LOC110500908 (LOC106592107)


Basic Information

Item Value
gene id LOC110500908
gene name LOC106592107
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 7886301 ~ 7908783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954110.1
TGACAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTTTGACAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTTTGACAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGACAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGCCAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGCCAGGTAAGGACCAATCAGCTGATGACTACTAATGGCTGGCTTTGACAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGCCAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGCCAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGACAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGACAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGGCAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTTTGACAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGGCAGGAGTGGGTAGATGTGAAGCTCCAGTGGAACCCTGATGAGTATGGAGGAATCACCTCTATCAGAGTTCCCTCTGAAACAATATGGCTGCCAGACATCGTCCTCTATGAGAATGCTGACGGGCGTTTCGAGGGCTCCCTGATGACCAAAGCCATCGTGAGGTCAGACGGGACAATCAGGTGGACCCCTCCGGCCAGCTACAAGTCTTCATGCACCATGGACGTCACCTTCTTTCCCTTCGACAGGCAGAACTGCTCCATGAAGTTTGGCTCGTGGACCTACGACGGCAACATGGTGGACCTGGTCCTTGTGGACCACTACGTTGACCGTAAGGACTTCTTCGACAACGGTGAATGGGAGATCCTCAACGCCACCGGCGCCAAGGGCAGCCGGAGGGACGGGATCTACTGGTACCCCTTCGTTACCTACTCCTTCATCCTCAAGAGGCTTCCTTTGTTCTACACACTCTTCCTCATCATCCCCTGTCTCGGTCTGTCCTTCCTGACCGTGTTGGTGTTCTACCTCCCGTCTGACGAAGGAGAGAAGCTGTCTCTGTCCACGTCGGTCCTGGTGTCTCTCACCGTGTTCCTCCTCGTCATAGAAGAGATTATACCGTCCTCCTCCAAGGTGATCCCTCTGATTGGAGAGTACCTCCTCTTCATCATGATCTTCGTCACCTTCTCCATCATCGTCACGGTGTTTGTCATCAACGTCCACCACCGCTCCTCAGCCACCTACCACCCCATGGCCCCCTGGGTAAAAAACCTCTTCCTCCAGAGGCTACCCAGACTGCTTTGCATGAGGGGACACactgacagGTACCACTACCCAGACATTGAGCTGCGTAGCCCAGAGCTGAAGCCCCGCGGAGGTCCAGGGAGGAGGGGGGCGTCGGGCCAGGGCCAAGCCCAGCAGAGAGGCCCTGTCGGGGGGAAGGAGGATGAGAACCATGCCTGGTTGGCCATGCTGGAGAAAGCCACCAACTCAGTACGGTACATCAGCCGTCACATCAAGAAGGAACACTTTATCAGAGAGgtggtGCAGGACTGGAAGTTTGTGGCTCAGGTGTTGGACAGGATCTTATTGTGGGTGTTCCTCACTGTCTCCATACTGGGTACCATCCTCATCTTCACTCCAGCCATCACTTTGTACCTGACCACTCCCCCCTTCAACACATAGACCCTATCAgtagaccctaacccctatagACATAATCagtagaccctaacccctacaccctacaccctacaccctaacccctacaccctacaacACATAATCAGtagcccctaacccctacaccaggGTTCTTCTATGTTGGTCCTGATGGGCCCaaacacttctggttttcatcctctccttctaatAAGAGACTAGTCCAgtcctgggacaccaggtgagtgcaaCTGACTAGAATTGAACAGCCCTGCTCTACACCCTAAGCCCTACACCCTAAGCCCTACACCCTGCCTATTTCAGGGGTATTCAAATCTTACCCAACGAGGTCCGGAGTACTGCTTGTTTTCAGATTGTTATTTGAGGGCTCTACTccctaacccagtgtttcccaatcctggtcctatGGACCCAGAAGGGTGCACATTGTGGATTTTCCCCAGAAccaacacacctgattccactaatcaGGTTTGCAGTGTGTTGGTGCCAGTAGTGTAAAATACTGGTTGGTGCTGGGGCCAGGACCAGGATCAGTAAACACtgccctaacccctacaccctacatcctaacccctacatcctaacccctacactctacatcctaacccctaccatcctaacccctacaccctacatccta
>XM_036954109.1
