LOC110498609 (LOC106610517)


Basic Information

Item Value
gene id LOC110498609
gene name LOC106610517
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8611926 ~ 8626846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037645.1
TAATGTGTCTGATAAAGGGTCAGGCCTTTCCTGTGTCAGCCTGCACATAGCTGCAACCAGGACACAACCTCAGTCAGTGACTCCGCATAAAACTGCCAACTGGGACACCAGCCAACATGGAACACACTGAGGCATTCTCTCCAGCCGACAACATGGAACACACTGAGGCATTCTCTCCAGCCAACATGGAACACACTGAGGCATTCTCTCCAGCCGACAACATGCACTTTGGGAACCTGGCTTCAATCGGTGGGGGGGCAGCCTTTTAGGGAGGCAAGCAATTTAAACCAGTTAGAACCAGTGAGCCAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAGACAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAACCAGTTACAACCAGTGAACCAGTTAGAACCAGTGAGTAAGTCAGATGAGTTGAACCAGTgagcagacagagagaactaTGTGGTACTATAGAGACCAGAGAACTACGATGAACACTGTGTTCTGAGAGAGAAGACGACAGAGGCTTCCACTGTTGGCCCTTCTAcagGGGGCACCAATGCTGTGGTCAGAAATTGAgggacccaccaccactactaccgaGCTTCACCACCACCCCTCTGACCAGCAACACAAGTCCCATAGGAGGAACCCGAAAGTGAAGCAGGAAGTAAGCGGCAGTGGCAGCAGAAAGCATGCTGGGATGTGGGGGCGGGGCCAAGCTGCGCCACAGTTTGACGGTAGCCTCGGGATTCGTTGAAAACCTGTGTTTCTCGGGGATAGCGTACGGCTGGGCGTCGCTGGTGTTCATCCTTAAGAATGACGGCTACTTCAGTGACCTCTGTGACATCACTGCCAACGCCACTGACCCCGGTGACATTATCACGTTGTCAGGGGAGCGGCCCAGTGATAACATCATACAGTCAGactgtagTGGCCAGGATGAACAGTTCTCTCTGGTCTTCACCGTCGCCTCCTTCTCCATGAACTTCCTGCGTTTTCCTCTGGGCTTCCTGTTCGACCACTTCGGCACCATGGCGACCAGGCTCCTGGCCACATGTCTGTACACCACGGGGACCTTGTTGATAACTGTCTCCAGTCCAGagcagTCAGCGTTGCTGTTTCCTGCCATCTCGTGCCTGATCACATCTGGAATGTTGTTCTACACCACCAATGCTCAAGTGGGGAACCTGTTCGACAGCCACCGTTCCACGGTCATATCGGTCTACGCCGGGGCCTTCGACTCCTCCGCCGCTGTCTTCCTCATCATCAAGtttTTGTATGAAAGAGGGGTCTCTTTCCACTCCTCCTTCCTCGTTCTCTCCGTCTGCAGCGTCATCCACGTCTTCCGGACGTTCTTCCTCATGCCCAAGACCCACATCCCCTACCCACTCCCCGACAGATACGCTTACGGGGTGAGCTGCGGTGGCCGGcgttgggggagagggggagagagaggagaaaaggacggaggaggaggagagagaaaaggagatgtGAATGCCAAATATCAGAAGATTGCTGTGTTACAGAAGGCTGAGAGTGCCCTGCTGCAGTTGCAGGACAAAGCAGGACCTTCCAGACCCGATCAGCCTGAGAGAGttaCCAGTTTTAGGAGTTGTGTCCTGTCCTGGTTCTTCCTGTGGCACCTGGTCTGGGTGGCTGTCATGCAGTTCTGTCACTTCCTGTTCATCGCCACGGTGAACCCCATGCTCAACCGGCTGGCCAACAGAGACCAGACCCTGGtGAGTCAGTACACCAATGCCTTTGCCTTCACCCAGCTCTGTGGGGTCCTCTGTGGTCCCTGGAATGGCCTCATCATGGACAGACACAAGGGGAAGCCATTGGCTCCAGGAGAAGAAGCAAGAAGCCGACCtgcgctcctcctctctcttcctctcacctccctcattcactcactctctcttccacctctttctgacactctcccttctctctctccccctttctctcccgaAAGGAGAGACGAAGCAAGAAGCCGACCtgcgctcctcttctctctccctcttcctcacctCCCTCCAGTGCCTCCTCTTCTACGTctgcttctcctctcctctccttgctcTTCAGTACCTCACCTTCATCCTGCAAGTCCTCAACAGTGCCTTCATCTATGGTGGACACCAAGCCTTCCTCACCATCGCGTTTCCCGGCTGCCATTTTGGTAAGTTGTCTGGTCTGATAACATCTCTGTCAGCTGTGGTTCTGCTGCTCCAGTTCCCTGTTCTACACCTCATCAGAGAGTTGCTGCATGGAGACCCTATTTatgtgaaCGTGGGTCTgaccctcctcaccctcctcaccTTCATCCACCCCCTCCACGTCCACCTCCACTGCCGCTCTCTAGCCAGTCAGAGGAGGGCTAGGACCGAACAGGAAG
>XM_036954148.1
