LOC110511263 (LOC106577284)


Basic Information

Item Value
gene id LOC110511263
gene name LOC106577284
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8204452 ~ 8217573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955473.1
atgtcggccttccgcatctgGCAGAACTACAGCGATGTTTGCCAGACCATTAGACATCTCACGAAAACGTGGCACACTATCTCACAGGCACACTCTATCAGTGTGCCTACACCACATCAGCTGCTGTTAGCTGGAACCAGCCACCAGGATTGGACCAAACCCAACATCATTACCAGATCTCCTACCACTGTCCAGGGACAGAACCACACATCACTACCACGTCTTCACACGTCATCACACGTCATCACTCTCTCTGACCTGGAACCTGCTACTCAGTACTCTGTCACTGTTTGCACTGTGCTGGAAAATGGAAAGCAAAGTCAACTGGTGTCCACAACCTTCACCACAAAACATGTTCAGTGGTGGAAGAGACCCTACAGAGTTGCTGCAGTGTTTGTTCTACTGGCTGTCATCATTGGCCTGTGGGATTCCTATGCAACTTCAGAGCgagaccagctacagaatagtctaactaccaggaccacagagagagaccagctacagaccagttacaacaccccgactaaagagagagaccagctacagatcagttacaacaccctgactaaagagagagaccagctacagaatcGTCTAAATACCAGGACCACAGaaagagaccagctacagaccagttacaacaccctgactaaagagagagaccagctacagaccagttacaacaccctgactatagagagagaccagctacagagtAGTCTAAATACCAGAACCACTGAAATAGACAAGTTGAAGAAGAGTCTGAACACTACAACTATGGAGCGTGACCAGCTACAGAAGGAGATAGAAAGACTGAACTGGGAGAACAAAGGGTCCTGTCCTGAAGGATGGAGAAGGTTTGGCTGCAGCTGTTACTACCTCTCTACTGAGAGGAAATCCTGGGAGGAGAGTAGACAGgactgtctggagagaggagcagatcTGGTGATCATTAACAGTGAAGAGGaacagACATTCATCAATGGGTTTAAATCAGTCAGTTATgtctggattggtctgactgactctgttactgaggggacctggaaatgggtggacggcaccccactgaccaccccaagGTATTGGTGGAGTGGAGAGCCTGGTGGTGGTACGTACCAGAACTGTGGGGAAATCTATTACATATCGTCAGGCCAAGGAGTATGGAGGGATTTGGGATGTTCGTTTTCACAAGAATGGATCTGTGAGAAATAGGCTTCTCATAGGTACTTTTAATGAACTCTCTACTGTATGTTAATGATGCTCTGTAGACTGGTGTGATTTGATAGAATGGTACTCTGAACTTCAGGTAGGAGAGAAACAAATGTTCacattcagacagacacacacacacaagaagacACTGATCTGAACCTGAGTCTCCCACAGGAGAAACCAACTTCTTCATTAGATAAGGAGGTAATCCTCTTGGGCCGAGAGCTGACACTGATTTTTGAAGTCGCAGGTTGGGCTGCCGCATCACGTGACCAGGAGCAACATGACTGACTACTGTCTGCTGCACAAGCTGACACACAATCATGTATTCATACTGTATGTCAAAAAGTGTGAATAAATAGGGGCATAACATCTGTAATCTAGAAGGACAAGACATCTCCCTGCCTCTTTAGGACAGTGAATTTTACAGTGTACATTTTAAAGGTCTACTCCTAAACTTGAAGAAAGAAAAACTGGTGTCAATAAGACATTGTGCCTTTTAAGACAGAGTGAATGTTACTATTTACATTTGAACTCATATCTTGTTCACTTCCTGTTTGTGGTGACAACACCAGAATGAAGGGTTGGATCATAACCATCAGTTATCAAAACAGTGTCTAAGGTTTTGCAACAAACAGGTCACGACCCCTGGTGACCTTTAATACAGGTAGTGATTAGATTCAACTGTTTTGAAAAGCAGATATTATTTAGCAAGTGAATGTAGTTGTTTAATGGTTGTATTATAtttcagagggagagacagaatcccaaatgataccctatCCCCTTTGTATTGCATTCCTTTTggtgagtagtgcactataaagggaatggggtgtcatttgggattctCTCACAGCCAGAGAGTTAGGCCGAATACAGGGAGAGACAGTTTACGCACGACTCACCATGGCCCAATGGAGGCCCGTTGAGGCTCTTCAGTTGGCCATCCCAAGATCTCAACAAAATCACAACAAGGAAAACAAAAAGACTATCCAAACCAACCTGGTTGGGAGTCTACTTTCATATAGCTTCTCTGATCAGTAATTACCTGTCAATCATCCATGCCTGAGAGCAACAGGGTTGGGAGGCTACTTTCATATAGCTTCTCTGATCAGTAATTACCTGTCAATCATCCATGCCTGAGAGCAACAGGGTTGGGAGGCTACTTTCATATAGCTTCTCTGATCAGTAATTACCTGTCAATCATCCATGCCTGAGAGCaacagggttgggatcaattccatttaaaaaagGAAACGCCACATGTACGTTTAAACATTTCTTAGAAAAGATTACAATGCATAGTCTTGGAGGTTGGCAGTGAgctaccctgaaggagcagaTCCTGAGTGAAGTGTCACATTCAGTTAATAATATAGAACTGTTCTGTAGAATAGACCACATGTAAGTACAGTGTGAATCCAATTGGCACAATATCTGCTGATGCGATCAAATGATGTCACCACACTCAGGTTTCTTTCATGAACTGGCTTCGCTTCATATCCATTCAGTCAATTCAAGAAATAAACAGAAATTCCTATTTAACATTGTTTCTCATAGACAACTCCAACTTCCAATTTCAACATTCTCATTACATAGACAAGCTTTGAGGAAAATGTATTTCAGTTTATTCACtgtattgaaatggaattgaccctaaACCTGGTGCGAAATCACTTTCTTAAAGGTCCAGTCCAACAAGAACTTGGCCCTGGCTGCTGCTGCCCCCTAGTGGTAGGATGTGAGACGTGGAAATAGACTTGATTTGTCCCAATCTCTCTTCCCACGACAagtttaaaagcattggattggtttAGGCATAGGCCATGGAACAAGTTTCCATACCTGGCATTTTCTTTCCAATttgacattttatttcacctttatttaaccaggtaggccagttgagaacaagttcaaatttacaactgcgacctggccaagataaagcaaagcagtgcgacacaaacaacaacacagagttacacatggagtaaaacaaacatacagtcaataacacaatagaaaagtctatatgcagtgtgCGCAAATTAGGTTTCCAAGAAGGGAAGTGAACACGTGCACACTACAGGAGAAGGGAGATATTGGCCCGCAACTTGTCGCATAAtccacatatctacctccattccTAACATTATTACACTGCGTCTCATACTAAATGTTGATTTTTTATGACAATTACAAAATGCAGAAAAATGGTTTGAAAGCATTTCTGTTGTGAAATGTTAACTAAAAAAGTAGACTCAGCAatatgacgtagatgcagaaagtaaaccgcatagtgggtcaatttcaacaacaactaagagcgttcttctctgctgttttggtgCCCTGGATACCACACTTTAAACAGCGTGATGCGAACCtgtgcacatgcgcagatactgtgtgtgactgcgAAGTGTTGCATCTCGTTAATCTCAATATCTCCGGTGCGGCCCGTGGCATCGTCATTTCACGGAGTCTACCTGGATGTGTTATATTTTCCTTGCGCCAAAATGACAGGTATATTTATCAATGGCTTGAGCAGGGAGGTCTAGATTGGACTTCAGCCATACAGAGGGAGTTTGGGAGTGGGTTGATGGcaccagtggtgtaaaaagtacccaattatcatacttgagtaaaagtaaagataccttaatagaaaatgactcaaataaaagtactccagtaaaatactacttgaataaaagtcaaaaagtatttggttttgaatataattaagtatcaaaagtaaatgtataaatAGTGGGTTGATGGGACACCTCATCTTATGGAGTTGTGTTGGATATACATTTCAAGTTTTAAGCagtttgtttttatttgtaattaaaCTGGCATATCAGAAATGTAtgtaatgtagtgcactaaatatatAATAGAAGTTAGCAGGTGTTATATTAGTGGTGAAGAATACATGTACACCATtgtgtaatgtattgtagtgaATGTGGGGACTAGTCCCTCATCCAGCAACTGTCAACCCAACACCTTAGTCGTTACACCAAGAGATATGAAACCATTGaagaggttgctaggtgttgggttaagGTCACTAtagtataaactcagtatagaccaggttatgaggttgctaggtgttgggttaaggtcactacagtataaact

