LOC110497332 (LOC106610302)


Basic Information

Item Value
gene id LOC110497332
gene name LOC106610302
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 6206293 ~ 6222302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954094.1
TCAATCGGTAATTTCTCTTGTATTTTCCCATCTCGAGACACTTCATTACCCAGCGTTACCTGGGAGTTTTGACGTCATTTAGATGAAAAAATGGCGGCGGGCAGTAGCTCAAACGTGAACGAAAATATTCCAGTTTTTGAGTATAAAGACATAAACACCAAACCATTCCACGTTGGCTCATTCAGAACCGCATGGCTTGAGAAATTGAAACCAATTGACTATTCCTACGAGGATAAATACGAAGAGAATGAAGATGCCGACTTTGCAAAGGAAATGGGAATCGCACCAGAAACGTTGGATGAACTGAAAGCTATCTGCAGcgTTGACACTCTTCGGGGTCAAGCTGAAGATGAGCCTCTTGACACCAACGTTGTGCCACCTGACCCCACTCTTCAAACACTAATacagaggaagaagaagcAGGACTACAAAGGCACCCTGAGGATCGATAAGATAAGCAGAGTTGACCACTACCAAGACGAACTGGAGAGCCTAGCGGTGGGGAAAAGGCCTGAGGACCCTGCTGACTTGGTGCCAGAAGGGGAGATAATTTTGAGCATCAACGTTCTCTACCCAGCCATATTTGAGAGATTTAGGTATGTGAGGCCCCACATGACCCTTCAGATGCTGGGCTCCCATAGTCTGGTGGACCTGAGGGACGCTATCTGCTGTATCAGCGACCTGCAGGTCTTTGGAGAGTTCAGCAACACGCCCGACATGGCACCGGACTTCATCAGCAAGGATCATTTCAAATCCGCCTTCTTCTACTTTGAAGGGGTCTTCTACAATGACATGCGTCACCCTGAGTGTCAGGACATGAGCGAGACCACCATTGAATGGGCAAAGACCAGAGACTTCCCCACATTCCACAAGGCCAAGATGGAGGACACCAGGTTCTACGACCTGAAGGTGAAGGTGGGATACCCCTACCTCTTCTGTCACCAGGGAGACTGCGAGCACGTTGTCATCATCACCGATATCAGACTGGCTCATAAGGATGACTGCCTGGATAGGAAGTTGTACCCTCTCCTTACCCACAAGCACAGGGTCATGACCAGAAAGTGCGCTGTGTGTCACGTCTACATCGGCAGATGGTTAACCACAAATGATCCATTTGCCCCAAATGACCCGTGTCTCTTCTGTGAGCGATGCTTCCACATGCTTCACTATGACGAGAAAGGAAACAAACTAGGACAGTTCCTGGCCTACCCTTATGTGGACCCTGGGGCCTTCAACTGAGACcgtcctgtttctccctcctaCTGCTGTGCAGTATTAGTAATGGCACATAGGGCACATTTCTGTTGGCATTAAAGCACTTTATTTACTGTTCTATTTGTCTTGGGATTCATGATCACatggaaatgtttttgttgtagTCATAGAATTGTAAAGCTCATAGACTGTTCATTTCGGATAGATGAACCTTCAGTGGTGAGCTGGTGGTGTCACCAGCTCATGCTACTCATGAGAAGTTCACTTGAATGATTATAGCTCGTACGAAGAATTGGTTTCACTAATTAAAGTGGAAATCAGTGGGACAACACCCTTCTGTCTTCTACCTCTGGATAGGGATATCACGCCCTGCAAAAGCTCGAGTGGTGACTTGGAAGGGCACTCTAGCAACATCTTGATTCAAAACACATCAATGGAATAATCTTAACCGATCTGTTAAGCTACTGATGGCCATTTTAGACCGGAAAGCTCAGATCTGAGGCTAATAGTTTTCCGTGTGACCTGTTGACTTGACACAGTACTATTGATAGAAGCAATTTATTTGAATGCGTACAGATGAGGTCAATTATATTGGCGCCACTTGTACTTTGCAGTAGAGCAGAATGTTCTGCTTTCTCTTACCCTGTAGGCACCTGCAACTTACTACAGGTGACAAATGACTTAATGAGACTCATTGCCTCCAAATGAATGAATTTTGAATAAGCTAGTCTAGGCCATTTGACTTAAGTGAAAAATATTAATTTTGATTTGGTCCTGTGAAGTGTAAACAAGTtattaatttaaatgtattttgaagTGAATcatgcaagggtgccaatatttaACCACATCTAACATGAGTACTCATGTTTCAATAAACAAAATA
>TU1815854
