LOC110534596 (LOC106596936)



Basic Information


Item Value
gene id LOC110534596
gene name LOC106596936
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8058298 ~ 8065704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036954119.1
GGTCTCTCAGACTATAAAAAACGTGGACACATTATTCCAATCTTACTTTGATGCTCATTCATTTAACATATTTGTATGCATCCGTTTTCAACTCTCAAAGACTGTGGTGGAGAATACAACAATGCAGACCATGGTTATTGATGACAACACGTCTCCCAACAAGCCCAGTGTTACATTTTCAGCTAATTTTCTGTGGTGGAAGAGACCCTCTGGAGttgctgcagtgtgtctggggctgctgtgtgttcttctattggctgggatcataggcctgtctgtctactATGGAGTCATTGATCATCACTACTCAacagagagagaccaacagaCCAGTTACAGCCTTCTGACTAAAGAAGGAGATCTGCAACCAACCAGTTATAATAACTTGACAAAAGAGGGAGACGAGCTACAGAGCAGTTACAACACCTTAACTAAAGAGAGAGACGAGCTACAGAGCAGTTACAACACCTTAACTAAAGAGAGAGACGAGCTACAGAGCAGTTACAACACCTTAACTAAAGAGAGAGACGAGATACAGAgcagttacaacaccctgactaaaggAGATCTGCAACCAGACAGTTTTAATAACTTGACAAAAGAGGGAGCCAAGCTACAGAGCAGTTACAACGCCTTAACTAAAGAGAGAGACGAGGTACAGAGCAGTTACAACACCTTAACTAAAGAGAGAGACGAGCTACAGAGCAGTTACAACACCTTAACTAAAGAGAGAGACGAGCTACAGAGCAGTTACAACAACTTAACTAAAGAGAGAGACGAGATACAGAgcagttacaacaccctgactaaagagagagaccagctacagaatagTCTCACCACGAGGACCAAAGACAGGGACCAGCAGCAAAATAGTCTTAAAGTTATGACTGCTGAAAGGGATCAATTAAAGAATAGTCTTAACTCACGgacaaaagagagagaccagttgCAGAATAATCTAAATACTAGGACCACAGAGAAAAACCAGCTACAGAATAGTCTAAATACAAGGACCACAGAGAGAAACCAGCTACAGAATAGTCTCACAACCAAAACTAAGGAGAAAGACCAGTTGCAGAATACTCTCACCACAATAACtcaggagagagaccagatacAGAATAGTCTAAATACCAGGACCACAGAGAGAAACCAGCTACAGAATAGTCTCACAACCAAAACTAAGGAGAAAGACCAGTTGCAGAATACTCTCACCACAATAACtcaggagagagaccagctacagaatagTCTAAATACAAAAACTAAGGAGAGAAACCAGCTACAGAATAGCCTAAATACcaggaccacagagagagaccagctacagaatagCCTAAATACCAGGACcaaagagagagatcagctacaaAATAGTCTCACTACAAGGACCAAAGACAGGGACAAGCAACAAAATAGTCTTAAAGTCATGACTGCTGAAAGGGATCAATTAAAAAATAATCTTAACTCACagaccaaagagagagaccagttacagaatAGTCTAAATACCAGGACCActgagagagaccagctacagaatagTCTAAATACCACAACCACTGAGAGAGACCAGTTCAAAACGAGGCTTAGGTTCTATGAGAAACCCTGTCTGGATGGATGGTGGAAGTTTGGCACCAGCTGTTATTATGTCTCCTCCACGATGAACACAGCTGGGGGCGGTCAGAGGGAGTGCAGAACAATGGGAGGAGAGTCGGTTATTATAAACAGCAGAGAAGAACAGATGTTTATCCATGGATTTAAGAAGAATGTCTGGATTGGTACATATAAAAAAGACAGAATCTGGCAGTGGGTTGACAGCACACCATTTAAACCTACATATTGGATGGAAGGGGAACCTAATAACTTGAATGACGAGGCGGCTTGTGTTGAGATCTCACAGACGGCATCAGACCCATTGAAGAGTTGGAAGGATGGACCGTGTATTCCAAAACACTGGGTGTGTGAAAAACCGTTCACACCGTAGTCTAATTATAGTAGCGAAGGTAACCCCATATCTTATGGAGTTGTTCTGGTTTTGCCTGTTAAtcttaacctgtttttgtttCTATGTGGAACTAACTACATTGAAAGATGTATTCCTGTCTTTAAAGAGACCAGTGCTATGTGGAGTCTACCGTTTATCAGGCCCAGGGGAGTGGAACTGTGGCCTCGTAGGCTCTAACTGTGGTTTACATTTTTACCTATATGGTGTACATATACCAATTTAACAAGATACTGTTTCATTGAAGTTTTTACAGCTATCAATACATTTGAAATGCAGCAGTGTTCTATGTTTGCTTCCATTCTGTTCCATATGTTCCATGTGTTCATTCTACTGATTAAATACATCTATATACTGTGA

Function


NR:

description
centrosomal protein of 135 kDa-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036954119.1 True 2368 mRNA 0.42 7 8058298 8065704

Neighbor


gene id symbol gene type direction distance location
LOC118941540 NA coding upstream 14493 8037794 ~ 8043805 (+)
LOC110516931 dnah6 coding upstream 291461 7575482 ~ 7766837 (+)
sclt1 sclt1 coding upstream 482949 7560410 ~ 7575349 (+)
LOC118941432 NA coding upstream 1763837 6292069 ~ 6294461 (+)
LOC118941431 NA coding upstream 1769882 6286181 ~ 6288416 (+)
LOC110534593 LOC106610539 coding downstream 5915 8071619 ~ 8136635 (+)
LOC110511263 LOC106577284 coding downstream 138748 8204452 ~ 8217573 (+)
LOC110513700 NA coding downstream 301716 8367420 ~ 8368960 (+)
LOC118941437 LOC106594846 coding downstream 433583 8499287 ~ 8506656 (+)
LOC110534718 NA coding downstream 542460 8608164 ~ 8609344 (+)
G1587336 NA non-coding upstream 25292 8031487 ~ 8033006 (+)
G1587297 NA non-coding upstream 44999 7951984 ~ 8013299 (+)
G1587317 NA non-coding upstream 62182 7995830 ~ 7996116 (+)
G1587314 NA non-coding upstream 69394 7988027 ~ 7988904 (+)
G1587290 LOC106602119 non-coding upstream 115728 7941693 ~ 7942570 (+)
G1587395 LOC106569656 non-coding downstream 25723 8091427 ~ 8210499 (+)
G1587400 NA non-coding downstream 50520 8116224 ~ 8120340 (+)
G1587401 NA non-coding downstream 73540 8139244 ~ 8218373 (+)
G1587433 NA non-coding downstream 152839 8218543 ~ 8219545 (+)
G1587434 NA non-coding downstream 153844 8219548 ~ 8221232 (+)
G1586672 NA other upstream 1001829 7054845 ~ 7056469 (+)
G1586200 NA other upstream 1695986 6361848 ~ 6362312 (+)
G1585983 NA other upstream 1887471 6169580 ~ 6170827 (+)
G1585804 NA other upstream 2245445 5808978 ~ 5812853 (+)
G1585483 NA other upstream 2342923 5643756 ~ 5715375 (+)
G1587727 LOC106598223 other downstream 673840 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 835282 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 927750 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 1277155 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 1358061 9422781 ~ 9425478 (+)

Expression



Co-expression Network