ATGTGTCTGATAAAGGGTCAGGCCTTTCCTGTGTCAGCCTGCACATAGCTGCAACCAGGACACAACCTCAGTCAGTGACTCCGCATAAAACTGCCAACTGGGACACCAGCCAACATGGAACACACTGAGGCATTCTCTCCAGCCGACAACATGGAACACACTGAGGCATTCTCTCCAGCCAACATGGAACACACTGAGGCATTCTCTCCAGCCGACAACATGCACTTTGGGAACCTGGCTTCAATCGGTGGGGGGGCAGCCTTTTAGGGAGGCAAGCAATTTAAACCAGTTAGAACCAGTGAGCCAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAGACAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAACCAGTTAGAACCAGTGAACCAGTTACAACCAGTGAACCAGTTAGAACCAGTGAGTAAGTCAGATGAGTTGAACCAGTgagcagacagagagaactaTGTGGTACTATAGAGACCAGAGAACTACGATGAACACTGTGTTCTGAGAGAGAAGACGACAGAGGCTTCCACTGTTGGCCCTTCTAcagGGGGCACCAATGCTGTGGTCAGAAATTGAgggacccaccaccactactaccgaGCTTCACCACCACCCCTCTGACCAGCAACACAAGTCCCATAGGAGGAACCCGAAAGTGAAGCAGGAAGTAAGCGGCAGTGGCAGCAGAAAGCATGCTGGGATGTGGGGGCGGGGCCAAGCTGCGCCACAGTTTGACGGTAGCCTCGGGATTCGTTGAAAACCTGTGTTTCTCGGGGATAGCGTACGGCTGGGCGTCGCTGGTGTTCATCCTTAAGAATGACGGCTACTTCAGTGACCTCTGTGACATCACTGCCAACGCCACTGACCCCGGTGACATTATCACGTTGTCAGGGGAGCGGCCCAGTGATAACATCATACAGTCAGactgtagTGGCCAGGATGAACAGTTCTCTCTGGTCTTCACCGTCGCCTCCTTCTCCATGAACTTCCTGCGTTTTCCTCTGGGCTTCCTGTTCGACCACTTCGGCACCATGGCGACCAGGCTCCTGGCCACATGTCTGTACACCACGGGGACCTTGTTGATAACTGTCTCCAGTCCAGagcagTCAGCGTTGCTGTTTCCTGCCATCTCGTGCCTGATCACATCTGGAATGTTGTTCTACACCACCAATGCTCAAGTGGGGAACCTGTTCGACAGCCACCGTTCCACGGTCATATCGGTCTACGCCGGGGCCTTCGACTCCTCCGCCGCTGTCTTCCTCATCATCAAGtttTTGTATGAAAGAGGGGTCTCTTTCCACTCCTCCTTCCTCGTTCTCTCCGTCTGCAGCGTCATCCACGTCTTCCGGACGTTCTTCCTCATGCCCAAGACCCACATCCCCTACCCACTCCCCGACAGATACGCTTACGGGGTGAGCTGCGGTGGCCGGcgttgggggagagggggagagagaggagaaaaggacggaggaggaggagagagaaaaggagatgtGAATGCCAAATATCAGAAGATTGCTGTGTTACAGAAGGCTGAGAGTGCCCTGCTGCAGTTGCAGGACAAAGCAGGACCTTCCAGACCCGATCAGCCTGAGAGAGttaCCAGTTTTAGGAGTTGTGTCCTGTCCTGGTTCTTCCTGTGGCACCTGGTCTGGGTGGCTGTCATGCAGTTCTGTCACTTCCTGTTCATCGCCACGGTGAACCCCATGCTCAACCGGCTGGCCAACAGAGACCAGACCCTGGtGAGTCAGTACACCAATGCCTTTGCCTTCACCCAGCTCTGTGGGGTCCTCTGTGGTCCCTGGAATGGCCTCATCATGGACAGACACAAGGGGAAGCCATTGGCTCCAGGAGAGACGAAGCAAGAAGCCGACCtgcgctcctcttctctctccctcttcctcacctCCCTCCAGTGCCTCCTCTTCTACGTctgcttctcctctcctctccttgctcTTCAGTACCTCACCTTCATCCTGCAAGTCCTCAACAGTGCCTTCATCTATGGTGGACACCAAGCCTTCCTCACCATCGCGTTTCCCGGCTGCCATTTTGGTAAGTTGTCTGGTCTGATAACATCTCTGTCAGCTGTGGTTCTGCTGCTCCAGTTCCCTGTTCTACACCTCATCAGAGAGTTGCTGCATGGAGACCCTATTTatgtgaaCGTGGGTCTgaccctcctcaccctcctcaccTTCATCCACCCCCTCCACGTCCACCTCCACTGCCGCTCTCTAGCCAGTCAGAGGAGGGCTAGGACCGAACAGGAAGTGACAAACTAAGGGTCAAAGGTCACGTGCAACAGGCTGGTGGGGATGTGACGACAACCAACAACAGTAGTGGTGcgtctcaatagtctaaagtcgcttcctctccttgtctcctttcctttgaTAACATTGATCTGATAAAATTGGTGGAAAACAcggtctgtgtcccaaatagtgCCCTATCCCCTACATGAGACATTACTTTTGATGggacctggttaaaagtagtgccctatattagggaatagggtgcattggGGCACAAAGAGGTGCCTCTGTAGGATGCCTTCCCTTCGCCATCTTGCTTTCACTTGTCCGATgtaggtgaaggagaggagacgaagAGAGAAAGCATCTTTAGACTGTTGGGATGCATCCAGGACAATTGACACTACATCATGGACAATGCCACTGACTTGAACAGTCAGTTCAAGGCAGGGCAAAGGAGGACAGTGACCAAAGTGAAGACCTACTGTAATGTGCGTGTTAACCTGTCTGATTGCAATAAAGAATACAACTAAACTGTGAA