CACGCGCACCCCCTGTCTCCATCACATTCCACCGTCTCCCCTCCCTCATCTGCCGCTGGGCCAGCCCCCCTACCGAACACCGGATTTTGAGCGCGTGCACCCGGTCGGCTTGCTCGAGCATCCACACTGGGACACAAATGGAAACTCTTAGGGGAAACCCAGAAATAAGAAGTCCTGCCGCTGTAAAACAGTTGTAATAATAATGGAGCAACAACAGCGTCGTTTTCTTCCCTGTCCGTCCTTCATAATTTAATCGTTACATCGTTCCGAAGCGCGGCAAAGCACGTCCCGTTGTTATACTAGCCTAGGCTACGGATCGACTGATTGTTGTGATACGGACGGATTTGTGTACGCAGGAGATGATATAACGCACCTTGAAGACGACTAGAACGAGAACGGGTAACTGGAGCCGCGCGAAGAGGAAGCATGAAGTTTGCGGTTGCAGTGTTGTGGCTGTTGTGGTTCTCGGTCGGCGATGCCACTATTGAAGctccagAGGAGTTTGTGTCTCTGGCTGAGATGGAGGATGCCTTGTTGAGGAACCTGTTTAGAGGGTATCAGAAATGGGTCCGACCCGTTCTGCACGCTAACGACACCATCACAGTACGGTTCGGACTCAAGATCTCACAGCTGGTGGACGTGGATGAGAAGAATCAGCTGATGACTACTAATGTCTGGCTATGGCAGGAGTGGGTAGATGTGAAGCTCCAGTGGAACCCTGATGAGTATGGAGGAATCACCTCTATCAGAGTTCCCTCTGAAACAATATGGCTGCCAGACATCGTCCTCTATGAGAATGCTGACGGGCGTTTCGAGGGCTCCCTGATGACCAAAGCCATCGTGAGGTCAGACGGGACAATCAGGTGGACCCCTCCGGCCAGCTACAAGTCTTCATGCACCATGGACGTCACCTTCTTTCCCTTCGACAGGCAGAACTGCTCCATGAAGTTTGGCTCGTGGACCTACGACGGCAACATGGTGGACCTGGTCCTTGTGGACCACTACGTTGACCGTAAGGACTTCTTCGACAACGGTGAATGGGAGATCCTCAACGCCACCGGCGCCAAGGGCAGCCGGAGGGACGGGATCTACTGGTACCCCTTCGTTACCTACTCCTTCATCCTCAAGAGGCTTCCTTTGTTCTACACACTCTTCCTCATCATCCCCTGTCTCGGTCTGTCCTTCCTGACCGTGTTGGTGTTCTACCTCCCGTCTGACGAAGGAGAGAAGCTGTCTCTGTCCACGTCGGTCCTGGTGTCTCTCACCGTGTTCCTCCTCGTCATAGAAGAGATTATACCGTCCTCCTCCAAGGTGATCCCTCTGATTGGAGAGTACCTCCTCTTCATCATGATCTTCGTCACCTTCTCCATCATCGTCACGGTGTTTGTCATCAACGTCCACCACCGCTCCTCAGCCACCTACCACCCCATGGCCCCCTGGGTAAAAAACCTCTTCCTCCAGAGGCTACCCAGACTGCTTTGCATGAGGGGACACactgacagGTACCACTACCCAGACATTGAGCTGCGTAGCCCAGAGCTGAAGCCCCGCGGAGGTCCAGGGAGGAGGGGGGCGTCGGGCCAGGGCCAAGCCCAGCAGAGAGGCCCTGTCGGGGGGAAGGAGGATGAGAACCATGCCTGGTTGGCCATGCTGGAGAAAGCCACCAACTCAGTACGGTACATCAGCCGTCACATCAAGAAGGAACACTTTATCAGAGAGgtggtGCAGGACTGGAAGTTTGTGGCTCAGGTGTTGGACAGGATCTTATTGTGGGTGTTCCTCACTGTCTCCATACTGGGTACCATCCTCATCTTCACTCCAGCCATCACTTTGTACCTGACCACTCCCCCCTTCAACACATAGACCCTATCAgtagaccctaacccctatagACATAATCagtagaccctaacccctacaccctacaccctacaccctaacccctacaccctacaacACATAATCAGtagcccctaacccctacaccaggGTTCTTCTATGTTGGTCCTGATGGGCCCaaacacttctggttttcatcctctccttctaatAAGAGACTAGTCCAgtcctgggacaccaggtgagtgcaaCTGACTAGAATTGAACAGCCCTGCTCTACACCCTAAGCCCTACACCCTAAGCCCTACACCCTGCCTATTTCAGGGGTATTCAAATCTTACCCAACGAGGTCCGGAGTACTGCTTGTTTTCAGATTGTTATTTGAGGGCTCTACTccctaacccagtgtttcccaatcctggtcctatGGACCCAGAAGGGTGCACATTGTGGATTTTCCCCAGAAccaacacacctgattccactaatcaGGTTTGCAGTGTGTTGGTGCCAGTAGTGTAAAATACTGGTTGGTGCTGGGGCCAGGACCAGGATCAGTAAACACtgccctaacccctacaccctacatcctaacccctacatcctaacccctacactctacatcctaacccctaccatcctaacccctacaccctacatccta
>TU1817337
TATTGTTCTGTTATAATGTTCTATGTTCTGTAGGAGTGGGTAGATGTGAAGCTCCAGTGGAACCCTGATGAGTATGGAGGAATCACCTCTATCAGAGTTCCCTCTGAAACAATATGGCTGCCAGACATCGTCCTCTATGAGAATGCTGACGGGCGTTTCGAGGGCTCCCTGATGACCAAAGCCATCGTGAGGTCAGACGGGACAATCAGGTGGACCCCTCCGGCCAGCTACAAGTCTTCATGCACCATGGACGTCACCTTCTTTCCCTTCGACAGGCAGAACTGCTCCATGAAGTTTGGCTCGTGGACCTACGACGGCAACATGGTGGACCTGGTCCTTGTGGACCACTACGTTGACCGTAAGGACTTCTTCGACAACGGTGTGTAGGAATAAAACACTCTTGAAGTAAAACGTCTTGCTACTCCAAAAGCTTCAGAAGTCAAGCAGCAAGATACTTGTTCTGACTACAGTAATATCTCACGGGTATACAGTGTATAGAGGGAAACGTAAGGCGGTTTCATTACCAGTTAATACATGTTGGTTAAAGACACCATTTCTACAAGAAACAGCAGGTGACTAACCCGGTTTGTCAGTCTCTTCCCACCACAGTTGATGAAGACGTTAATCAGTATGACAATGTCCTCtctatttttttacctttatttaactaggtaagtcagttaagaacaaattcttattttcaa
>TU1817338
GACCAATCAGCTGATGACTACTAATGTCTGGCTATGCCAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGCCAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGGCAGGTAAGGACCAATCAGCTGATGACTACTAATGTCTGGCTATGACAGGTAAGGACCAATCAGCTTCACTTGTTTCTAGAAGACTTCAAAATGGTGTTGTATTTATGTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954110.1 False 2407 mRNA 0.52 8 7886301 7895852
XM_036954109.1 False 2503 mRNA 0.53 10 7886301 7908783
TU1817337 False 704 TUCP 0.45 3 7888978 7893279
TU1817338 True 238 lncRNA 0.44 2 7895154 7895571

