LOC110497317 (LOC106593018)


Basic Information

Item Value
gene id LOC110497317
gene name LOC106593018
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5635283 ~ 5667507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954049.1
TACATTTGGTTCTACACACACCTCCAGCCAGGTATAAAACAAGCAGTATGGAAGGTGATCATTACATGCATGTTAAGGCACAGTTAACAGGGTACTACAAACTATCAACCAATCAGtgtttttcagagtcaaaaTGCCAAAATACAAGGTGACTGTGTACACACACAACATCGCAACTGGCACCACGATGAACAACATCTTCATCAAGCTGGTTGGCGAAAAAGGAGAGAGTAAGCGCACGTGGCTCACTAGCTTGAAGGGACTCTTCTATCAAGACACAGGGTCTCGTGAATTCGACGTGGTGTGCCCCTTTTCACTCGGCAAGCTGGTGCTGATAGAGCTGGACAAACAGCCCCTCCCACTCTTCCCCCTGGATGCCTGGTTCCCATCCAAGGTTGTCGTGACGACGCCAGAGAGAGGCACATGCCAGTTCCCTATCTACTGTTGGATTCTGGACAAGGAGGTGCACCTGTTCAGAGAGGGCACAGctAAAAGGCTCTGTGATGAAACTAATCATCTTGCCAGGTACAGCAGGGAACTGGAGATGAAGACGAGAACTGAGCTGTACTGCTGGGATACCTACAAGGAGGGTTTCCCCGGCAGCATGAAGGCAGACAACCCTCTGGATCTTCCCAGCGAGATCCAATTCTCGTTCACCAAGGCCACCCAGTTCCTCTTCACCGCCGCCACCGGGATCACTGAGCTGAAACTAATGGGGTATTCTGACAGCAAGAAGAGCTGGAAAAACATTGATGAAATCAGCAATGTCTGCCTCAATAGAACTGTCATCTCAGACTACGCACAGGAGCACTGGAAGGAAGACGAGTTTTTCGGGTACCAGTATCTGAACGGCTGCAACCCCATGTTGATCCGTCGCTGCTCGGAGTTGCCGGCAAATTTCCCCGTCACAGGAGACATGGTCAAGCCCTCTCTTCGTGGATCGTCCAGCCTCCTAAAGGAATTGcagAGCGGCAACATATTCCTGCTTGACTACAAGAACCTGGATGGATTAAAGGCAAATGTGATCAATACGAAAAAACAGTACATGGTGGCTCCTCTGGTTCTGCTCTACAGAACCCCTGATGACAAGCTGGTTCCCATCGCCATCCAGctgaaGCAGAAGCCTGCTAAAGACAACCCCATCTTCCTTCCTACTGACTCTGAGTATGACTGGCTCCTGGCCAAGATCTTTGTGAGGAGCGCTGACTTTCAAGAGCACCAGCTCAACGTCCACCTGCTGCGCACTCACCTCCTGGCTGAGGTGTTCGCTGTAGCACTGCTGCGCAACATGCCCATGGTGCACCCCCTCTACAAGCTTCTGATTCCACACACCCGCTACTCCCTCCAGATCAACCTCTTGGCCCGGGCATTTCTAATAGCTGATGAAGGAGTTTTCACTCAGTTTGCTGCTTCGGGCGGAGAGGCGATGAATGAGATCCTGAGGAGATCTGTGGCCTCATTGACCTACAGCTCCCTCTGTATGCCGGAAGACATCACTGCACGAGGTCTGGAGTCAGTCCCCAACAACTACTACAGGGATGATGGACTCAAGCTGTGGGACATCATCCACAGGTTTGTAGAGGGAGTGATTGGTTTCTATTACAAGAGTGACTCAGAGGTCCGGGAAGACCAGGAACTACAGAACTGGATCAAGGATATCTTTGACCATGGCTTCCTGGCCCAAGAATGCACAGGAATCCCTCAGTCTTTCTCCACTGTGCCAGAGGTCGTCAAGTTTGTCACCGTGGTGATCTTCACCTGCTCAGGCCAGCATTCTGCTGTCAACTCTGGACAGTATGACTATGGTGGCTGGATGCCCAACACCCCCATCTCCCTGCAACAGCCACCTCCCACCACTAAGGGGCAGTCTACTGAGAGCACCATGCTGAAGACCTTCCCCGATGTCGGCACAACAGCACAGGGCATGTCCACTATGTGGCTCCTTAGCAAGCAATCCACTGACTTTGTGACCCTTGGCCAGTACCCAGAGGAGCACTTCAACGAGATTCCACCCTGCAGGATGATTCAGAAATTCCAGACGGATCTGAAGGTCTTCAGCGAGACCGTCAAGGCCAGGAACTCTGGACTACCAGTGCCATACACCTACATGGACCCTGCTTTGGTGGAGAACAGCGTGGCGATTTAGATAAGCCAAGGGCCTAGACCAGGGTCCAGTTCATTAGGCACTAATTGGAAGAAAACTGAGGACCTACCTGGACTTTTCCAGTTAGGTTTATTTTTGTTGTACTTTGTGCagccttttaaaatgttttccaTTGAGTGCCCTGATGAACATGACCCAATGATTCTGGAGGCATGCGCTAGTAAACATGCTTCAAtctattaaatgttttattgagCATGATCATTTTTGGGGCTTCAATAAACAAATATCTTAATTCAATCAGATAAAGGGAAATCACACTGTGGGTTCAGTCAGAATGTTATCGCTGTATCAGAAGTGTTAACTGTGTTAAACCAACACACACCGCCACATGGTGTCCCTCACACAGACTAAGAACACTTGTTGATGTTATTATTACCTTTGTACGTGTTAATGGATGTTAAGAAATACAGGGTCTTTCTGACAATTCATTTCTGGTGCCATATAACTACGGACTACAGGGACTCCTGGTGAAAATGAGTTCTCCTGCTAAATGATGTGACACTGAAATGTTGATGAACAGTAAACAAGTGTCAGAATAATATGAGAGAACAATAGGTGTGACTCATTTACAATTAAAAGCTAATAATTTGTATCTCTAGTCTTCTTGTGATATTTGCCACATCTCATTTTGGTTGATGCCCTGTCTACCTCATgtattaattaaaaaataaatgtataaaatgAA
>XM_036954046.1
ATGTACATTTGGTTCTACACACACCTCCAGCCAGGTATAAAACAAGCAGTATGGAAGGTGATCATTACATGCATGTTAAGGCACAGTTAACAGGGTACTACAAACTATCAACCAATCAGagtcaaaaTGCCAAAATACAAGGTGACTGTGTACACACACAACATCGCAACTGGCACCACGATGAACAACATCTTCATCAAGCTGGTTGGCGAAAAAGGAGAGAGTAAGCGCACGTGGCTCACTAGCTTGAAGGGACTCTTCTATCAAGACACAGGGTCTCGTGAATTCGACGTGGTGTGCCCCTTTTCACTCGGCAAGCTGGTGCTGATAGAGCTGGACAAACAGCCCCTCCCACTCTTCCCCCTGGATGCCTGGTTCCCATCCAAGGTTGTCGTGACGACGCCAGAGAGAGGCACATGCCAGTTCCCTATCTACTGTTGGATTCTGGACAAGGAGGTGCACCTGTTCAGAGAGGGCACAGctAAAAGGCTCTGTGATGAAACTAATCATCTTGCCAGGTACAGCAGGGAACTGGAGATGAAGACGAGAACTGAGCTGTACTGCTGGGATACCTACAAGGAGGGTTTCCCCGGCAGCATGAAGGCAGACAACCCTCTGGATCTTCCCAGCGAGATCCAATTCTCGTTCACCAAGGCCACCCAGTTCCTCTTCACCGCCGCCACCGGGATCACTGAGCTGAAACTAATGGGGTATTCTGACAGCAAGAAGAGCTGGAAAAACATTGATGAAATCAGCAATGTCTGCCTCAATAGAACTGTCATCTCAGACTACGCACAGGAGCACTGGAAGGAAGACGAGTTTTTCGGGTACCAGTATCTGAACGGCTGCAACCCCATGTTGATCCGTCGCTGCTCGGAGTTGCCGGCAAATTTCCCCGTCACAGGAGACATGGTCAAGCCCTCTCTTCGTGGATCGTCCAGCCTCCTAAAGGAATTGcagAGCGGCAACATATTCCTGCTTGACTACAAGAACCTGGATGGATTAAAGGCAAATGTGATCAATACGAAAAAACAGTACATGGTGGCTCCTCTGGTTCTGCTCTACAGAACCCCTGATGACAAGCTGGTTCCCATCGCCATCCAGctgaaGCAGAAGCCTGCTAAAGACAACCCCATCTTCCTTCCTACTGACTCTGAGTATGACTGGCTCCTGGCCAAGATCTTTGTGAGGAGCGCTGACTTTCAAGAGCACCAGCTCAACGTCCACCTGCTGCGCACTCACCTCCTGGCTGAGGTGTTCGCTGTAGCACTGCTGCGCAACATGCCCATGGTGCACCCCCTCTACAAGCTTCTGATTCCACACACCCGCTACTCCCTCCAGATCAACCTCTTGGCCCGGGCATTTCTAATAGCTGATGAAGGAGTTTTCACTCAGTTTGCTGCTTCGGGCGGAGAGGCGATGAATGAGATCCTGAGGAGATCTGTGGCCTCATTGACCTACAGCTCCCTCTGTATGCCGGAAGACATCACTGCACGAGGTCTGGAGTCAGTCCCCAACAACTACTACAGGGATGATGGACTCAAGCTGTGGGACATCATCCACAGGTTTGTAGAGGGAGTGATTGGTTTCTATTACAAGAGTGACTCAGAGGTCCGGGAAGACCAGGAACTACAGAACTGGATCAAGGATATCTTTGACCATGGCTTCCTGGCCCAAGAATGCACAGGAATCCCTCAGTCTTTCTCCACTGTGCCAGAGGTCGTCAAGTTTGTCACCGTGGTGATCTTCACCTGCTCAGGCCAGCATTCTGCTGTCAACTCTGGACAGTATGACTATGGTGGCTGGATGCCCAACACCCCCATCTCCCTGCAACAGCCACCTCCCACCACTAAGGGGCAGTCTACTGAGAGCACCATGCTGAAGACCTTCCCCGATGTCGGCACAACAGCACAGGGCATGTCCACTATGTGGCTCCTTAGCAAGCAATCCACTGACTTTGTGACCCTTGGCCAGTACCCAGAGGAGCACTTCAACGAGATTCCACCCTGCAGGATGATTCAGAAATTCCAGACGGATCTGAAGGTCTTCAGCGAGACCGTCAAGGCCAGGAACTCTGGACTACCAGTGCCATACACCTACATGGACCCTGCTTTGGTGGAGAACAGCGTGGCGATTTAGATAAGCCAAGGGCCTAGACCAGGGTCCAGTTCATTAGGCACTAATTGGAAGAAAACTGAGGACCTACCTGGACTTTTCCAGTTAGGTTTATTTTTGTTGTACTTTGTGCagccttttaaaatgttttccaTTGAGTGCCCTGATGAACATGACCCAATGATTCTGGAGGCATGCGCTAGTAAACATGCTTCAAtctattaaatgttttattgagCATGATCATTTTTGGGGCTTCAATAAACAAATATCTTAATTCAATCAGATAAAGGGAAATCACACTGTGGGTTCAGTCAGAATGTTATCGCTGTATCAGAAGTGTTAACTGTGTTAAACCAACACACACCGCCACATGGTGTCCCTCACACAGACTAAGAACACTTGTTGATGTTATTATTACCTTTGTACGTGTTAATGGATGTTAAGAAATACAGGGTCTTTCTGACAATTCATTTCTGGTGCCATATAACTACGGACTACAGGGACTCCTGGTGAAAATGAGTTCTCCTGCTAAATGATGTGACACTGAAATGTTGATGAACAGTAAACAAGTGTCAGAATAATATGAGAGAACAATAGGTGTGACTCATTTACAATTAAAAGCTAATAATTTGTATCTCTAGTCTTCTTGTGATATTTGCCACATCTCATTTTGGTTGATGCCCTGTCTACCTCATgtattaattaaaaaataaatgtataaaatgAA
