LOC110497203 (LOC106602151)


Basic Information

Item Value
gene id LOC110497203
gene name LOC106602151
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 7552715 ~ 7560433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954108.1
AAACAGTTCCACCTATTTCCTGGAACACAGTTTAAACCTGGCATCAATCAATTAGATATGAAACGCCATTTCAATATGTAAACAAATGTACTTCGAGACTGTTGTACTGGGTTGCGTGCCAACTGATTCCGTAATTATTCCACCCAAGAACATCTGATAGGGAAGATATATCGTCATATGATCATACCAGGAAGTTGATACTCCATTGAAAGTGCATTATCTCTTTGGCACGAGCTACTGTATGTATTTTGATAACAAGCTAAATATATAGGCATCACACCAGCGCGAAACTGGATTAATCTTCTTACAAAACTGAGATGGAGTTTGTGATCAGCACCACATGGGACAGCCTTCCTGTGGATCATGACCCTGTGAAGGTGACGTTTTCTCccggggatggagggatgaagatgCAGGTGTCTGCTCCCTTCTTCAACAACCCTCCTGGTCCCTCCGGCCCTCCAGGACAGCCCTTCCCTGGCCTCTGGAACTAtgaagTGGTTGAGGCGTTCTTCCTGGACAGTACTACTGTGAACTATCTAGAGGTGGAAGTGTGTCCACATGGACAACACTTGGTGTTACTTCTCTCTGGAAGAGGTCACGCATTCATGCAACAACTGCCTCTGTCGTTCACGGCAACCATCACAGGAAACAGGTGGGAGGGTGAGGCTCTTCTCCCCTGGAGCTACTTCCCCCCTAACGTGAACAAGATGAACTCGTACGCCATCCACGGGTCCGGTGCGGGGCGTACCTACGAgtccctctaccccgtcccccaGGCTGACCTCGTGGAGGGGCAGAAGCCCAACTTCCACCTCTTGGAATATTTCCAAGACTTTCGCCTGCAAAGCATCATGGGAGGGGACTGGGTCCAGCCCGAGTCGGATCTCTGGAAGGGAAAGTGATGAGtcgggagaacacacacactggaacacacgCGCGTGATGACAGCGGGTGCGACCAAAGTCACGGAGGAGGAACGATCGATCTTGATTAGTTAATGATGTCAGACTGGATGAAATATGTTACCAGTTTGTCAGATGGTATTAACACCTCACCTCAAACTGCCTTTTACCAACTGCCTGAGGCCTGGTTCAAAACACACATGAAGGGGTTTCTAGTTTCTATTTTTCTATGAATGAAAGTGAGAATCAAAGTGTATTATATCTGTGCTTTCTGTTTTATAGATTTATGCctttctctctgaaatgaaaGACCATTGAATTTGATCATTTTCAATGCTACCTCCAATTCATTGTGGGAGTATCATTGTTATTCAATTAGATGAAGGCTCATCATGACGAGTTTACACTTTTGATTCATGGTTTCGTGCAATGCATTGATCACCACACACCAATATGTCTGTAATTCATCAATGTGACCAATTCTACTGTGCTGAAGCTGGAGTAAGGCTGTTTTGCTTCAATTACTCCCGAGCAAATGAAAATGGATTGtctggcatcccaaatggcatcctattccctgttttagtgcactacttttcagaAGTAGttaactacatagggaatagggtgccatttggcatgccAGACATTGAGATAATTAGTAGTCATTAGATAACGGCCATATGTGCCCTTTTTTTGTAATGATGTTAAATGAGCTCTTGGGTCGTCATTACTTCTGGGATCCATATAGGACTGTTGTCTTATGGAATGTTAATGTATGTAGATGGGCTGCAGTCTatcaaataaatacaataaataaacaGTG
>XM_036954107.1
ACAAACAGTTCCACCTATTTCCTGGAACACAGTTTAAACCTGGCATCAATCAATTAGATATGAAACGCCATTTCAATATGTAAACAAATGTACTTCGAGACTGTTGTACTGGGTTGCGTGCCAACTGATTCCGTAATTATTCCACCCAAGAACATCTGATAGGGAAGATATATCGTCATATGATCATACCAGGAAGTTGATACTCCATTGAAAGTGCATTATCTCTTTGGCACGAGCTACTGTATGTATTTTGATAACAAGCTAAATATATAGGCATCACACCAGCGCGAAACTGGATTAATCTTCTTACAAAGTAAGTAACGTTAGCCTTCCTATCAGTCATGATGCACCGATCGTGGACATCGGTGTCGCTAAAAGCGGTTATCTTCCTCTATGTACTTACATGCGCAGAACTTAAAATGACTGAGATGGAGTTTGTGATCAGCACCACATGGGACAGCCTTCCTGTGGATCATGACCCTGTGAAGGTGACGTTTTCTCccggggatggagggatgaagatgCAGGTGTCTGCTCCCTTCTTCAACAACCCTCCTGGTCCCTCCGGCCCTCCAGGACAGCCCTTCCCTGGCCTCTGGAACTAtgaagTGGTTGAGGCGTTCTTCCTGGACAGTACTACTGTGAACTATCTAGAGGTGGAAGTGTGTCCACATGGACAACACTTGGTGTTACTTCTCTCTGGAAGAGGTCACGCATTCATGCAACAACTGCCTCTGTCGTTCACGGCAACCATCACAGGAAACAGGTGGGAGGGTGAGGCTCTTCTCCCCTGGAGCTACTTCCCCCCTAACGTGAACAAGATGAACTCGTACGCCATCCACGGGTCCGGTGCGGGGCGTACCTACGAgtccctctaccccgtcccccaGGCTGACCTCGTGGAGGGGCAGAAGCCCAACTTCCACCTCTTGGAATATTTCCAAGACTTTCGCCTGCAAAGCATCATGGGAGGGGACTGGGTCCAGCCCGAGTCGGATCTCTGGAAGGGAAAGTGATGAGtcgggagaacacacacactggaacacacgCGCGTGATGACAGCGGGTGCGACCAAAGTCACGGAGGAGGAACGATCGATCTTGATTAGTTAATGATGTCAGACTGGATGAAATATGTTACCAGTTTGTCAGATGGTATTAACACCTCACCTCAAACTGCCTTTTACCAACTGCCTGAGGCCTGGTTCAAAACACACATGAAGGGGTTTCTAGTTTCTATTTTTCTATGAATGAAAGTGAGAATCAAAGTGTATTATATCTGTGCTTTCTGTTTTATAGATTTATGCctttctctctgaaatgaaaGACCATTGAATTTGATCATTTTCAATGCTACCTCCAATTCATTGTGGGAGTATCATTGTTATTCAATTAGATGAAGGCTCATCATGACGAGTTTACACTTTTGATTCATGGTTTCGTGCAATGCATTGATCACCACACACCAATATGTCTGTAATTCATCAATGTGACCAATTCTACTGTGCTGAAGCTGGAGTAAGGCTGTTTTGCTTCAATTACTCCCGAGCAAATGAAAATGGATTGtctggcatcccaaatggcatcctattccctgttttagtgcactacttttcagaAGTAGttaactacatagggaatagggtgccatttggcatgccAGACATTGAGATAATTAGTAGTCATTAGATAACGGCCATATGTGCCCTTTTTTTGTAATGATGTTAAATGAGCTCTTGGGTCGTCATTACTTCTGGGATCCATATAGGACTGTTGTCTTATGGAATGTTAATGTATGTAGATGGGCTGCAGTCTatcaaataaatacaataaataaacaGTG
>TU1817232
TTCACGGCAACCATCACAGGAAACAGGTGGGAGGGTGAGGCTCTTCTCCCCTGGAGCTACTTCCCCCCTAACGTGAACAAGATGAACTCGTACGCCATCCACGGGTCCGGTGCGGGGCGTACCTACGAgtccctctaccccgtcccccaGGCTGACCTCGTGGAGGGGCAGAAGCCCAACTTCCACCTCTTGGAATATTTCCAAGACTTTCGCCTGCAAAGCATCATGGGAGGGGACTGGGTCCAGCCCGAGTCGGATCTCTGGAAGGGAAAGTGATGAGtcgggagaacacacacactggaacacacgCGCGTGATGACAGCGGGTGCGACCAAAGTCACGGAGGAGGAACGATCGATCTTGATTAGTTAATGATGTCAGACTGGATGAAATATGTTACCAGTTTGTCAGATGGTATTAACACCTCACCTCAAACTGCCTTTTACCAACTGCCTGAGGCCTGGTTCAAAACACACATGAAGGGGTTTCTAGTTTCTATTTTTCTATGAATGAAAGTGAGAATCAAAGTGTATTATATCTGTGCTTTCTGTTTTATAGATTTATGCctttctctctgaaatgaaaGACCATTGAATTTGATCATTTTCAATGCTACCTCCAATTCATTGTGGGAGTATCATTGTTATTCAATTAGATGAAGGCTCATCATGACGAGTTTACACTTTTGATTCATGGTTTCGTGCAATGCATTGATCACCACACACCAATATGTCTGTAATTCATCAATGTGACCAATTCTACTGTGCTGAAGCTGGAGTAAGGCTGTTTTGCTTCAATTACTCCCGAGCAAATGAAAATGGATTGtctggcatcccaaatggcatcctattccctgttttag
>TU1817234
TATTTCCTGGAACACAGTTTAAACCTGGCATCAATCAATTAGATATGAAACGCCATTTCAATATGTAAACAAATGTACTTCGAGACTGTTGTACTGGGTTGCGTGCCAACTGATTCCGTAATTATTCCACCCAAGAACATCTGATAGGGAAGATATATCGTCATATGATCATACCAGGAAGTTGATACTCCATTGAAAGTGCATTATCTCTTTGGCACGAGCTACTGTATGTATTTTGATAACAAGCTAAATATATAGGCATCACACCAGCGCGAAACTGGATTAATCTTCTTACAAAGTAAGTAACGTTAGCCTTCCTATCAGTCATGATGCACCGATCGTGGACATCGGTGTCGCTAAAAGCGGTTATCTTCCTCTATGTACTTACATGCGCAGAACTTAAAATGGTAAGTTTAGTACAAGTTTTATGTTTTCCAAATTACTGCATTGT

