sclt1 (sclt1)


Basic Information

Item Value
gene id sclt1
gene name sclt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 7560410 ~ 7575349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954105.1
CAGGAAATAGGTGGAACTGTTTGTATGTTTCTAATTTATGGGGGCAGAATAGGCGGTTGCACTTCTTTTTTGTGATTGGTTTTTCAGCCGTGCCCTTCTTTAAATCGACGGCGGAAGGATTATCGAGAAATTAAACGATTCAATGCAAGATGTCCACTGAAGTCGAGTTTTTGCGTGATCAAGTACAAAGGCTGAACTCTGCCTTGAGTCACTATCAGGATAGGCACCGCTCTGAAGccacatcagcaccacagGGTGAAGAGGAGACTCACGCAGAGACCCCAGCCCCCTGGCTGTCTGACCAGAGTATAATGGCTCCCCTCCTATCAGAGTATGACCGTCACATGGAAGACATGACTGAACAACTGCAGAGCTACCAGATGCAGATGACTGCCATCAGACTGAAGCTGGACACGGTGGTCAAGGAGAATGAACGGCTGCATGCCGAGCTGAGGGAGTCCGTAGAGAGGCAGCTGCAGACCCTCCCAGTCAGTACAGGATCAGGGGTGGAGGGGGACACACTGGGGGACGAGGGGCTCATCAGCAACCTTCACCAACAGATACAGCTCTCTGTACAGgagcgaGACCAGGCCATGGAGCTGTGGCGGGCCTCAGCCCAGGAGCTGGACCGTTTACAGCAGCTCTACCAGATAACCACCTCTGACGGACAGCTCCATGTTGCCGAGCAACAGCGCCTCAAGGATCAACTGATCCAATTCCAGCAGCACGTCCAGAAACTCCAAGTTACCAATCAGAAACTGGAATCTACCAACCAGCAGTTCCTGAAGACGCTGACAGAACAGAGCACGGATATGGAGGAGCTACGCAACCAGCTCAGATCGGCCAAAGCAGATCTGAGGATGGCCACAGCCAAGGTGGAGGAGATGACCAAGCTGATGCAGAACGTCCAGGACCAGATACAGAGACGGGAGGACGATGCAGCAGAGGCTCATGGTAGAGAGGAGGCCTCAGATCGAAGACTCCACCATCTCCAGTCAGCCCTCAGTCAGCTAGAGGCCAGGTTGAAGGCAGCCAGCCAGGAGGCTGAGGGTGTACGCAGGGAGCAGGTGGTGTGGGAGAGGCAGGTGGGGGAGCTGCAGGTGCGCTGTGCCTCTCTGGAGGAGGAGCGCTACGAGGCCTTCTCCAAGGTCAGAGACTCCATCCAGCTGGCTGAGGAGGCCTCTCTACAgaaggaccagGCCCtgttgagagagaaacagaaatctGAGGAGCTGGACAGGATGAATGAAGCCGTCAGACAACTGATCCAGGATGCTGCCATACGCACCAGGAAAGAGGTAGAGAACGTACGTAAACAGTGCAACTCACAGATCCATCGGATGGCTGAGGAGTTGTCGGCTCTACAACTGGAGTGTGCAGATAAAGAGTCTCAGATGGAGAGGTCCATGAGAGAGATGCGGGCAGTGGAGGAGGAACTGGAGAAGGTGTataaggagggtagaggagagccAGAGTACAGGAAGATGGAGGTCCTCCACCAGAGGTCTCTGAATGCTGAGAGACTGAAGGACGACATGAACATCACCCTGCAGAGCACACACAACAAGATGAAGAAACTGGAGATGGACTACAGTGAGGAGTTGTCCCGGTGCCAGGAGGAGGTGCGGCGGCTGCAGGGGTCTCTGTCTGCAGCCAGGGAGGACTGCAGCGGGGTCAGCGAGGAGCGGCTCCAGCTGCAGCAGGAGAACATGCAGCTCCGCAGGGAGATGGAGGAGCTACGCAAGGCTAGCATGATGACCCAGAGGAGAGCTAAGCAGCAGgttTCCCAGATGGAGCAGGAGTATTCCCTAAAGGAGCAGGGTCTGGAAGCCCGGGTCAGGGAGCTGGAGGAAAGCAGTAGGAGCTCCAGTGCTGACCTGACCCGCCTCCTCTCTGCCCAGCAGAAGACCAGCCAGCGCTGGAAAGAGGAGGCCAAGACCCTCACCCTGACCTTCCACACCAAACTCACCAGCCTCAAGGGTGAGCTGAGTCGACAGAAGCAACGTTGTCAGGAACTGGAGATCCAGCTGGTGACTGACCACGAGACCATAGTAGAGTACGAGAGGCAGATGGCAGAGTATCAGGAGAAGAACAGTCGTCTCCAGAGGCGTTTGACTCAGGCAGAACAGAAGGCAACTACAGCCTCACAACAGCTGAGTATAATGACGTCACAGAGGAGGAAAACATCGTCCATGGCAGACCTGGAGTCTCTATAGCGGTGTGCAGGGATGGAACCTAAGGATTTTGGGCACTTGTCCGCTGTGCcatataataatacaaaaatataaCATTTCACTAGCTGTTGGGCTAATTGGCTACATTTTCTACTAGCCAGTCTGAGGTGTACTAGCATCGGGCTAGCTTAATTTCCATCCCTGACTGTGTGCATTGCCAACCATTTCTACAGAAATGCCAATGTCTGTTATGGATTTATGCCATTCACTGTGATGTCTgttattaaaatatatttaaattgtc
