LOC110497214 (LOC106610534)


Basic Information

Item Value
gene id LOC110497214
gene name LOC106610534
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8627294 ~ 8640224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037646.1
ATGTTGCATTATTATTGTAGACACAGGAACAGGGATTTGTTAACCGCTATGATCTGGGGTTTAAACTACCCAACCAGGTGTCCACTTACAGGCCACAGTGTTTAAACATATTACAATTCAATATCGCTATTTTTCCCTTTAAAAATTGCCATTATcaatatctagctagctaggctattcTAGCTAGAATGTCGGAGACCGTAATGTTTCAGACGCAGTTGTCGTCCATCATGGAAGCTCTATCCACCGCCGCCATGGCGGAGATAACCAAACTGGTGGACGAGTACTCCGCTTTTTTACGTGGGGAACTGTCACGTAAAAAACACGACAACGAAATCCTGATGAAAAAGCTGAAAGTAGTTGAAAACCGGTACCGGAAAAGGACATCTACGATTGAACACGGCGGGGACGGAGTTGGCACTGTGCTGCGCGAGAGACTTTGGAACGGGGGTTCCCTACCGCACCACACGCCCCAAACCAACAGAGAACACAAGCCCGACCCAGTCTTTACGCAGCAGGGTTGCAGCAGCGAGTGGAGTAATGGACCCGCGGCGCGGGAGGGACTAAGGACCGACGAGACCATTGTAACAGACAAGACGGCCGAACCAGTTACCATCAAAcaagagagactggaggaggacGTCCCAGGGGAATGTGGTGCTCCAAATGAACTGAGGATGAATGCTCCTGAGCGTTCCACCACTCCACTGGTCGCCCGGCAACCGCATCCCACTGATCAGAGCAGTTTTGAGGAGGACTGGGGGTTCCAGAGTACACCACCAGGGGGTAGAGATGAGCTCACTGACTCTATGGAACACAACATAGAAGTGGAACGTAGAACTATGGGACACCACATAGAACTGGAACATAGAACTATGGGACACCACATAGAACTGGAACATAGAACTCTGGACCATGACCTCAGTAGCAGCTCTCACTGCCTTGACCAGGAACAGCCTGTAGTAGTTGAGATCTGcctcaagagggagccagagagccCATGTCCAGACCTCAACCCACTACCGGGAGGAGAACCAGGCCTGGGGGTCGACCAGGGGGATCTGGGCCAAACGTACCCCGAGTATGCAGCACTGAACCTGGGGTACGGTGGCTACACAGACACCTCTGGTCTATTTTTCACCTACTCGTCAGAAAACCAACTACAACAACGCACTTCCTCCTCGACAACGACCACAGACGATTACGCATCGTTCCCGGGGAAACACTCCATCACCGTCATGCCCGGTCACCATGGAGACCAAAGAGGAAATGGTGGGACTGTCAGAATTCGAGCTCCCCTCAGtaaagagaaggaggggaggttCGTATGCAAACATTGTGGGAAGGGTTTCCCCTACATCAGCTGCCTTAAGCGGCACGCCCTCAACCACACGAGAGAGAGGACGCATCACTGTTCCATGTGTGGGCGGAGCTTCATCAGACCCAGTCACCTGAGGAGGCATGAACTGCTGCACACGGGGGTCCGACCCTTCGCCTGCGCACTATGTGGACGCCACTTCTCGCATGGCGCACACCTCCGAGCTCACATGAAGACACACACGTGATGGaagtgccctgtgtgtgtgtgacgtaatTGACTTCTTGTTTTACATATGATCTAAAGTTTTATGTGGAAAGACTTGAACCAGTTTTAAAAGGGGGGATTCCACGTCAATTCAACAGTTCAATACATACAGTAGACATCTGTTCTGTGGATTGGCCTTTATTGTAGCCTGCTGTGTTGCTAGGCAGTTTCTGAGTAAAATGCTGATGGTTGAGAGAGCTGCTTTCATTGGTCAAGTTACTTTTTAATTCCAGAAGATGTATTTTATTATTGCTGTCAAATCATATTCCAAGTTTGTATTTCCATTTTACAATTAATGACATTATCATCAGAAATCCCACACagagctgttcttaggcacaacatGGAGTGTCTGGACACAGCCcctagctgtggtatattggccatatagcacaaacccccgaggtgccttattgctgttataaactggttacaagTGTAATTAGAACAGGAAAAatgcatgttttgtcatacccctgGTATATGTctaatataccatggctttcagccaattaGCACTCAGGGCTCTACCACCCAGTTGATAATTAGATATAAGCAACTGGAGACAACTCACCACTCACCACCATATTTTGGTCCATGGACATGGTTCCAACATGGCCATTTAGCCAAGTCCCCAATGCCTGGCCAACGCTTGCACCATGAAGCGCAGGTGGAAAGACAGACAGCGAATGGACAGGCACATCGCGGCGCCTGCGCATAATGACGAGGTTTCTGTTTAGAGTTCTACCACAAATCAACAAGTGGATCGACATTAAACTAAGTGGGATCATTAAACAAGGGGGAAGATGAACAATCGCCTCTCTCAAAGCAAATGACAGGATCATTTATGAAATGGCAACAAAGGAATGAACAAAAGTCATGAGTTACACACtgaagaaaagagagggaaataAACACAAAGTGGAACAAAGTGGGCGGAAAGGAGAggaa
>XM_036954149.1
