381 ~ 4813313 (+)
LOC110498597 LOC106592710 coding downstream 11000 5069016 ~ 5084826 (+)
LOC110497175 LOC106610327 coding downstream 35572 5093588 ~ 5095659 (+)
LOC100301741 mtap coding downstream 51525 5109541 ~ 5115195 (+)
tet2 LOC106602283 coding downstream 275364 5333380 ~ 5390400 (+)
trnaa-ugc-141 NA coding downstream 336608 5394624 ~ 5394699 (+)
G1584869 NA non-coding upstream 135268 4920793 ~ 4921499 (+)
G1584797 NA non-coding upstream 260528 4704757 ~ 4796239 (+)
G1584826 NA non-coding upstream 261974 4794390 ~ 4794793 (+)
LOC118941536 LOC106610423 non-coding upstream 456957 4571744 ~ 4599810 (+)
G1584906 LOC106610368 non-coding downstream 30793 5088809 ~ 5090649 (+)
G1584907 NA non-coding downstream 41100 5099116 ~ 5102383 (+)
G1584900 cdn2b non-coding downstream 72014 5130030 ~ 5132249 (+)
G1584932 NA non-coding downstream 93505 5151521 ~ 5151833 (+)
LOC110514758 LOC106595337 other upstream 507578 4545961 ~ 4551255 (+)
G1584344 NA other upstream 993541 4062668 ~ 4063226 (+)
LOC118941415 LOC106602193 other upstream 1365783 3687991 ~ 3692012 (+)
G1583951 NA other upstream 1413891 3640649 ~ 3642876 (+)
LOC110497294 LOC106602191 other upstream 1433979 3609578 ~ 3622792 (+)
G1584899 NA other downstream 63975 5121991 ~ 5128284 (+)
LOC110497310 gstcd other downstream 372281 5428914 ~ 5491185 (+)
G1585375 NA other downstream 390460 5448476 ~ 5448938 (+)
G1585483 NA other downstream 585740 5643756 ~ 5715375 (+)
G1585804 NA other downstream 750962 5808978 ~ 5812853 (+)

Expression


Co-expression Network