Function

NR:

description
C-type lectin domain family 4 member M-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955473.1 True 4374 mRNA 0.42 8 8204452 8217573

Neighbor

gene id symbol gene type direction distance location
LOC110534593 LOC106610539 coding upstream 67817 8071619 ~ 8136635 (+)
LOC110534596 LOC106596936 coding upstream 138748 8058298 ~ 8065704 (+)
LOC118941540 NA coding upstream 160647 8037794 ~ 8043805 (+)
LOC110516931 dnah6 coding upstream 437615 7575482 ~ 7766837 (+)
sclt1 sclt1 coding upstream 629103 7560410 ~ 7575349 (+)
LOC110513700 NA coding downstream 149847 8367420 ~ 8368960 (+)
LOC118941437 LOC106594846 coding downstream 281714 8499287 ~ 8506656 (+)
LOC110534718 NA coding downstream 390591 8608164 ~ 8609344 (+)
LOC110498609 LOC106610517 coding downstream 394353 8611926 ~ 8626846 (+)
LOC110497214 LOC106610534 coding downstream 409721 8627294 ~ 8640224 (+)
G1587400 NA non-coding upstream 84112 8116224 ~ 8120340 (+)
G1587336 NA non-coding upstream 171446 8031487 ~ 8033006 (+)
G1587297 NA non-coding upstream 191153 7951984 ~ 8013299 (+)
G1587317 NA non-coding upstream 208336 7995830 ~ 7996116 (+)
G1587314 NA non-coding upstream 215548 7988027 ~ 7988904 (+)
G1587433 NA non-coding downstream 970 8218543 ~ 8219545 (+)
G1587434 NA non-coding downstream 1975 8219548 ~ 8221232 (+)
G1587439 NA non-coding downstream 27440 8245013 ~ 8245475 (+)
G1587440 NA non-coding downstream 32905 8250478 ~ 8255121 (+)
G1587445 NA non-coding downstream 51799 8269372 ~ 8280135 (+)
G1586672 NA other upstream 1147983 7054845 ~ 7056469 (+)
G1586200 NA other upstream 1842140 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2033625 6169580 ~ 6170827 (+)
G1585804 NA other upstream 2391599 5808978 ~ 5812853 (+)
G1585483 NA other upstream 2489077 5643756 ~ 5715375 (+)
G1587727 LOC106598223 other downstream 521971 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 683413 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 775881 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 1125286 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 1206192 9422781 ~ 9425478 (+)

Expression


Co-expression Network