LOC118941438 (LOC106610528)


Basic Information

Item Value
gene id LOC118941438
gene name LOC106610528
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8713686 ~ 8741009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954147.1
GTAAATTCGACaacttttctctctttctgtggcTTCACACAGGTTGTTCGACTTGCAAGACAGCAGGAGAAATGGACTGGCTGATTCCTCCTAATGACCCGGctggacatgactccaacacgGTCACCAGGAAGGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGTCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGTCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGCCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGCCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGCCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACAAGTCCTCTTCAGGATTGTGAGACCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGGGGGCTGAGGGTGAAGCCATCCCTAAAAAAAGACGTAAAGTTGGGTCACCAAACAAGGATCTTGTTGAGACCATGGACCCTGATATGAAGAGGTCTTGTACTACTAGGGGCCCTCCAGAGAGCGCAGAGTCTATTTCCTCTGGTTTTCTATCAATGACGACTGACAAATCCATGGATTTCCCTCTTAATTTCAAAGGAGCAGACTCTCTACAAAACAAAGGGCCAGTAGAGGTACCCTGTGATATCTGCTCTGAGGTCCAAGCTGTGAAGTTCTGTCAGACCTGCAGTGTGTCCTACTGCGGGGCCCACATCAGACAGCACTATACAATACCTaaactacagaaacacacactggTGGATGTGACTGGAGACCTGGTGCAGAAACTCTGTCAACATGTCTACAGTCCTCTGGAGGTGTTCTGTAGGACAGACCAGATGCTGATCTGCAGTCAGTGTGCAGAGACAAACCACAAAGGACATGATATGATCTCCCATGATATAAAGAAAGCAGGAAGACAGCCTAAGAGTTTTGATAGAGACCAACACACAACGTTGGCCGCGGATGATGTGCTGCCCCCTCCTGGTGACATCCAGGTCCTGTTGCTGACATCAGACTCTGTGTCTCTGAGCTGGGGTCCTCCTGAAGGGTTGAAGGGACCACAGAAGTTCAGAGTGACCTGGGGTTGTGACGTGGAACCGTGCAGTATAGGGGTGAAACATGTTCATGAAGTTGAAATAAGCAGACTCAACCCTGGTAAAAAGTACCAGTTCAGTGTGGCTACAGAGGGAGAAGATGGAAGCCAAAGCAGATGGAtctcagcatccctatccgcAGTACCCCCTGTTCCAGACCAGCTGACTGTTGACTCAGTGGATACCACATCAGCTGCTGTTAGCTGGAGCCAGCCACCAGGATTGGACCAAACCCAACATCATTACAAGATCTCCTACCGCTGTCCAGGGACAGAACAACACATCACTACCACATCTTCACACAGCATCACTCTTTCTGACCTGCAAGGTGGTACTCAGTACTCCGTCACTCTCTGCACTGTGCTGGAAGATGGAAGGCAAAGTCAACTGGTGTCAACAACCCTCATTACAAGATCCTATCTGATGGATCTGTTGTCAAAGACTGGACTGGAAGATCATTATGAAAACAAGCTGACGTTAAGTACTGTCCTTGAGATAAATGCTGATACTACATCAGATGAACCTCTTACCACTATGCAGGCACTTCCAGGGGCCTTCCTGAAGAAATTAATGATGGCAAATCTGAATGCTAGGAGTGTCAAATGTATGTCCTCTGACACAGATGTTTCATTTCCGGGTACAGACCGTTTTGAGAATCTAAAAAGTGACTCTGCTAACAGTAATGTCATTAATCCACTGGACCTGATTACAGCCCTGTTTCTGTGTTCAGATGGTTTCCTGCAGCAGGAGATGGTCCAGAAAATGTCCATGTGTCAGTTTGCTGTTCCTCTGCTGCTGCCCAACTGTGACACAAAACAAATCACTTTGATGCTGTGGGCCTTGAGGGACATAGTGAAGAAGTTTAGACTCTCTTCCCAAACATCCACAAAGGCTTTTGTGGAGGAGAGAATTGTACTCTCTGATATTCCCATGGTGTCCTTTGTTAGGTTAGGTGAGATTAGAGTGTCCAAGTCTCATATTTTGAACAAGTTGCTTAGTAACCCTCAGCAGTACCATGACACATTTGTTCATCATGATATGGAATGTGGCGATGTCCCCCATAGAATCTCAGATGGTCTGGTTGAAATCAGCTGGTACCTTCCATGTGGGAACAGAAACATAGACATTTTCACTAAGCCTGTGGCGGTGGCCAATCtcagaggagacatcaggtcctTTAAAACACAGTTCTCCTTTCTGTGTCAAACATCAGCTGCAGTTTACATTTTCACTGATGATTTCGAGTCAGATCTCAATTTGTTCAAAAGCAAAAACACAAAAGCAGAGATATTTCTGGTCGTCAACTCTCAGAGAAAATCATTCAGAGTAGACACATTAAAACAAATGATCACAAACTGCAGTATCAATGAGCAAAATGTGATTGTTAAGAAAAAGAAAAACGATGCAGAATTTGTCAAAACGCTGCAATCATCTGTTGGTGACATCATTGAAAATAGTCCAGACCGGTTGACAGTGGAAAACATGACTGACATAGCTCGTCACAGTGGGATTCTGGTTGATGAAGACCGCCATGACTGTCAGAGTGCCAGGAAGATGGCAGATGAAATCACCAGCAACATCACAGACACAGTCAAATTTAAAGACAAACAGCTACCCTTACAGGGGCAAATCTGGAAAAAGCTTTCCCAGTTGGAGAAAGAGCGATGTAGGCTGAGAAAAGCAGGGGATCAAGACAGCTCTCTGAATACAAAGGAGGAAGAGCTGAGAAAGAAACAATATACATTTGACATGTCAGATGCAATGGAAAGCTTCATTTCAGGATTGTCAGGTTCAGGACCTGAGCGTTCCTATTTCCTCAAATGGATGCGGATAAATCTGGACAATCTGTCACCAAAGAACCTGTCTGCTTTGCGGGACCAGTACAAAGATCTTTGCCAATATTCTCCGGAGAGAAAAGACGACATTAAAGATTTGGATAAGCAATTATCTGACTGTTCCTTGGGTCTTGAACACTTCCTGCGTGAGTTGGGCCAGTTATATGAAGCTGCCTGCTCCCTCCCTGAAGACAGTCCTCAAAGGAAACAGATGGAGCATCTCCCTGGATTGTGTGCTCAGATGCTGTTGGATGGTTTCCCCATTGAGCTTGTGGATGGAGATGCATCATATATCCCTCTGAAATGGATATCAGCTGTTCTGACTGAGCTTCATAATCTTGTGGGCTCTAACAGCAAGATCCTGGTTGTCTCAGTTTTAGGGGTCCAAAGCACTGGGAAGTCCACTCTCCTCAACACCATGTTTGGGGTCCAGTTTGCTGTCAGCAGTGGAAGATGCACCAGAGGGGCCTTCATGCTACTGATTAAAGTCAACAAAGAACTCAAGGAGGAGCTGAAATGTGACTTCATCATGATCATTGACACAGAGGGGTTGAAATCACCAGAGTTGGCTCAACTAGATGATAGCTATGAACATGACAATGAACTGGCCACACTGGTGATAGGACTCAGTGATGTCACTATCATCAACATCTCCATGGAGAACTCCACAGAGATGAAAGACATTCTGCAGATTGTTGTTCATACCTTCCTCAGGATGAAGGAATTGGGGAAGAAGCCGATATGTCATTTTGTGCACCAGAATGTGTCAGACATGTCTGCTCATGACAACAACATGAGAGAGCGGAAGAAGTTGTTGGAACAGTTGAATGAAATGACCCAGGCAGCAGCCAGAATGGAGAAGAAGGAGAATATCACCAAGTTCACTGATGTGATGGATTACGATCCAGACACAAGCAGCTGCTACATCCCAGGACTCTGGCATGGGACTCCCCCGATGGCTCCAGTCAATGTTGGCTACAGTGAGGCTGTATATGACTTCAAAAAGAGCTTGATGCAAGACTTAATCAAATGCCAGAGTAATGATGACATGACACATTTCCTGAAGTGGACACAAAGCTTGTGGGAGTCTGTCAAATTGAATAAATGAATTGTAAGTGTCAGAAACAGCTTGGTTGCAGATGCATACACCAGTTAATGCTTTAAGTACAATGGTTGGAAACGGTTCTTCAATAAGGACATTTATTCCTGGATAATGGGTGCTGAAAGCAGAATATAAAACAGATCCAAACCCCCAAATGAGCATATGAATCGTGCTGAAGGACTTGTCCTGTCATCCCAATGGTGGAAGCAGTTTATTACCGTCACTAGGACAGCAGAATCCCTGCCCATCATGTTCTAAGTGTTCTAAGTTAccagttagaatagtagaatacacaaggtgcaatttagaaATGTGGTTTTATATCAGCAGGTTTTCTCTTGTTATGCAAGTCACTGACAGTCAGTCatttagcccatgtcagcaaaacaaagatTGCTAAGTTAGTTTAGCGGCCAGCTATTCT
>TU1817943
TCTTATTTACAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGTCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGTCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGCCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGCCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACCAGTCCTCTTCAGGATTCTGAGGCCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGATTGATATGGGACCAGACAAGTCCTCTTCAGGATTGTGAGACCTCCTCTCTGAGAGTTATAATGAGTTATCATCAGGGGGCTGAGGGTGAAGCCATCCCTAAAAAAAGACGTAAAGTTGGGTCACCAAACAAGGATCTTGTTGAGACCATGGACCCTGATATGAAGAGGTCTTGTACTACTAGGGGCCCTCCAGAGAGCGCAGAGTCTATTTCCTCTGGTTTTCTATCAATGACGACTGACAAATCCATGGATTTCCCTCTTAATTTCAAAGGAGCAGACTCTCTACAAAACAAAGGG

