LOC118941433 (LOC106610372)


Basic Information

Item Value
gene id LOC118941433
gene name LOC106610372
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 7773602 ~ 7873226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954111.1
gtcAAAGGTACATCCAGCATCTGTAAGAAGAGTCGCAGCGTCCTCCTCGAGCCGAAGTTTGATCTCTGCGCGCAGACGACGGATTCTAATTCCACAAGTACGATGCGTCATCGGAAGTGTTTTGGGAATGTATGTACCGCCGTTTACCTGTGGACGGCGTTCTGCTTTAAAGGTTGTGTTGGTGGTCAGTACCAGCGGAAGCTGTACAAGGATCTGTTGACTAACTATAACCGTCTGGAGAGACCAGTGTTCAACGACTCAGCTCCTATACTGGTGGAACTGGGCTTCACACTGTTACAGATCATAGACGTGGATGAGAAGAACCAGGTTCTGATGACCAACGCCTGGCTGCAGCTGCACTGGACAGATACTTACCTCTCCTGGAACCCAGAGAACTTCCCAGGTGTTCAGAACCTTCGTTTCCCCTCCAATCAGATCTGGGTTCCTGATATCCTCCTCTACAACAGtgcaGACGAGAGGTTTGATGCTACCTTCCACACCAACGTCCTGGTCAACTCCTCTGGGTCCTGCCAGTACATTCCACCAGgtaTCCTGAAGAGTACATGCTATATCGATGTTCGCTGGTTCCCCTTCGACGTCCAGAAGTGTGATCTGAAGTTTGGCTCGTGGACCTACAACGGCTGGCTGCTGGACCTCCAGATCCTGGACGTAGACATCTCCTCATACATCCCCAACGGAGAGTGGGATCTCGTGGgTGTCCCAGTGAAGCGTAACGAGCTGTATTATGACTGCTGTAAGGAGCCCTACCCTGATGTCACCTTCACTGTCACCATGAGGAGGAGAACACTGTACTACGGTCTCAACCTGCTCATCCCCTGTGTCCTCATCTCTGGCCTGGCCCTGCTGGTCTTCCTGCTGCCTGCAGACTCTGGAGAGAAGATCTCCCTGGgtaTCACTGTGttgctgtctctgactgtcttcaTGTTGCTGGTAGCAGAAATCATGCCGGCTACGTCAGACTCTGTTCCTCTCATCGGCCAGTATTTTTCCTTCGCCATGATGATCGTGGGTCTCTCTCTCGTCGTCACGGTTCTCGTTCTACAGTTCCACCATCACGACCCTCACGGGGTAAAGATGCCTAAATGGATGAGAGTCATCCTCCTCAACTGGTGTGCCTGGTTCCTCCGCATGAAGAAGCCTGGCGAGGAACGCAAGACGACCACCAGCTCCACCGTCACCCCCAACACCAATACTACCCCCAGCTCCGCCACAGGAGGCTACAAGTACTCCCACCCTCCCCCTCACCACGCCAGCACCAGCTCCATCCAGATGGGCTCCATCCCTGGGGGACAGCCCTCCAATACCTCAACCACCAACGGCAACATGAACCTGTACTTCGGCTACCACTCCGTGGGTATGGGAGGGATGGGATCCCTCGGAGGGTCTCATGATAACCCCTGCTGCCCGCCTAGCAGTGACTCTTCTGGGGTTGGGGTCTGCAGTGGAGGGGCTGGGGGTGGTAGTCAGACCACGGGGACAGGTGGAACGTGTTCCCCCAACGAGGCGCTACTCTCTGACCGGGACGCGGGGATCCTCCGGAGGTTGACGGTGGACCAGATCCCGGAGATCGGGCGGATCCTGGAGGAAGTTCATTTCATCGCCCAGAGGTTCAGGGAGCAGGACGAGGGAGAGGCGGTCTGCAGCGAGTGGAAGTTTGCGGCGGCGGTCGTGGATCGTCTTTGTCTCGTGGCGTTCACCATCTTCTCCATCATCGGCACGTTCACCATCCTCATGTCGGCGCCCAACTTCCTAGAGGCTGTGACCAAGGATTACCTCACATAATGTGGCTTTTATCTCGGCTGGCTAATTGGGCTAACGCT

Function

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954111.1 True 1841 mRNA 0.55 10 7773602 7873226

Neighbor

gene id symbol gene type direction distance location
LOC110497203 LOC106602151 coding downstream 213169 7552715 ~ 7560433 (-)
LOC110514880 LOC106610486 coding downstream 686774 7050191 ~ 7086828 (-)
LOC110518704 bnc2 coding downstream 1219684 6369407 ~ 6553918 (-)
LOC110497343 LOC106610301 coding downstream 1530200 6222321 ~ 6243402 (-)
LOC110497330 LOC106610300 coding downstream 1567577 6186278 ~ 6206025 (-)
LOC110500908 LOC106592107 coding upstream 13075 7886301 ~ 7908783 (-)
LOC110512762 LOC108236415 coding upstream 65001 7938227 ~ 7981094 (-)
LOC110519453 LOC105024706 coding upstream 141273 8014499 ~ 8038114 (-)
LOC110518665 LOC106610407 coding upstream 268851 8142077 ~ 8171794 (-)
LOC118941542 LOC106610539 coding upstream 349205 8222431 ~ 8227044 (-)
G1587220 NA non-coding downstream 1295 7771697 ~ 7772307 (-)
G1587211 NA non-coding downstream 14721 7755101 ~ 7758881 (-)
G1587208 NA non-coding downstream 24322 7748961 ~ 7749280 (-)
G1587201 NA non-coding downstream 40423 7729529 ~ 7733179 (-)
G1587200 NA non-coding downstream 45764 7726658 ~ 7727838 (-)
G1587223 NA non-coding upstream 7533 7880759 ~ 7881863 (-)
G1587267 NA non-coding upstream 17530 7890756 ~ 7891299 (-)
G1587268 NA non-coding upstream 23190 7896416 ~ 7896676 (-)
G1587269 NA non-coding upstream 24502 7897728 ~ 7898132 (-)
G1587221 NA other downstream 168 7773043 ~ 7773434 (-)
G1586560 NA other downstream 893845 6879326 ~ 6879757 (-)
G1586357 NA other downstream 1227735 6545223 ~ 6545867 (-)
LOC110497340 djb14 other downstream 1592446 6170059 ~ 6181437 (-)
casp6 LOC100135902 other downstream 1620801 6149828 ~ 6155350 (-)
G1587522 LOC106598223 other upstream 273031 8146257 ~ 8225033 (-)
G1587567 NA other upstream 370332 8243558 ~ 8334878 (-)
G1588003 LOC106610497 other upstream 1029629 8902855 ~ 8953676 (-)
LOC118941443 NA other upstream 1094070 8965525 ~ 8971363 (-)

Expression


Co-expression Network