>XM_036954106.1
GGCGGTTGCACTTCTTTTTTGTGATTGGTTTTTCAGCCGTGCCCTTCTTTAAATCGACGGCGGAAGGATTATCGAGAAATTAAACGTACAAAGGCTGAACTCTGCCTTGAGTCACTATCAGGATAGGCACCGCTCTGAAGccacatcagcaccacagGGTGAAGAGGAGACTCACGCAGAGACCCCAGCCCCCTGGCTGTCTGACCAGAGTCTGATGAAGGTGATTCCAGTGTTGTGGTTTGTGGATGTGTTCCAGTATAATGGCTCCCCTCCTATCAGAGTATGACCGTCACATGGAAGACATGACTGAACAACTGCAGAGCTACCAGATGCAGATGACTGCCATCAGACTGAAGCTGGACACGGTGGTCAAGGAGAATGAACGGCTGCATGCCGAGCTGAGGGAGTCCGTAGAGAGGCAGCTGCAGACCCTCCCAGTCAGTACAGGATCAGGGGTGGAGGGGGACACACTGGGGGACGAGGGGCTCATCAGCAACCTTCACCAACAGATACAGCTCTCTGTACAGgagcgaGACCAGGCCATGGAGCTGTGGCGGGCCTCAGCCCAGGAGCTGGACCGTTTACAGCAGCTCTACCAGATAACCACCTCTGACGGACAGCTCCATGTTGCCGAGCAACAGCGCCTCAAGGATCAACTGATCCAATTCCAGCAGCACGTCCAGAAACTCCAAGTTACCAATCAGAAACTGGAATCTACCAACCAGCAGTTCCTGAAGACGCTGACAGAACAGAGCACGGATATGGAGGAGCTACGCAACCAGCTCAGATCGGCCAAAGCAGATCTGAGGATGGCCACAGCCAAGGTGGAGGAGATGACCAAGCTGATGCAGAACGTCCAGGACCAGATACAGAGACGGGAGGACGATGCAGCAGAGGCTCATGGTAGAGAGGAGGCCTCAGATCGAAGACTCCACCATCTCCAGTCAGCCCTCAGTCAGCTAGAGGCCAGGTTGAAGGCAGCCAGCCAGGAGGCTGAGGGTGTACGCAGGGAGCAGGTGGTGTGGGAGAGGCAGGTGGGGGAGCTGCAGGTGCGCTGTGCCTCTCTGGAGGAGGAGCGCTACGAGGCCTTCTCCAAGGTCAGAGACTCCATCCAGCTGGCTGAGGAGGCCTCTCTACAgaaggaccagGCCCtgttgagagagaaacagaaatctGAGGAGCTGGACAGGATGAATGAAGCCGTCAGACAACTGATCCAGGATGCTGCCATACGCACCAGGAAAGAGGTAGAGAACGTACGTAAACAGTGCAACTCACAGATCCATCGGATGGCTGAGGAGTTGTCGGCTCTACAACTGGAGTGTGCAGATAAAGAGTCTCAGATGGAGAGGTCCATGAGAGAGATGCGGGCAGTGGAGGAGGAACTGGAGAAGGTGTataaggagggtagaggagagccAGAGTACAGGAAGATGGAGGTCCTCCACCAGAGGTCTCTGAATGCTGAGAGACTGAAGGACGACATGAACATCACCCTGCAGAGCACACACAACAAGATGAAGAAACTGGAGATGGACTACAGTGAGGAGTTGTCCCGGTGCCAGGAGGAGGTGCGGCGGCTGCAGGGGTCTCTGTCTGCAGCCAGGGAGGACTGCAGCGGGGTCAGCGAGGAGCGGCTCCAGCTGCAGCAGGAGAACATGCAGCTCCGCAGGGAGATGGAGGAGCTACGCAAGGCTAGCATGATGACCCAGAGGAGAGCTAAGCAGCAGgttTCCCAGATGGAGCAGGAGTATTCCCTAAAGGAGCAGGGTCTGGAAGCCCGGGTCAGGGAGCTGGAGGAAAGCAGTAGGAGCTCCAGTGCTGACCTGACCCGCCTCCTCTCTGCCCAGCAGAAGACCAGCCAGCGCTGGAAAGAGGAGGCCAAGACCCTCACCCTGACCTTCCACACCAAACTCACCAGCCTCAAGGGTGAGCTGAGTCGACAGAAGCAACGTTGTCAGGAACTGGAGATCCAGCTGGTGACTGACCACGAGACCATAGTAGAGTACGAGAGGCAGATGGCAGAGTATCAGGAGAAGAACAGTCGTCTCCAGAGGCGTTTGACTCAGGCAGAACAGAAGGCAACTACAGCCTCACAACAGCTGAGTATAATGACGTCACAGAGGAGGAAAACATCGTCCATGGCAGACCTGGAGTCTCTATAGCGGTGTGCAGGGATGGAACCTAAGGATTTTGGGCACTTGTCCGCTGTGCcatataataatacaaaaatataaCATTTCACTAGCTGTTGGGCTAATTGGCTACATTTTCTACTAGCCAGTCTGAGGTGTACTAGCATCGGGCTAGCTTAATTTCCATCCCTGACTGTGTGCATTGCCAACCATTTCTACAGAAATGCCAATGTCTGTTATGGATTTATGCCATTCACTGTGATGTCTgttattaaaatatatttaaattgtc

