LOC110497335 (LOC106610304)


Basic Information

Item Value
gene id LOC110497335
gene name LOC106610304
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 6165686 ~ 6168932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110497335
GATAGGCTTATTGCTGTCACGTGACTAATCCCACATCCGGAAAGAGAATTGCATGACAGGCGATTTGTTGACATCGAATAGGACCAATAGTGTAACATTTGGGAAAGTGTGAAATTATTTGTTTTACCGACGTTTGGTGCAGTCATTTAACTTTGGATTCACATGCCGACCAATTGCAACTATTTTCTAGCACCGGTGCTGTCATCATGCATCATAACAGTTGTATCCCGGGTTTTCTCGTTGGCTTACTATCTTTCTATGGATTTCTGAGCTGTGTGTCATGTAGTAAGGAACCTGAAACACCGGACTGGCGGATGACTTTAAAAACCATTCGCAATGGGATCCATAACATTGACAAATACCTCAACGTTGCTCTGGACTTATTTGGAGGACAAGATGGACTGTGTCACTATGAATGCAGCGATGGTTACAAACCAGAACCCCGGCCTGGTTACAAACCAAACCCACCCAATGGATGTGGGTCACCCCTGTTCGGATTCCAGTTTGACATCGGCATCCCGTCCTTGACCAAGTGCTGTAACCAGCACGACCGTTGCTATGACACCTGTAACCGTGATAAACACGACTGTGACGATGAGTTCCAGGAATGCCTGGAGACCATCTGTAGGAGATTACAGAAGATGTTGGGACTGGCCCAGAGTGTCCAAGcgTGTGAGAATACTGTGACCCTGCTGTTTGAGGCTGTCATGCACATGGGGTGTAAACCTTACATGGACAGCCAGAGAGACTCCTGCATATGCAAATTTGAAGTCAAGAGGGATCTATGAGTTGCCACCCAGAGGGGATTCTGGAATAGTCAAGCCACCAGAGAAACATTGAAATCAATACTGTATCTTGGGATAGAGCTGTGGAAGTTTCCATTGATAACAATGTGCTAAGCCTTGTGAAGGGGCCTGGATGTGCTCTCAATGAATGAACGTTGGGTGATCTGAGTTTTTAAATTGCTATTTGATAATTTTGTAGAATTGTTCTCCTATGCAAAGGTTGTTTAGTGGTTGTTGTCATGTATGTCATTTGTTTGTTCTGCCACACATTTATATGAAGTATAAATTAAGAGAGAATATAAATGTTTATAAAAGGTAAGAAGACATTGAATACAAATGTATGCACATAATGATACAGTGATGAGGGTAATGGCTACATTATACTGCCCAGTAAGTGTATTGTTTTGGTTACACttctgtaaccgatgtgaaatggctagctagttagcggtggtgcgcgctaatagcgtttcaatcggtgacgtcactcgcaaGGGCCGaggattttgtggagcgatgtttaacgatgcttcgtgggtgtcaattgtcaatgtgtgcagagggtccctggttcgagcccggcgaggatacggactaaagttatactgttacacttctCCGCCCATGCATTGGCTATGTAGACTGCTTTATTTCGCATGTGTGGCTACTGAATATGAGCAGCGAGAGCGGACACTTGTACATTCTCTTGAACTACGTTTTGCATATAGGATATAGCCTACATTTTAGGAGGATAATTTGCAGGCAGAGACAAATAAATGGGTAATTAATATTTATTGCAAATGAAAGGTTCGCTCACCATAGCCTATCCGCGCGTTACG

Function

NR:

description
LOW QUALITY PROTEIN: group XIIA secretory phospholipase A2

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110497335 True 1624 mRNA 0.44 4 6165686 6168932

Neighbor

gene id symbol gene type direction distance location
casp6 LOC100135902 coding downstream 10336 6149828 ~ 6155350 (-)
LOC110534562 lef1 coding downstream 130311 5977858 ~ 6035375 (-)
LOC110497325 papss1 coding downstream 222998 5908328 ~ 5942688 (-)
LOC110497321 dkk2 coding downstream 300847 5846783 ~ 5864839 (-)
LOC110514596 LOC106610360 coding downstream 381731 5722797 ~ 5783955 (-)
LOC110497340 djb14 coding upstream 1127 6170059 ~ 6181437 (-)
LOC110497330 LOC106610300 coding upstream 17346 6186278 ~ 6206025 (-)
LOC110497343 LOC106610301 coding upstream 53389 6222321 ~ 6243402 (-)
LOC110518704 bnc2 coding upstream 228210 6369407 ~ 6553918 (-)
LOC110514880 LOC106610486 coding upstream 881259 7050191 ~ 7086828 (-)
G1586041 NA non-coding downstream 17833 6146107 ~ 6147853 (-)
G1586122 NA non-coding downstream 43869 6121464 ~ 6121817 (-)
G1586112 NA non-coding downstream 60854 6104594 ~ 6104832 (-)
G1586111 NA non-coding downstream 61304 6104169 ~ 6104382 (-)
G1586096 NA non-coding downstream 94274 6071197 ~ 6071412 (-)
G1586140 NA non-coding upstream 14514 6183446 ~ 6183749 (-)
G1586141 NA non-coding upstream 16073 6185005 ~ 6185223 (-)
G1586151 NA non-coding upstream 48078 6217010 ~ 6217288 (-)
G1586152 NA non-coding upstream 50257 6219189 ~ 6219592 (-)
LOC110497317 LOC106593018 other downstream 521694 5635283 ~ 5667507 (-)
G1585234 NA other downstream 1017009 5148376 ~ 5148677 (-)
G1585201 LOC106610364 other downstream 1090080 5073480 ~ 5075606 (-)
LOC110498624 LOC106610319 other downstream 1249596 4895349 ~ 4916135 (-)
G1586357 NA other upstream 376291 6545223 ~ 6545867 (-)
G1586560 NA other upstream 710394 6879326 ~ 6879757 (-)
G1587221 NA other upstream 1604111 7773043 ~ 7773434 (-)
LOC110500908 LOC106592107 other upstream 1720046 7886301 ~ 7908783 (-)

Expression


Co-expression Network