Function

NR:

description
solute carrier family 43 member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037645.1 False 2452 mRNA 0.54 13 8611926 8626318
XM_036954148.1 True 2851 mRNA 0.53 13 8611928 8626846

Neighbor

gene id symbol gene type direction distance location
LOC110534718 NA coding upstream 2582 8608164 ~ 8609344 (+)
LOC118941437 LOC106594846 coding upstream 105270 8499287 ~ 8506656 (+)
LOC110513700 NA coding upstream 242966 8367420 ~ 8368960 (+)
LOC110511263 LOC106577284 coding upstream 394353 8204452 ~ 8217573 (+)
LOC110534593 LOC106610539 coding upstream 475291 8071619 ~ 8136635 (+)
LOC110497214 LOC106610534 coding downstream 448 8627294 ~ 8640224 (+)
LOC118941439 NA coding downstream 13463 8640309 ~ 8643621 (+)
LOC110497213 LOC106610529 coding downstream 44073 8670919 ~ 8707687 (+)
LOC118941438 LOC106610528 coding downstream 86840 8713686 ~ 8741009 (+)
LOC118941440 LOC106577279 coding downstream 157021 8778760 ~ 8802053 (+)
G1587705 NA non-coding upstream 4817 8606128 ~ 8607109 (+)
G1587634 NA non-coding upstream 71282 8538037 ~ 8540644 (+)
G1587679 NA non-coding upstream 75429 8536240 ~ 8536497 (+)
G1587643 NA non-coding upstream 95671 8515794 ~ 8516255 (+)
G1587665 NA non-coding upstream 122907 8487209 ~ 8489019 (+)
G1587710 LOC106610491 non-coding downstream 25800 8652646 ~ 8653013 (+)
G1587711 LOC106610491 non-coding downstream 26669 8653515 ~ 8654106 (+)
G1587712 LOC106610491 non-coding downstream 27336 8654182 ~ 8654649 (+)
G1587720 NA non-coding downstream 38823 8665669 ~ 8666359 (+)
G1586672 NA other upstream 1555457 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2249614 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2441099 6169580 ~ 6170827 (+)
G1585804 NA other upstream 2799073 5808978 ~ 5812853 (+)
G1585483 NA other upstream 2896551 5643756 ~ 5715375 (+)
G1587727 LOC106598223 other downstream 112698 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 274140 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 366608 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 716013 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 796919 9422781 ~ 9425478 (+)

Expression


Co-expression Network