LOC118941430 (LOC106602292)


Basic Information

Item Value
gene id LOC118941430
gene name LOC106602292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5943625 ~ 5966079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954079.1
AGTTTCTGCAGCTGACTGTAGGCTAGGCTGTACAGTAATACAGAGAGGGGTTGGACCACTGTATGTTTGCATGTGGGAGGAGCGCACGCTCAAAGACAGAGTTCATTTCAGCCATGTAAACATTAGGAGTTTGATCGCTGAAAGAACAAGGCGCACAACTGGAGAGGATCCCAAGCAAGGCAGGGGGAAGACATCTTTGCCTCAGTCAATCCAAATACAGTAGGCCCAACAACAAGGACTAATTCCTATTTATCCAGGGCCCTCAGAGGCACTAGCTGACTTTGGGTGAACCAGAGAGCTCTTCATTGGTGTGTGGACAGTAGACAGTGTTGGACCATGGCGCTCGTGGACCCGACTGCATCCCATCTGGACCCGGGCATGGATGGTGAGAGCGGGGTCCTCGCCAGTGTCTTTGGGGTCCTCCCTAACGCCAACTGCCCCAAACACGGGCAAAACACTCCGGAGGATACGAAACGATGCCTACGCAAGGTCATCGGGCACCACAGGGACTACGTCAAGATCTCGCTGCCAGACGCCAAGGGCAACCGGCTGCCCACGGAGTGGTGGAAGACAGCCATCGCGTTCTTCTACGCCATCTTCAACCTGGTCCTGACCACCGTGGTCATCACGGTCGTCCACGAGAGGGTCCCGGAGAAGGAGAACAGCCCGCCACTGCCCGATAAGTTCTTTGACTACATCGACCGGGTGAAGTGGGCGTTCACGGTCACCGAGATCAACGGCATGCTCCTGGTGGGAATCTGGGTTATACAGTGGCTTTTCCTCAGATACAAGTCGATTGCAGGTCGGAGGTTCTTCTTCCTGATTGGCACCCTCTACCTGTACCGCTGCGTCACCATGTACATCACAACCCTTCCTGTACCCGGCAATCACTTCACCTGTGCCCCCaagctgtatgGGGACTCTCACGCTAAGATGCAGCGTGTGCTGACGTTGATCTCCGGCGGTGGTCTGTCCATCACCGGCTCCCACCTCATGTGTGGTGACTTCCTCTACAGCGGACACACCGTCATGCTTACCCTCACCTACCTGTTTATTAAAGAGTACTCCCCGCGGACGTTCTGGTGGTACCACCTGATGTGCTGGCTGCTGGCTGCTGTGGGAGTGGCCCTGCGGTGCTCGCCCAACAACTACCTCACCAACACCTGGTGGAACCCCGTGTTCAACTTCTTTGAGAGGAACGTGCAGACCCAGGTGCCCTGCTCCTTCTGCTGGCCAATCACCTGGCCCCCTGCCTGCCTTAAGAACTCCTGTAAGAAGTACAGTGCAGTGCAGAGCCTGCGGGAGGAGTAGGGAGAAGGGACTCCACCCCAGTTCAGGGTCCTTTGAACACCCCAACCTATTTTCTATTCATGCAGTATTTATACTCTATTATGTGATTTAAAGTATTATTGTGAAGGATAGTTGAAGTTTGTGAGGAAATGGTCATATAGGGAAAGTATGTGAGAAGAATAACATAGTCCACATTGGGTCCTTGTGTACTTCACCACTacaatgtatgttatttatgAGGTCAGTTTATTTGAAAATGTTCTTTATTCTTGTGAATGTTACTGTAACAAACTCAACTGAAGTCAACATGTTGCGATGTCATGCAGCGCTTTGCCACTGGCTTGCAGCTTTACTCAAAACTCCAACATAAAAATTGAATTTTATAGAGCTATACATTATTACGTTTACATCAATTAGATTGAATGAATATcaagtactttaaaaatatactTTCCAAAATGTGCCTTTTAAATACAAATGCATGCAATTTTAAATTGCAAACTTTAAGATGTTTGTTTTCAATGTTTAATATTGTGTATTAATTTAATTAGCATTTAGTCTTTAGTCTCATATGATTGTGTGTCCTAATGTACCATCATTTATACCTTCAGAATAAAAAAACAACACGTTGACTTCAGTT