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954147.1 False 4645 mRNA 0.45 9 8713686 8741009
TU1817943 True 690 lncRNA 0.44 2 8715297 8723083

Neighbor

gene id symbol gene type direction distance location
LOC110497213 LOC106610529 coding upstream 5999 8670919 ~ 8707687 (+)
LOC118941439 NA coding upstream 70065 8640309 ~ 8643621 (+)
LOC110497214 LOC106610534 coding upstream 73462 8627294 ~ 8640224 (+)
LOC110498609 LOC106610517 coding upstream 86840 8611926 ~ 8626846 (+)
LOC110534718 NA coding upstream 104342 8608164 ~ 8609344 (+)
LOC118941440 LOC106577279 coding downstream 42858 8778760 ~ 8802053 (+)
LOC118941441 NA coding downstream 79133 8820142 ~ 8824446 (+)
vwa11 LOC106610525 coding downstream 134100 8875109 ~ 8904658 (+)
LOC110518381 LOC106610525 coding downstream 168451 8909460 ~ 8953635 (+)
LOC110497233 LOC106602251 coding downstream 219590 8960599 ~ 8981315 (+)
G1587720 NA non-coding upstream 47327 8665669 ~ 8666359 (+)
G1587712 LOC106610491 non-coding upstream 59037 8654182 ~ 8654649 (+)
G1587711 LOC106610491 non-coding upstream 59580 8653515 ~ 8654106 (+)
G1587710 LOC106610491 non-coding upstream 60673 8652646 ~ 8653013 (+)
G1587751 NA non-coding downstream 65477 8806486 ~ 8807944 (+)
G1587799 NA non-coding downstream 181251 8922260 ~ 8937642 (+)
G1587824 NA non-coding downstream 216093 8957102 ~ 8957976 (+)
G1587831 NA non-coding downstream 230428 8971437 ~ 8973548 (+)
G1586672 NA other upstream 1657217 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2351374 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2542859 6169580 ~ 6170827 (+)
G1585804 NA other upstream 2900833 5808978 ~ 5812853 (+)
G1585483 NA other upstream 2998311 5643756 ~ 5715375 (+)
G1587790 LOC106610525 other downstream 159977 8900986 ~ 8947363 (+)
G1587805 LOC106602251 other downstream 252445 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 601850 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 682756 9422781 ~ 9425478 (+)
G1588532 LOC106610266 other downstream 1070039 9798537 ~ 9814485 (+)
G1587738 NA non-coding downstream 1780 8724863 ~ 8725236 (+)
G1587741 NA non-coding downstream 11758 8734841 ~ 8735293 (+)
G1587727 LOC106598223 other downstream 16461 8739544 ~ 8844780 (+)

Expression


Co-expression Network