LOC110497328 (hadh)


Basic Information

Item Value
gene id LOC110497328
gene name hadh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5972346 ~ 5975764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573383.2
TAGTCACGTGACCACTGCCACACAACGACCTTCCTACTTTCCATGGTGTCTGAGTGTCAGTCTGCCTGTACGTTCAGCCACAGCCAGCTCCTTCATTCTGGTGCGGTCCTCTCCGCATTGCAAACCATGGCTTTCTTCACTCACCAAGTCATCAGAGGTCTCTCCTCTTCTGCAGTCCGAAATGCAGCGATCAAACACGTTACGATCATCGGGGGTGGTCAGATGGGTGCAGGTATCGCACAGGTTGCTGCTACAACAGGCCATTCGGTGGTGCTAGTTGACACAAATGAGGAAATCCTGAAGAAATCCGCCAAGGGAATAGAAGGCAGCCTGAAGAGGGTGGTCAAGAAGAAGTTCGCTGACAAGCCAGATGCAGGAGCAGAGTTTATTGCCAAGGTGATGGCCAACGTGTCCATATCGACAGACGCAGCGTCTGTGGTGGGGAGTACAGACTTGGTGCTGGAGGCCATTGTGGAGAACCTCAAGATCAAACAGGGCCTCTTTGGTGCTCTGGACAAAGTGGCACCAGCACACACCATTTTCGCCAGCAACACATCCTCTCTGCCCATCACCGACATAGCCAGCTCCACCAGCAGGCTGGACAGATTTGGAGGGCTGCACTTCTTCAACCCCGTCCCCATGATGAAGCTGGTAGAGGTGATTGGAACATCAGCCACAAGCCAGGACACCTTCGATTCCCTCCTCGCTTTCAGCAAAGCACTGGGAAAGACGCCAGTGTCCTGCAAAGACACTCCTGGGTTCATTGTGAACCGTCTGCTGGTGCCCTACATGATGGAAGCCATCAGGCTACATGAGAGAGGCCACGGGTCAAAGGAGGACATTGATATTGCCATGAAGCTGGGAGCTGGGTATCCCATGGGGCCCTTTGAGCTGCTGGACTACGTAGGACTGGACACGGCTAAGTTCATCATGGACGGCTGGGTTGAGAAGGATCCTGACAACCCGCTGATGCAGCCCAGTGAGATGCTGAACAAGCTGGTGGCCGAGGGCAAGTTCGGCAAGAAGACCGGAGAGGGCTTCTACAAGTACAAGTAACCCTACCCCAGAATCAACACGAGCTGGAGCCTGTTCATTAAGGCACACCGTGACAAAACGGAAAATGAAAATAAGCGCTTCCGATTGGACAAGATCATGTAGTCCCTCCCAGTACTGATAAGGGCATGAATGATAATAGAAAAAAACGCGGGTTAATTTTGACAACGGTAGAACAGAGATGCAGCTGGTACGACCCACGGTGCCTTCCTGAAGAATGGTAGACCGATGTTATCAATTCAAATCTGTCTTTTGACTGTATATTCTGAATGTCATCTTTATGTGTGGTTTGTAAGTAACTGAGTTTGTGGCATTAAACTGACTTTTCCAAATGCTTCCCA

Function

symbol description
hadh Predicted to enable 3-hydroxyacyl-CoA dehydrogenase activity and NAD+ binding activity. Predicted to act upstream of or within fatty acid metabolic process. Is expressed in liver. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 4. Orthologous to human HADH (hydroxyacyl-CoA dehydrogenase).

NR:

description
hydroxyacyl-coenzyme A dehydrogenase, mitochondrial-like

GO: NA

KEGG:

id description
K00022 HADH; 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573383.2 True 1394 mRNA 0.51 8 5972346 5975764

Neighbor

gene id symbol gene type direction distance location
LOC118941430 LOC106602292 coding upstream 6267 5943625 ~ 5966079 (+)
aimp1a aimp1 coding upstream 165119 5783970 ~ 5807227 (+)
npnta npnt coding upstream 412122 5499157 ~ 5560224 (+)
LOC110497310 gstcd coding upstream 481161 5428914 ~ 5491185 (+)
LOC118941427 arhgef38 coding upstream 547953 5405466 ~ 5424393 (+)
LOC110497334 LOC106610305 coding downstream 147189 6122953 ~ 6151945 (+)
LOC110497332 LOC106610302 coding downstream 230529 6206293 ~ 6222302 (+)
LOC118941431 NA coding downstream 310417 6286181 ~ 6288416 (+)
LOC118941432 NA coding downstream 316305 6292069 ~ 6294461 (+)
sclt1 sclt1 coding downstream 1584646 7560410 ~ 7575349 (+)
G1585891 papss1 non-coding upstream 31275 5929874 ~ 5941071 (+)
G1585882 NA non-coding upstream 63007 5907683 ~ 5909339 (+)
G1585848 NA non-coding upstream 104245 5867887 ~ 5868101 (+)
G1585839 dkk2 non-coding upstream 123051 5846798 ~ 5849295 (+)
G1585560 NA non-coding upstream 166524 5804759 ~ 5805822 (+)
G1585922 NA non-coding downstream 15211 5990975 ~ 5992041 (+)
G1585923 lef1 non-coding downstream 18649 5994413 ~ 5995647 (+)
G1585939 NA non-coding downstream 67270 6043034 ~ 6043288 (+)
G1585940 NA non-coding downstream 69950 6045714 ~ 6045993 (+)
G1585947 NA non-coding downstream 107136 6082900 ~ 6083157 (+)
G1585804 NA other upstream 159493 5808978 ~ 5812853 (+)
G1585483 NA other upstream 256971 5643756 ~ 5715375 (+)
G1585375 NA other upstream 523408 5448476 ~ 5448938 (+)
G1584899 NA other upstream 844062 5121991 ~ 5128284 (+)
G1585983 NA other downstream 194320 6169580 ~ 6170827 (+)
G1586200 NA other downstream 386084 6361848 ~ 6362312 (+)
G1586672 NA other downstream 1079081 7054845 ~ 7056469 (+)
G1587727 LOC106598223 other downstream 2763780 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 2925222 8900986 ~ 8947363 (+)

Expression


Co-expression Network