>XM_036954078.1
CTGCAGCTGACTGTAGGCTAGGCTGTACAGTAATACAGAGAGGGGTTGGACCACTGTATGTTTGCATGTGGGAGGAGCGCACGCTCAAAGACAGAGTTCATTTCAGCCATGTAAACATTAGGAGTTTGATCGCTGAAAGAACAAGGCGCACAACTGGAGAGGATCCCAAGCAAGGCAGGGGGAAGACATCTTTGCCTCAGTCAATCCAAATACAGTAGGCCCAACAACAAGGACTAATTCCTATTTATCCAGGGCCCTCAGAGGCACTAGCTGACTTTGGGTGAACCAGAGAGCTCTTCATTGGTGTGTGGACAGTAGACAGTGTTGGACCATGGCGCTCGTGGACCCGACTGCATCCCATCTGGACCCGGGCATGGATGGTGAGAGCGGGGTCCTCGCCAGTGTCTTTGGGGTCCTCCCTAACGCCAACTGCCCCAAACACGGGCAAAACACTCCGGAGGATACGAAACGATGCCTACGCAAGGTCATCGGGCACCACAGGGACTACGTCAAGATCTCGCTGCCAGACGCCAAGGGCAACCGGCTGCCCACGGAGTGGTGGAAGACAGCCATCGCGTTCTTCTACGCCATCTTCAACCTGGTCCTGACCACCGTGGTCATCACGGTCGTCCACGAGAGGGTCCCGGAGAAGGAGAACAGCCCGCCACTGCCCGATAAGTTCTTTGACTACATCGACCGGGTGAAGTGGGCGTTCACGGTCACCGAGATCAACGGCATGCTCCTGGTGGGAATCTGGGTTATACAGTGGCTTTTCCTCAGATACAAGTCGATTGCAGGTCGGAGGTTCTTCTTCCTGATTGGCACCCTCTACCTGTACCGCTGCGTCACCATGTACATCACAACCCTTCCTGTACCCGGCAATCACTTCACCTGTGCCCCCaagctgtatgGGGACTCTCACGCTAAGATGCAGCGTGTGCTGACGTTGATCTCCGGCGGTGGTCTGTCCATCACCGGCTCCCACCTCATGTGTGGTGACTTCCTCTACAGCGGACACACCGTCATGCTTACCCTCACCTACCTGTTTATTAAAGAGTACTCCCCGCGGACGTTCTGGTGGTACCACCTGATGTGCTGGCTGCTGGCTGCTGTGGGAGTGGTGTGTATTCTGGTGGCCCACGAACACTACAGTGTGGATGTGGTGGTGGCCTACTTCATCACCTCACGCCTCTTCTGGTGGTACCACACCATGGCCAACGTCCAGGCCCTGCGGTGCTCGCCCAACAACTACCTCACCAACACCTGGTGGAACCCCGTGTTCAACTTCTTTGAGAGGAACGTGCAGACCCAGGTGCCCTGCTCCTTCTGCTGGCCAATCACCTGGCCCCCTGCCTGCCTTAAGAACTCCTGTAAGAAGTACAGTGCAGTGCAGAGCCTGCGGGAGGAGTAGGGAGAAGGGACTCCACCCCAGTTCAGGGTCCTTTGAACACCCCAACCTATTTTCTATTCATGCAGTATTTATACTCTATTATGTGATTTAAAGTATTATTGTGAAGGATAGTTGAAGTTTGTGAGGAAATGGTCATATAGGGAAAGTATGTGAGAAGAATAACATAGTCCACATTGGGTCCTTGTGTACTTCACCACTacaatgtatgttatttatgAGGTCAGTTTATTTGAAAATGTTCTTTATTCTTGTGAATGTTACTGTAACAAACTCAACTGAAGTCAACATGTTGCGATGTCATGCAGCGCTTTGCCACTGGCTTGCAGCTTTACTCAAAACTCCAACATAAAAATTGAATTTTATAGAGCTATACATTATTACGTTTACATCAATTAGATTGAATGAATATcaagtactttaaaaatatactTTCCAAAATGTGCCTTTTAAATACAAATGCATGCAATTTTAAATTGCAAACTTTAAGATGTTTGTTTTCAATGTTTAATATTGTGTATTAATTTAATTAGCATTTAGTCTTTAGTCTCATATGATTGTGTGTCCTAATGTACCATCATTTATACCTTCAGAATAAAAAAACAACACGTTGACTTC