>XM_036954050.1
TGGGATTTAACCATGCATGGATGTTGTGTGTGTCTTAGTCACAGACTTACCGTTGGCTTTGAGCAGAGTGATTACGGCACGGTTACTGGTTTCTCGGGCATCACGACAGGATGAAAGAGAGGGAGCTTTGGACTGTCCTTCTGTTTGGATCCTCGCTTAAACGCTTCCTTAGAATGTGTGTGCTGCTGCAGTCTCGTTGTTagtcaaaaTGCCAAAATACAAGGTGACTGTGTACACACACAACATCGCAACTGGCACCACGATGAACAACATCTTCATCAAGCTGGTTGGCGAAAAAGGAGAGAGTAAGCGCACGTGGCTCACTAGCTTGAAGGGACTCTTCTATCAAGACACAGGGTCTCGTGAATTCGACGTGGTGTGCCCCTTTTCACTCGGCAAGCTGGTGCTGATAGAGCTGGACAAACAGCCCCTCCCACTCTTCCCCCTGGATGCCTGGTTCCCATCCAAGGTTGTCGTGACGACGCCAGAGAGAGGCACATGCCAGTTCCCTATCTACTGTTGGATTCTGGACAAGGAGGTGCACCTGTTCAGAGAGGGCACAGctAAAAGGCTCTGTGATGAAACTAATCATCTTGCCAGGTACAGCAGGGAACTGGAGATGAAGACGAGAACTGAGCTGTACTGCTGGGATACCTACAAGGAGGGTTTCCCCGGCAGCATGAAGGCAGACAACCCTCTGGATCTTCCCAGCGAGATCCAATTCTCGTTCACCAAGGCCACCCAGTTCCTCTTCACCGCCGCCACCGGGATCACTGAGCTGAAACTAATGGGGTATTCTGACAGCAAGAAGAGCTGGAAAAACATTGATGAAATCAGCAATGTCTGCCTCAATAGAACTGTCATCTCAGACTACGCACAGGAGCACTGGAAGGAAGACGAGTTTTTCGGGTACCAGTATCTGAACGGCTGCAACCCCATGTTGATCCGTCGCTGCTCGGAGTTGCCGGCAAATTTCCCCGTCACAGGAGACATGGTCAAGCCCTCTCTTCGTGGATCGTCCAGCCTCCTAAAGGAATTGcagAGCGGCAACATATTCCTGCTTGACTACAAGAACCTGGATGGATTAAAGGCAAATGTGATCAATACGAAAAAACAGTACATGGTGGCTCCTCTGGTTCTGCTCTACAGAACCCCTGATGACAAGCTGGTTCCCATCGCCATCCAGctgaaGCAGAAGCCTGCTAAAGACAACCCCATCTTCCTTCCTACTGACTCTGAGTATGACTGGCTCCTGGCCAAGATCTTTGTGAGGAGCGCTGACTTTCAAGAGCACCAGCTCAACGTCCACCTGCTGCGCACTCACCTCCTGGCTGAGGTGTTCGCTGTAGCACTGCTGCGCAACATGCCCATGGTGCACCCCCTCTACAAGCTTCTGATTCCACACACCCGCTACTCCCTCCAGATCAACCTCTTGGCCCGGGCATTTCTAATAGCTGATGAAGGAGTTTTCACTCAGTTTGCTGCTTCGGGCGGAGAGGCGATGAATGAGATCCTGAGGAGATCTGTGGCCTCATTGACCTACAGCTCCCTCTGTATGCCGGAAGACATCACTGCACGAGGTCTGGAGTCAGTCCCCAACAACTACTACAGGGATGATGGACTCAAGCTGTGGGACATCATCCACAGGTTTGTAGAGGGAGTGATTGGTTTCTATTACAAGAGTGACTCAGAGGTCCGGGAAGACCAGGAACTACAGAACTGGATCAAGGATATCTTTGACCATGGCTTCCTGGCCCAAGAATGCACAGGAATCCCTCAGTCTTTCTCCACTGTGCCAGAGGTCGTCAAGTTTGTCACCGTGGTGATCTTCACCTGCTCAGGCCAGCATTCTGCTGTCAACTCTGGACAGTATGACTATGGTGGCTGGATGCCCAACACCCCCATCTCCCTGCAACAGCCACCTCCCACCACTAAGGGGCAGTCTACTGAGAGCACCATGCTGAAGACCTTCCCCGATGTCGGCACAACAGCACAGGGCATGTCCACTATGTGGCTCCTTAGCAAGCAATCCACTGACTTTGTGACCCTTGGCCAGTACCCAGAGGAGCACTTCAACGAGATTCCACCCTGCAGGATGATTCAGAAATTCCAGACGGATCTGAAGGTCTTCAGCGAGACCGTCAAGGCCAGGAACTCTGGACTACCAGTGCCATACACCTACATGGACCCTGCTTTGGTGGAGAACAGCGTGGCGATTTAGATAAGCCAAGGGCCTAGACCAGGGTCCAGTTCATTAGGCACTAATTGGAAGAAAACTGAGGACCTACCTGGACTTTTCCAGTTAGGTTTATTTTTGTTGTACTTTGTGCagccttttaaaatgttttccaTTGAGTGCCCTGATGAACATGACCCAATGATTCTGGAGGCATGCGCTAGTAAACATGCTTCAAtctattaaatgttttattgagCATGATCATTTTTGGGGCTTCAATAAACAAATATCTTAATTCAATCAGATAAAGGGAAATCACACTGTGGGTTCAGTCAGAATGTTATCGCTGTATCAGAAGTGTTAACTGTGTTAAACCAACACACACCGCCACATGGTGTCCCTCACACAGACTAAGAACACTTGTTGATGTTATTATTACCTTTGTACGTGTTAATGGATGTTAAGAAATACAGGGTCTTTCTGACAATTCATTTCTGGTGCCATATAACTACGGACTACAGGGACTCCTGGTGAAAATGAGTTCTCCTGCTAAATGATGTGACACTGAAATGTTGATGAACAGTAAACAAGTGTCAGAATAATATGAGAGAACAATAGGTGTGACTCATTTACAATTAAAAGCTAATAATTTGTATCTCTAGTCTTCTTGTGATATTTGCCACATCTCATTTTGGTTGATGCCCTGTCTACCTCATgtattaattaaaaaataaatgtataaaatgAA
>TU1815503
CAGCTTAGTTAAAGTACATTATAATGTTACAGAATTATGTAATCAAATAACTTTAAGTGACGTTGTAGTTTGCTGCTTCGGGCGGAGAGGCGATGAATGAGATCCTGAGGAGATCTGTGGCCTCATTGACCTACAGCTCCCTCTGTATGCCGGAAGACATCACTGCACGAGGTCTGGAGTCAGTCCCCAACAACTACTACAGGGATGATGGACTCAAGCTGTGGGACATCATCCACAGGTTTGTAGAGGGAGTGATTGGTTTCTATTACAAGAGTGACTCAGAGGTCCGGGAAGACCAGGAACTACAGAACTGGATCAAGGATATCTTTGACCATGGCTTCCTGGCCCAAGAATGCACAGGAATCCCTCAGTCTTTCTCCACTGTGCCAGAGGTCGTCAAGTTTGTCACCGTGGTGATCTTCACCTGCTCAGGCCAGCATTCTGCTGTCAACTCTGGACAGTATGACTATGGTGGCTGGATGCCCAACACCCCCATCTCCCTGCAACAGCCACCTCCCACCACTAAGGGGCAGTCTACTGAGAGCACCATGCTGAAGACCTTCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954049.1 False 2852 mRNA 0.48 15 5635283 5657262
XM_036954046.1 False 2845 mRNA 0.48 15 5635283 5657265
XM_036954050.1 False 2927 mRNA 0.48 15 5635283 5667507
TU1815503 True 565 TUCP 0.50 4 5642856 5643992

Neighbor

gene id symbol gene type direction distance location
LOC118941429 LOC106602268 coding downstream 5058 5602786 ~ 5630225 (-)
