trnaa-ugc-141


Basic Information

Item Value
gene id trnaa-ugc-141
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5394624 ~ 5394699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-ugc-141
ggtcctgtgtggctcagtcggtagagcatggtgcttgcaacgccaggattgtgggttcgattcccacgggggacca

Function

NR:

description
Deoxyribonuclease gamma precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc-141 True 76 mRNA 0.61 1 5394624 5394699

Neighbor

gene id symbol gene type direction distance location
tet2 LOC106602283 coding upstream 4224 5333380 ~ 5390400 (+)
LOC100301741 mtap coding upstream 279429 5109541 ~ 5115195 (+)
LOC110497175 LOC106610327 coding upstream 298965 5093588 ~ 5095659 (+)
LOC110498597 LOC106592710 coding upstream 309798 5069016 ~ 5084826 (+)
LOC110498596 LOC106610325 coding upstream 328129 5040418 ~ 5066495 (+)
LOC118941427 arhgef38 coding downstream 10767 5405466 ~ 5424393 (+)
LOC110497310 gstcd coding downstream 34215 5428914 ~ 5491185 (+)
npnta npnt coding downstream 104458 5499157 ~ 5560224 (+)
aimp1a aimp1 coding downstream 389271 5783970 ~ 5807227 (+)
LOC118941430 LOC106602292 coding downstream 548926 5943625 ~ 5966079 (+)
G1585337 NA non-coding upstream 1617 5391634 ~ 5393007 (+)
G1585336 NA non-coding upstream 61542 5332779 ~ 5333082 (+)
G1585271 NA non-coding upstream 166088 5228209 ~ 5228536 (+)
G1584957 NA non-coding upstream 182306 5212088 ~ 5212318 (+)
G1584940 NA non-coding upstream 219210 5175180 ~ 5175414 (+)
G1585417 NA non-coding downstream 123818 5518517 ~ 5519050 (+)
G1585421 NA non-coding downstream 131657 5526356 ~ 5548399 (+)
G1585423 NA non-coding downstream 139641 5534340 ~ 5535128 (+)
G1585436 NA non-coding downstream 168240 5562939 ~ 5563252 (+)
G1584899 NA other upstream 266340 5121991 ~ 5128284 (+)
LOC110514758 LOC106595337 other upstream 845435 4545961 ~ 4551255 (+)
G1584344 NA other upstream 1331398 4062668 ~ 4063226 (+)
LOC118941415 LOC106602193 other upstream 1703640 3687991 ~ 3692012 (+)
G1583951 NA other upstream 1751748 3640649 ~ 3642876 (+)
G1585375 NA other downstream 53777 5448476 ~ 5448938 (+)
G1585483 NA other downstream 249057 5643756 ~ 5715375 (+)
G1585804 NA other downstream 414279 5808978 ~ 5812853 (+)
G1585983 NA other downstream 775385 6169580 ~ 6170827 (+)

Expression


Co-expression Network