LOC110534718


Basic Information

Item Value
gene id LOC110534718
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8608164 ~ 8609344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954150.1
atggcatgcccattcgtgcgagatgtggtggatgaagaagcacttgtgctgaggagagccttcaggtgagaaagggtctTCAGGGACCGGTTGGACCCACTGGCCTTCCCTGATGACCATCTATATGAAAGATACAGGTTTTTACAGGCAGATGGCATCAGGTATCTATGCAGACTACTGGGTCCCAGGATTAAGCACCGCACTGCACGGAGCCATGCACTGAGTGTGgagcaaatggtttgtgtggccttgcgcttttttgctagtggagccttcctgtactcagtgggggatgcagaacagctgaacaaggccacaatttgccgcacaataaggagtgtgtgtctggctatcaaagcattagcagatgtcttcatctccttccctggccacagaagactctgtgacatcaaagaggagttctataggattgcaggtttccccaatgtcattggtgcagtggactgcacacacataaggataaaagccccctcaggtgcccatgaggccgattttgtgaataggaaatcctttcacagcattaatgttcagatggtctgcaatgctgactgtgtgatcagcaatgttgtggcaaaatggcctggctcagtccatgactccagaatctttcgggcctctgaaatctatcagtgcctatcacaaggtgaattctctggtgtgttgctgggagacagggggtatggctgccagccttttctcctgacacctttcacagacccccaggaagcacagcaggcctacaaccatgcccatgccaggaccagggccagagttgaaatgacctttggcctcctgaaggcacgctttcactgccttcacaaattaagggtcagccctgttagggcatgtgatattactgtggcttgtgctgtcctccacaatgtggcctgcctgaggaag

Function

NR:

description
PREDICTED: putative nuclease HARBI1 isoform X1

GO: NA

KEGG:

id description
K23222 HARBI1; nuclease HARBI1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954150.1 True 921 mRNA 0.51 5 8608164 8609344

Neighbor

gene id symbol gene type direction distance location
LOC118941437 LOC106594846 coding upstream 101508 8499287 ~ 8506656 (+)
LOC110513700 NA coding upstream 239204 8367420 ~ 8368960 (+)
LOC110511263 LOC106577284 coding upstream 390591 8204452 ~ 8217573 (+)
LOC110534593 LOC106610539 coding upstream 471529 8071619 ~ 8136635 (+)
LOC110534596 LOC106596936 coding upstream 542460 8058298 ~ 8065704 (+)
LOC110498609 LOC106610517 coding downstream 2582 8611926 ~ 8626846 (+)
LOC110497214 LOC106610534 coding downstream 17950 8627294 ~ 8640224 (+)
LOC118941439 NA coding downstream 30965 8640309 ~ 8643621 (+)
LOC110497213 LOC106610529 coding downstream 61575 8670919 ~ 8707687 (+)
LOC118941438 LOC106610528 coding downstream 104342 8713686 ~ 8741009 (+)
G1587705 NA non-coding upstream 1055 8606128 ~ 8607109 (+)
G1587634 NA non-coding upstream 67520 8538037 ~ 8540644 (+)
G1587679 NA non-coding upstream 71667 8536240 ~ 8536497 (+)
G1587649 NA non-coding upstream 88000 8462433 ~ 8520164 (+)
G1587643 NA non-coding upstream 91909 8515794 ~ 8516255 (+)
G1587710 LOC106610491 non-coding downstream 43302 8652646 ~ 8653013 (+)
G1587711 LOC106610491 non-coding downstream 44171 8653515 ~ 8654106 (+)
G1587712 LOC106610491 non-coding downstream 44838 8654182 ~ 8654649 (+)
G1587720 NA non-coding downstream 56325 8665669 ~ 8666359 (+)
G1586672 NA other upstream 1551695 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2245852 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2437337 6169580 ~ 6170827 (+)
G1585804 NA other upstream 2795311 5808978 ~ 5812853 (+)
G1585483 NA other upstream 2892789 5643756 ~ 5715375 (+)
G1587727 LOC106598223 other downstream 130200 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 291642 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 384110 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 733515 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 814421 9422781 ~ 9425478 (+)

Expression


Co-expression Network