Function

NR:

description
UPF0462 protein C4orf33 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954108.1 False 1731 mRNA 0.45 6 7552715 7560431
XM_036954107.1 False 1842 mRNA 0.45 6 7552715 7560433
TU1817232 False 862 lncRNA 0.46 2 7552955 7555464
TU1817234 True 451 lncRNA 0.38 1 7559968 7560418

Neighbor

gene id symbol gene type direction distance location
LOC110514880 LOC106610486 coding downstream 465887 7050191 ~ 7086828 (-)
LOC110518704 bnc2 coding downstream 998797 6369407 ~ 6553918 (-)
LOC110497343 LOC106610301 coding downstream 1309313 6222321 ~ 6243402 (-)
LOC110497330 LOC106610300 coding downstream 1346690 6186278 ~ 6206025 (-)
LOC110497340 djb14 coding downstream 1371278 6170059 ~ 6181437 (-)
LOC118941433 LOC106610372 coding upstream 213169 7773602 ~ 7873226 (-)
LOC110500908 LOC106592107 coding upstream 325868 7886301 ~ 7908783 (-)
LOC110512762 LOC108236415 coding upstream 377794 7938227 ~ 7981094 (-)
LOC110519453 LOC105024706 coding upstream 454066 8014499 ~ 8038114 (-)
LOC110518665 LOC106610407 coding upstream 581644 8142077 ~ 8171794 (-)
G1587139 NA non-coding downstream 737 7551636 ~ 7551978 (-)
G1587132 NA non-coding downstream 24868 7527522 ~ 7527847 (-)
G1587000 NA non-coding downstream 64135 7488320 ~ 7488580 (-)
G1586992 NA non-coding downstream 78252 7472471 ~ 7474463 (-)
G1586988 NA non-coding downstream 90118 7461856 ~ 7462597 (-)
G1587149 NA non-coding upstream 9509 7569942 ~ 7571739 (-)
G1587148 LOC106610543 non-coding upstream 11308 7571741 ~ 7573588 (-)
G1587184 NA non-coding upstream 99828 7660261 ~ 7660552 (-)
G1587189 NA non-coding upstream 121266 7681699 ~ 7683711 (-)
G1587190 NA non-coding upstream 121446 7681879 ~ 7682530 (-)
G1586560 NA other downstream 672958 6879326 ~ 6879757 (-)
G1586357 NA other downstream 1006848 6545223 ~ 6545867 (-)
casp6 LOC100135902 other downstream 1399914 6149828 ~ 6155350 (-)
LOC110497317 LOC106593018 other downstream 1908723 5635283 ~ 5667507 (-)
G1587221 NA other upstream 212610 7773043 ~ 7773434 (-)
G1587522 LOC106598223 other upstream 585824 8146257 ~ 8225033 (-)
G1587567 NA other upstream 683125 8243558 ~ 8334878 (-)
G1588003 LOC106610497 other upstream 1342422 8902855 ~ 8953676 (-)

Expression


Co-expression Network