Function

symbol description
sclt1 Predicted to act upstream of or within clustering of voltage-gated sodium channels. Orthologous to human SCLT1 (sodium channel and clathrin linker 1).

NR:

description
sodium channel and clathrin linker 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954105.1 False 2478 mRNA 0.54 22 7560410 7575349
XM_036954106.1 True 2427 mRNA 0.54 21 7560461 7575349

Neighbor

gene id symbol gene type direction distance location
LOC118941432 NA coding upstream 1265949 6292069 ~ 6294461 (+)
LOC118941431 NA coding upstream 1271994 6286181 ~ 6288416 (+)
LOC110497332 LOC106610302 coding upstream 1338108 6206293 ~ 6222302 (+)
LOC110497334 LOC106610305 coding upstream 1408465 6122953 ~ 6151945 (+)
LOC110497328 hadh coding upstream 1584646 5972346 ~ 5975764 (+)
LOC110516931 dnah6 coding downstream 133 7575482 ~ 7766837 (+)
LOC118941540 NA coding downstream 462445 8037794 ~ 8043805 (+)
LOC110534596 LOC106596936 coding downstream 482949 8058298 ~ 8065704 (+)
LOC110534593 LOC106610539 coding downstream 496270 8071619 ~ 8136635 (+)
LOC110511263 LOC106577284 coding downstream 629103 8204452 ~ 8217573 (+)
G1587022 NA non-coding upstream 2025 7558182 ~ 7558385 (+)
G1587021 NA non-coding upstream 2462 7557707 ~ 7557948 (+)
G1587020 NA non-coding upstream 3193 7556830 ~ 7557217 (+)
G1587019 LOC106602149 non-coding upstream 4263 7555040 ~ 7556147 (+)
G1587017 NA non-coding upstream 8917 7551214 ~ 7551493 (+)
G1587030 NA non-coding downstream 14315 7589664 ~ 7590732 (+)
G1587033 NA non-coding downstream 30430 7605779 ~ 7608110 (+)
G1587051 NA non-coding downstream 84923 7660272 ~ 7661468 (+)
G1587025 NA non-coding downstream 195311 7770660 ~ 7771548 (+)
G1587027 NA non-coding downstream 196441 7771790 ~ 7772340 (+)
G1586672 NA other upstream 503941 7054845 ~ 7056469 (+)
G1586200 NA other upstream 1198098 6361848 ~ 6362312 (+)
G1585983 NA other upstream 1389583 6169580 ~ 6170827 (+)
G1585804 NA other upstream 1747557 5808978 ~ 5812853 (+)
G1585483 NA other upstream 1845035 5643756 ~ 5715375 (+)
G1587727 LOC106598223 other downstream 1164195 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 1325637 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 1418105 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 1767510 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 1848416 9422781 ~ 9425478 (+)

Expression


Co-expression Network