Neighbor

gene id symbol gene type direction distance location
LOC118941433 LOC106610372 coding downstream 13075 7773602 ~ 7873226 (-)
LOC110497203 LOC106602151 coding downstream 325868 7552715 ~ 7560433 (-)
LOC110514880 LOC106610486 coding downstream 799473 7050191 ~ 7086828 (-)
LOC110518704 bnc2 coding downstream 1332383 6369407 ~ 6553918 (-)
LOC110497343 LOC106610301 coding downstream 1642899 6222321 ~ 6243402 (-)
LOC110512762 LOC108236415 coding upstream 29444 7938227 ~ 7981094 (-)
LOC110519453 LOC105024706 coding upstream 105716 8014499 ~ 8038114 (-)
LOC110518665 LOC106610407 coding upstream 233294 8142077 ~ 8171794 (-)
LOC118941542 LOC106610539 coding upstream 313648 8222431 ~ 8227044 (-)
LOC110510381 LOC106591338 coding upstream 341799 8250582 ~ 8298883 (-)
G1587223 NA non-coding downstream 4438 7880759 ~ 7881863 (-)
G1587220 NA non-coding downstream 113994 7771697 ~ 7772307 (-)
G1587211 NA non-coding downstream 127420 7755101 ~ 7758881 (-)
G1587208 NA non-coding downstream 137021 7748961 ~ 7749280 (-)
G1587201 NA non-coding downstream 153122 7729529 ~ 7733179 (-)
G1587275 NA non-coding upstream 620 7909403 ~ 7909689 (-)
G1587282 NA non-coding upstream 19458 7928241 ~ 7928491 (-)
G1587285 NA non-coding upstream 19997 7928780 ~ 7930081 (-)
G1587288 NA non-coding upstream 21388 7930171 ~ 7932855 (-)
G1587339 NA non-coding upstream 25539 7934322 ~ 7957440 (-)
G1587221 NA other downstream 112867 7773043 ~ 7773434 (-)
G1586560 NA other downstream 1006544 6879326 ~ 6879757 (-)
G1586357 NA other downstream 1340434 6545223 ~ 6545867 (-)
LOC110497340 djb14 other downstream 1705145 6170059 ~ 6181437 (-)
casp6 LOC100135902 other downstream 1733500 6149828 ~ 6155350 (-)
G1587522 LOC106598223 other upstream 237474 8146257 ~ 8225033 (-)
G1587567 NA other upstream 334775 8243558 ~ 8334878 (-)
G1588003 LOC106610497 other upstream 994072 8902855 ~ 8953676 (-)
LOC118941443 NA other upstream 1058513 8965525 ~ 8971363 (-)
LOC110498432 NA other upstream 2228077 10134147 ~ 10145900 (-)
G1587267 NA non-coding downstream 3855 7890756 ~ 7891299 (-)
G1587268 NA non-coding upstream 845 7896416 ~ 7896676 (-)
G1587269 NA non-coding upstream 2157 7897728 ~ 7898132 (-)
LOC110500908 LOC106592107 other downstream 1875 7886301 ~ 7908783 (-)

Expression


Co-expression Network