TGGTCCATGGACATGGTTCCAACATGGCCATTTAGCCAAGTCCCCAATGCCTGGCCAACGCTTGCACCATGAAGCGCAGGTGGAAAGACAGACAGCGAATGGACAGGCACATCGCGGCGCCTGCGCATAATGACGAGGTTTCTGTTTAGAGTTCTACCACAAATCAACAAGTGGATCGACATTAAACTAAGTGGGATCATTAAACAAGGGGGAAGATGAACAATCGCCTCTCTCAAAGCAAATGACAGGATCATTTATGAAATGGCAACAAAGGAATGAACAAAAGTCATGAGTTACACACtgaagaaaagagagggaaataAACACAAAGTGGAACAAAGTGGGCGGAAAGGAGAggaagtgagaaagaaagaggaagagaaacacaTCTACTAGAGGGGCTATTAGAGCAACCGTTCATCAGTTTACACTGCAGGTTGAGGAACGTCACACTCCTCGTGAGTTTAACCACTAGGCCTACTATTTTGACAACTAGTGTTAGTGTGCTATGATCTCAAATTCTACTGCGGCCACCACTTCAAGAATGAGTTGTTTGAAACGTGTCATAAAACGTGTCATCTGTAACTTCTTCTGATACTGCAAGTCATTCTATAGACAGTCTAATGATCTTCTACATTTAGATTTACAATTAGGTCATTTaacagaggctcttatccagagcaacacaAGTCTTCCAtcctaaaaaatacatttaaaaaacttgTTGAGAAGGGGAGTTAACCCGTATATTTTCTGATAAGTGCCGTTTGAATTGGAATGCCACGTCTTATCTCTCCCACCCAGCACTTCTTTCTAGTGATACAGCTACTTTTCAGCCAGACACTCTCAAATACTCAAAACAACTatcaagagggatagagagcgagggagagagcgagggagagagagagggagagagagagcgagggagggagggagagaacgagagggagagagagagcgagggagagagtaagggagagagagggagggagggcatatAGAAAAGTAAGACAAGAGTCAGAGGATAGAAAAAGGGTCTCTTTGAATACAGTCACCCACTAACCCCACATTAATAAGACAACAAGAACAGTCCTTTGAGTGACAGTTAAAcaggcagccagtcagtcagtcaaagcAGGGAGTCAGCCAGGCAAGTAGCTATCAGtcggtcagccagccagtcagagcaGGGAgtcagtccatctctctctcagtcggtcagccagccagccagccagtcagagcaAGGACTCAGTCAGCCAGGCaggtagctagccagccagtcagccagcctgtTAATCAGGGAGGATGCTGGGATGCGGTGGGGGTGGAGTGGGGTTGCGGTACAGGCTGACCCTGGCCACAGGGCTGGTGGAGTGTCTGTGTTTTGCCGGCGTGGTCTTCGGCTGGGCATCGCTGGTCTTCGTCCTGAAGACAGACGGTTACTTCACTGACCTATGTGTCAATCTGACTACTGGACCCAACAGTACAGTGGAAACAGacTGTAGTGGACAGGATGAACAGTTCTCCCTGGTCTTCACCGTCACCTCCTTTATGAACAACTTCCTCACGCTTCCCAACGGATTCATCTTCGACCGCTTCGGCACCATGGCAACGAGGCTTCTGGGAATATGTCTCTACACCACTGGTACACTGATGGTTGCCTTCTCCAGTTCAGctTTGTCCATGCTGCTGTTCCCAGCCCTGTCCTTCATCGCAGTGGGAGGTATATTGTTCCTCATCACAAACATACAGGTTGGGAACCTATTTGGCTCCCATCGTTCCACCATCATCACCCTCTATAATGGAGCCTTCGACTCTTCCTCGGCTGTCTTCCTCATCATCAAGGTGATGTATGAAGGAGGGGTCTCCCTCCGCTCCtccttcctcattctctctgtctgcagTGTCATCCACCTCCTCAGGACGTTCTTCCTCATGCCCAACACCCACATTCCCTACCCACTCCCCGAGGGCTTCACCTATGGCGTAAGCCCTGGAAAGTCCAACAGCTACAACGTAGAGGAGATTGAGAAGACGCGAGAGACGGGGATGACATCGgagggggaggggccagctgagacTGACGACATGCCCCTACAGCCTGATGATGGGCAGCAGTCAGAAGACTCTGGGAAAGtggccAGTTTCAGGAGCTGTGTGCAGTCGTGGTTCTTCCTGTGGCATCTGGTGTGGCTGTCTGTCATGCAGCTGAGACACTACCTCTTCATCGGAACACTGAACCCCATGCTCAACCGGCTGGCCGACAACAACTCAGCCCTGGtgaGTCAGTACACCAATGCCTTTGCCTTCACCCAGCTGTGTGGGGTCCTCTGTGCTCCCTGGAACGGCCTCATCATGGACAGACACAAGGGGAAGCCTCTGGCTCCAGGAGAAACAGATAAGGAGGCAGACCtacgctcctcctctctctccctcttcctcacctccctccagtgcctcctcttctccatctgcgcctcctctcctctcctccctctccagtacCTCACCTTCATCCTGCAGGTCCTCAACCGCTCCTTCCTCTACGGAGGCAACGCAGCCTTCATCAGCATCGCTTTTCCTGGGGTCCACTTTGGGAAGCTGTATGGTTTGGTGATGTCTCTGTCTGCCGTGGTGTCACTGCTGCAGTACCCCTGTTTCGCCCTGGTCAAAGGAGCCCTAGGTGGAGACCCCTTCTATGTGAACATCGCTCTGACTCTCCTCACTCTACTGGCGTTCATCCATCCAATCAACATCTTCTACCACTGCAGGAAACTGACCAATCAGAGGGAGGATATGGCCGGAGGTGCTGACATCACATTGGCTGAGGCCAAAATGTAGGGCACATTACATGATGGTCCTGAGCCAAGGGAAACAGGAATTGTCTTATTTCTAATTGTTTAAAGGGAATATGTGAATATGTAAAATAATAAAACGCTTTTTTATACTTATGTTTTACAGTAATCCCATATTCCATCAGTATGTTTTGTTGGATAGTTGTCAATAAAAATTATTATCCATTATT