LOC118941428 LOC106602285 coding downstream 43315 5563952 ~ 5591968 (-)
LOC110497312 LOC106602288 coding downstream 206443 5424493 ~ 5428840 (-)
LOC110498628 LOC106602282 coding downstream 233968 5393120 ~ 5401315 (-)
LOC110498626 LOC106610359 coding downstream 353620 5249185 ~ 5281663 (-)
LOC110517354 loxe3 coding upstream 41773 5709280 ~ 5721001 (-)
LOC110514596 LOC106610360 coding upstream 55290 5722797 ~ 5783955 (-)
LOC110497321 dkk2 coding upstream 179276 5846783 ~ 5864839 (-)
LOC110497325 papss1 coding upstream 240821 5908328 ~ 5942688 (-)
LOC110534562 lef1 coding upstream 310351 5977858 ~ 6035375 (-)
G1585694 NA non-coding downstream 57950 5576933 ~ 5577333 (-)
G1585692 NA non-coding downstream 58809 5576221 ~ 5576474 (-)
G1585690 NA non-coding downstream 67250 5567577 ~ 5568033 (-)
G1585681 NA non-coding downstream 74454 5560615 ~ 5560829 (-)
G1585654 NA non-coding downstream 75075 5559261 ~ 5560208 (-)
G1585738 NA non-coding upstream 91 5667598 ~ 5668085 (-)
G1585741 NA non-coding upstream 10085 5677592 ~ 5682455 (-)
G1585761 NA non-coding upstream 69177 5736684 ~ 5773408 (-)
G1585765 NA non-coding upstream 75717 5743224 ~ 5743529 (-)
G1585803 NA non-coding upstream 140270 5807777 ~ 5808002 (-)
G1585234 NA other downstream 486606 5148376 ~ 5148677 (-)
G1585201 LOC106610364 other downstream 559677 5073480 ~ 5075606 (-)
LOC110498624 LOC106610319 other downstream 719193 4895349 ~ 4916135 (-)
LOC118941535 LOC106610349 other downstream 1069222 4557837 ~ 4566205 (-)
G1585020 NA other downstream 1108096 4521269 ~ 4527187 (-)
casp6 LOC100135902 other upstream 482335 6149828 ~ 6155350 (-)
LOC110497340 djb14 other upstream 503386 6170059 ~ 6181437 (-)
G1586357 NA other upstream 877716 6545223 ~ 6545867 (-)
G1586560 NA other upstream 1211819 6879326 ~ 6879757 (-)
G1587221 NA other upstream 2105536 7773043 ~ 7773434 (-)
G1585722 NA non-coding upstream 978 5644970 ~ 5712694 (-)

Expression


Co-expression Network