gcacacagacagagcaacatagaacaaaaagcaacaagacaaaatccataaaagcaacagtgtttccacacctcataagctacagacaacatggaaagcggcaatacacagctagggattatgttcacatttctgattggcctttagccatgtattcatacattttgtgaaagtgtgataggtggtgcagttatgtgtgtctgatggcagtgtattccagacatgggaagctctcacagagaaagcagatttactaaaggtgcttttccttaagggaactatacagtcacctctcatggcagaccttgtggatctgctgccatatgtctgggttttctgtttaacaaaaatactgagtggagggggagccaggccatttaggatcttgaatacaagacgtgtcggtgtattgcacaagattttcccaactcaggagctcatgctttctgaggctgtaacagtgatgatggctattgggcttcctatcaagcactttgagagcctgtttgtagacagactgaatgggttttaatattgtacagcaagcttgggcccaactagtcaagcagtatgacaagtgggggagtatcatagatttatagtacagttttgctacctcctgtagtcaaacaatttcgtataaatcggataTCAGCTAGGTTGAATTtagttatttgaattacctttttcacctgctctttaaaagagaggttggaatcaagtatgatgccaaggtacttaatcagataccacctggagcttctcacctgacacagacatctggctcagtagcatctgttaccctctttgtgaagaacatgcagacAATtgttttcacattgagatgcaaacacgagtcactgagccactttgtaacttggaccattacagtagtgagttcttgtgcagcttgttgtctgctctttgcatgcacatatatcactatcatctgcatacatttgaacttcagacccagtacagacagaagacaGATCATTacacaggctgaacaggaggggccccagtattgacccttgtgGCACACCCACATCATGGCttagagtgggcgacagctcattgctcactccgacacactgagttctgtcttcaaggtatgatttcatccatctcaaggcattgGGGGGAAAaattgaacttggacaattttgtgatgagaatctcatggttaacagtatcaaaagccttcctcaGGTCTAGAAACACGGCCCTAACaacgccccctttgtccatcttgaaCTTCACAATTTCCAAAAGAAAGCAGTTGGCcttttctgtggagtgtttcgctctgaagccaaacagcatggagtgtaatgtgaaggggctgttgaggtgagcaatcagttgttctgctacacacttttcaacgaCCTtcgtgtagttactcacgttaGCAGAGTCGCccgatttaaagatggccgttattatggccgacttccatacccttggaaacacccccagaccaatagatgtgttggtgaccttagtaattgggccaatgagtgactctttgtagtttctaaggtagagtccagcgttctttagtgagctaatcacctttAAGCCCAAGTATAATCAAATCATTTCTCAGACAATGCTAGTAAGTATACTGTACAAAAGtatgaacacaacatgtaaagtgttggtctctcatgaaacatgagctgaaataaaagatcccagaaatgtttcatacacacacagcctatttctctaaaatgttgtgcacacatttgttgccaagataatccatccacccacctaacaggtgtgtcatatcaagaagctgattaaacagcatgatcgttacacaggtgcacattgtgctgggaacaataaaaggccactctaaaatgtgcagttttgtcactcaacacaatgccacagatatctcaaattttgagggagtgtgcaattggcatgctgactgtaataatgtccaccagagctgtttagGGCcgaattcatttatttcaatatgaactgtaactcagcaaaatcttaaATTGTTGCGCTTTTAGATTTTTGTTCTGTGTAAATTTAAGATGAATTTCCAAAGCGTATTTTCTGGGTGTTGGAGTTCAtttctcttcctctactttctactGTACTTTTCAAATTGGACAATAAAGTTGCATTGTACTATATTTCCAGGACCACCATTGAATGGGCAAAGACCAGAGACTTCCCCACATTCCACAAGGCCAAGATGGAGGACACCAGGTTCTACGACCTGAAGGTGAAGGTGGGATACCCCTACCTCTTCTGTCACCAGGGAGACTGCGAGCACG
>TU1815856
GGTTCCAGCCACTGTGGTAGATGTGTAACAAGGCTTGGTTTGGTTTCATTAGTGTGGACATGGTATGTTTTATTTTATCCCTGCTCAATGTTTCCAGACTGGCTCATAAGGATGACTGCCTGGATAGGAAGTTGTACCCTCTCCTTACCCACAAGCACAGGGTCATGACCAGAAAGTGCGCTGTGTGTCACGTCTACATCGGCAGATGGTTAACCACAAATGATCCATTTGCCCCAAATGACCCGTGTCTCTTCTGTGAGCGATGCTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954094.1 False 2101 mRNA 0.45 9 6206293 6222302
TU1815854 False 2312 lncRNA 0.42 3 6210519 6212889
TU1815856 True 268 lncRNA 0.47 2 6220956 6221355

