LOC118941444 (LOC106610501)


Basic Information

Item Value
gene id LOC118941444
gene name LOC106610501
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8958065 ~ 8960469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037652.1
TGAGATTTGATCTCAAAACAATTTTCTGTTCCCCAAACTATTtaatgttatgaacagagtaCCATGTGcgaaagttttttttaaatcacgttGTTTACAAGGAACGTCAAGGCGAGGAGGGGGAAGtaacggaaatatgcagataaatgctagaacgcgccaataggatcttgCTAGTTCGTGATAGGCTCTAACCACCTCTTtccttgttctgcccactatgactaatttgttcccattggaaacaaCAGGCTGTGTCTATCTTGGTCTAGTTATAACAAATCTTTGCTAAAGTCATTCCCAAAAAACAATAGCACTTCCGGAAACAAACCTACGGATCTGGCAGTGGGACAATCTACACTACGCTCCTCTCTGGAGAGATGTCTTTATTTGAACAAAACCTTTGCATGTTCTCACGTTGACTGTAAAAAAGGTTGAAAATATAATCCGGCTATTTTtataaaatggtgtaaaatatttACAGGAAATCTACACACCACTCAGTGCGTCACACAAAGCACTGTGTGCCGTGTCCATAGAAGAAGAAGCCATGTTCTGATCAATCTTGTAAGTTATATTCGAAATAATAATCGATTGTAAATGTATATGAGTGTTGGTTGAAGATGTCTGCCACCCACATGTCGAACGAAGGGTTTCAAATTCAGTTCGCCTCTGTTATGGAGAGTGTATTGAATACTGCAGTCACCGAGACAATTAAACTTTTCGAAACAACTATTGAGGAACTGCGAGCCGAAATATCCAGAATAAAAAAGGAGAACAAGGACCTCAAATCGAGGCGTCGATCCCATGAAATAACGAAGAGATGGACCGGTGAAAGTGAACGCCAAAACCACAGAGCCCAGACCAAGTCAAAGTGCAACACGTATCGGAAAATGTGACATCGGCGTTCAATGCGTTCTGACAAAGCAGGCTTTACCTCGGGCTGGGGAGCAGCACCTGCGGGAGGAGGACCAGGGGACTGTAGACTATTCTGATGACTACTCCCCTGGGTACATACTGCTGAAGAAGGAGGGGGGCAGGCCCCCGACTCTGGTCCGCAGACAACCTCTCAGAGAGTTACCAGGCAGAGCCCTGGTTCCTCCTGGAGCCGTCTGGGCCCTGATCAACCGTTACACCCAGGAAAGGCCTCCCACCACCCAGTCTACCTCAGGAGCCGCAGCGGCCGTCTTCCAGGGAGATCCAGACACCCAGGAGGCCCCCCAGGCAATAATCTGAAGAGGCACAAACTGGTCCACAATGGGGAGAAACCCTACACCTGCTCTGAGTGTGGCAAGCACTTCAAACAGACTGGCCATCTGAAGAAACACCTGAAGACAATACACAAAGACAGATAGAGAGGCCAGGGGACGAGCctttaatggcaccctattccctatatagtgcactatgcaggctctggtcaaaagtagtgcactatatacgaaTAGGGTGTATAGAAGGGAATAATAGACATTCTCCATTTGTCAGTTCAAAACACAGCCATATAGGTTttaatgggatattgtgtgtagtttggtgagaaaaaaaatacatttcattcaATCTTGAATTCTCACAGTGATTAATGACGCAGGGATCTCAATCTATTCTCACAGTGACCGGGAAGGACTTGttattttatgtttttctgtACAGATTGATTACAAAAGTCAACGCTTTGGTTGCGTAAACATTTGGGGCTACTTTTGTTGTTTGAAAGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106610501 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037652.1 True 1721 mRNA 0.44 3 8958065 8960469

Neighbor

gene id symbol gene type direction distance location
LOC118941442 LOC106610527 coding downstream 83693 8848001 ~ 8874372 (-)
LOC110497222 LOC106610496 coding downstream 148446 8805462 ~ 8809619 (-)
LOC118936568 LOC106610491 coding downstream 302583 8645589 ~ 8655482 (-)
LOC110497211 LOC106610489 coding downstream 358591 8538027 ~ 8599474 (-)
LOC110497208 LOC106610467 coding downstream 433751 8521512 ~ 8524314 (-)
LOC118941443 NA coding upstream 5056 8965525 ~ 8971363 (-)
LOC110497226 LOC106610522 coding upstream 34739 8995208 ~ 9004935 (-)
LOC110497236 LOC106610374 coding upstream 77823 9038292 ~ 9042976 (-)
LOC110497232 LOC106610547 coding upstream 88070 9048539 ~ 9052165 (-)
LOC118941445 NA coding upstream 110360 9070829 ~ 9077713 (-)
G1588029 NA non-coding downstream 18413 8916151 ~ 8939652 (-)
G1588004 NA non-coding downstream 26777 8854241 ~ 8931288 (-)
G1588022 NA non-coding downstream 61502 8895858 ~ 8896563 (-)
G1587991 NA non-coding downstream 123065 8833965 ~ 8835000 (-)
G1587990 NA non-coding downstream 124391 8832049 ~ 8833674 (-)
G1588056 NA non-coding upstream 11001 8971470 ~ 8973876 (-)
G1588071 NA non-coding upstream 56588 9017057 ~ 9018392 (-)
G1588041 NA non-coding upstream 73685 9034154 ~ 9035467 (-)
G1588044 NA non-coding upstream 77071 9037540 ~ 9038194 (-)
G1588003 LOC106610497 other downstream 4389 8902855 ~ 8953676 (-)
G1587567 NA other downstream 623187 8243558 ~ 8334878 (-)
G1587522 LOC106598223 other downstream 733032 8146257 ~ 8225033 (-)
LOC110500908 LOC106592107 other downstream 1064786 7886301 ~ 7908783 (-)
G1587221 NA other downstream 1184631 7773043 ~ 7773434 (-)
LOC110498432 NA other upstream 1176391 10134147 ~ 10145900 (-)
LOC110497368 LOC106610221 other upstream 2163919 11115879 ~ 11212126 (-)
G1590098 LOC106577701 other upstream 2310047 11270516 ~ 11270818 (-)
G1590583 NA other upstream 2680938 11641407 ~ 11641866 (-)

Expression


Co-expression Network