Function

NR:

description
PREDICTED: phosphatidylcholine:ceramide cholinephosphotransferase 2-like

GO: NA

KEGG:

id description
K04714 SGMS; shingomyelin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954079.1 False 1930 mRNA 0.48 6 5943625 5966079
XM_036954078.1 True 2026 mRNA 0.49 6 5943630 5966075

Neighbor

gene id symbol gene type direction distance location
aimp1a aimp1 coding upstream 136398 5783970 ~ 5807227 (+)
npnta npnt coding upstream 383401 5499157 ~ 5560224 (+)
LOC110497310 gstcd coding upstream 452440 5428914 ~ 5491185 (+)
LOC118941427 arhgef38 coding upstream 519232 5405466 ~ 5424393 (+)
trnaa-ugc-141 NA coding upstream 548926 5394624 ~ 5394699 (+)
LOC110497324 LOC106602293 coding downstream 119 5966198 ~ 5973479 (+)
LOC110497328 hadh coding downstream 6267 5972346 ~ 5975764 (+)
LOC110497334 LOC106610305 coding downstream 156874 6122953 ~ 6151945 (+)
LOC110497332 LOC106610302 coding downstream 240214 6206293 ~ 6222302 (+)
LOC118941431 NA coding downstream 320102 6286181 ~ 6288416 (+)
G1585891 papss1 non-coding upstream 2554 5929874 ~ 5941071 (+)
G1585882 NA non-coding upstream 34286 5907683 ~ 5909339 (+)
G1585848 NA non-coding upstream 75524 5867887 ~ 5868101 (+)
G1585839 dkk2 non-coding upstream 94330 5846798 ~ 5849295 (+)
G1585560 NA non-coding upstream 137803 5804759 ~ 5805822 (+)
G1585922 NA non-coding downstream 24896 5990975 ~ 5992041 (+)
G1585923 lef1 non-coding downstream 28334 5994413 ~ 5995647 (+)
G1585939 NA non-coding downstream 76955 6043034 ~ 6043288 (+)
G1585940 NA non-coding downstream 79635 6045714 ~ 6045993 (+)
G1585947 NA non-coding downstream 116821 6082900 ~ 6083157 (+)
G1585804 NA other upstream 130772 5808978 ~ 5812853 (+)
G1585483 NA other upstream 228250 5643756 ~ 5715375 (+)
G1585375 NA other upstream 494687 5448476 ~ 5448938 (+)
G1584899 NA other upstream 815341 5121991 ~ 5128284 (+)
G1585983 NA other downstream 204005 6169580 ~ 6170827 (+)
G1586200 NA other downstream 395769 6361848 ~ 6362312 (+)
G1586672 NA other downstream 1088766 7054845 ~ 7056469 (+)
G1587727 LOC106598223 other downstream 2773465 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 2934907 8900986 ~ 8947363 (+)

Expression


Co-expression Network