Neighbor

gene id symbol gene type direction distance location
LOC110497334 LOC106610305 coding upstream 54348 6122953 ~ 6151945 (+)
LOC110497328 hadh coding upstream 230529 5972346 ~ 5975764 (+)
LOC110497324 LOC106602293 coding upstream 232814 5966198 ~ 5973479 (+)
LOC118941430 LOC106602292 coding upstream 240214 5943625 ~ 5966079 (+)
aimp1a aimp1 coding upstream 399066 5783970 ~ 5807227 (+)
LOC118941431 NA coding downstream 63879 6286181 ~ 6288416 (+)
LOC118941432 NA coding downstream 69767 6292069 ~ 6294461 (+)
sclt1 sclt1 coding downstream 1338108 7560410 ~ 7575349 (+)
LOC110516931 dnah6 coding downstream 1353180 7575482 ~ 7766837 (+)
LOC118941540 NA coding downstream 1815492 8037794 ~ 8043805 (+)
G1585997 NA non-coding upstream 7333 6198586 ~ 6198960 (+)
G1585995 NA non-coding upstream 11831 6194115 ~ 6194462 (+)
G1585991 NA non-coding upstream 19303 6186290 ~ 6186990 (+)
G1585989 NA non-coding upstream 22886 6183116 ~ 6183407 (+)
G1585983 NA non-coding upstream 35466 6169580 ~ 6170827 (+)
G1586019 NA non-coding downstream 28825 6251127 ~ 6251362 (+)
G1586181 NA non-coding downstream 93933 6316235 ~ 6316553 (+)
G1586192 NA non-coding downstream 114570 6336872 ~ 6337187 (+)
G1586221 NA non-coding downstream 229510 6451812 ~ 6452628 (+)
G1586255 NA non-coding downstream 342259 6564561 ~ 6564984 (+)
G1585804 NA other upstream 393440 5808978 ~ 5812853 (+)
G1585483 NA other upstream 490918 5643756 ~ 5715375 (+)
LOC110497310 gstcd other upstream 715146 5428914 ~ 5491185 (+)
G1585375 NA other upstream 757355 5448476 ~ 5448938 (+)
G1586200 NA other downstream 139546 6361848 ~ 6362312 (+)
G1586672 NA other downstream 832543 7054845 ~ 7056469 (+)
G1587727 LOC106598223 other downstream 2517242 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 2678684 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 2771152 8993454 ~ 9063965 (+)

Expression


Co-expression Network