Function

NR:

description
solute carrier family 43 member 3-like

GO: NA

KEGG:

id description
K08230 SLC43A3; MFS transporter, LAT3 family, solute carrier family 43, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037646.1 False 2536 mRNA 0.48 5 8627294 8632112
XM_036954149.1 True 3031 mRNA 0.50 13 8631180 8640224

Neighbor

gene id symbol gene type direction distance location
LOC110498609 LOC106610517 coding upstream 448 8611926 ~ 8626846 (+)
LOC110534718 NA coding upstream 17950 8608164 ~ 8609344 (+)
LOC118941437 LOC106594846 coding upstream 120638 8499287 ~ 8506656 (+)
LOC110513700 NA coding upstream 258334 8367420 ~ 8368960 (+)
LOC110511263 LOC106577284 coding upstream 409721 8204452 ~ 8217573 (+)
LOC118941439 NA coding downstream 85 8640309 ~ 8643621 (+)
LOC110497213 LOC106610529 coding downstream 30695 8670919 ~ 8707687 (+)
LOC118941438 LOC106610528 coding downstream 73462 8713686 ~ 8741009 (+)
LOC118941440 LOC106577279 coding downstream 143643 8778760 ~ 8802053 (+)
LOC118941441 NA coding downstream 179918 8820142 ~ 8824446 (+)
G1587705 NA non-coding upstream 20185 8606128 ~ 8607109 (+)
G1587634 NA non-coding upstream 86650 8538037 ~ 8540644 (+)
G1587679 NA non-coding upstream 90797 8536240 ~ 8536497 (+)
G1587643 NA non-coding upstream 111039 8515794 ~ 8516255 (+)
G1587665 NA non-coding upstream 138275 8487209 ~ 8489019 (+)
G1587710 LOC106610491 non-coding downstream 12422 8652646 ~ 8653013 (+)
G1587711 LOC106610491 non-coding downstream 13291 8653515 ~ 8654106 (+)
G1587712 LOC106610491 non-coding downstream 13958 8654182 ~ 8654649 (+)
G1587720 NA non-coding downstream 25445 8665669 ~ 8666359 (+)
G1586672 NA other upstream 1570825 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2264982 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2456467 6169580 ~ 6170827 (+)
G1585804 NA other upstream 2814441 5808978 ~ 5812853 (+)
G1585483 NA other upstream 2911919 5643756 ~ 5715375 (+)
G1587727 LOC106598223 other downstream 99320 8739544 ~ 8844780 (+)
G1587790 LOC106610525 other downstream 260762 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 353230 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 702635 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 783541 9422781 ~ 9425478 (+)

Expression


Co-expression Network