LOC110497233 (LOC106602251)


Basic Information

Item Value
gene id LOC110497233
gene name LOC106602251
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8960599 ~ 8981315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954163.1
atgtctgtctcattgttctatctgtgattTTAGTGTTGGCTCTGTAACTATCAAACGCTAGTTACCTAACTGCCATAAGCTTGCGGTCTTTCAATGCCTATGGTATTTATTTGTTCGAATATCCTCATACAGTAAATGCTACATCTTATATCTAGAAAGTATTAAATTGTTATTAGGACCGTCATTGAAAGAGACAACATCCAACAGTAGCTAGCCTGctaacggtagctagctagcttcctaGCCTTTTGCTGAGTTGGATCGTAACACTGACCCACTTGAACAAAAGTACCTACATGTTACGAACTcttaactgtagctagctacacatagACAGTTTGCTATGATGTCTGAAGCCATCATAACCTTCCAGTCTCAGCTCTCCGGAGTCATGGAGACTGTATTCAAGGCTGCTATGTACGAGATCACCAGGCTGGTGGACGATAGCTTCCTGAAGGAGATGTCCCGCAGCCGGGAGCAGGTCGAGTCACTGAAGAAGCGGCTGCAGTGGTCAGAGAACAGACGCAGGGATAGGGACAAAGAGCGAGACCGGAGGGGGAAGTGTGCGGACTGTGGGAGAGCTGACGAGGAAGCCGAGGAGAGAAGCTCTGGAACCTCACAGACAGGTGTGGAGAGGGGGTGTGGCCTGAAGCAGGAGAAGGTACCAGGGGAGGAGTGGAGCAGCTGTGGGGGCGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAAGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGCCTCTCCACAACACTGAGCTACAGGAGAGATGGGGCGTCTGCCTGGATGGGGCCGATGGTTCAGACGTCTCGGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACAGCGGTGCCAGGATGACTGGGGGTCCGCTCTAGACCAGGGGCCTGAACCACCGGGCCCCGAGGGAGACCCAGGAGACCCCAGCCAACCTCTCTACCGCCCCCGCTACAGCATGGAGGAACTGGGGGTCGGCTTTGAGAAGTCTGGTTACGGCAGTAGTGGTAGTGGCAACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCCCAGTCTCGTCTGGGGGGGCTGAGCTACAGAGCTGCAGGTCACTACCAGGTGGACCTGGGGGGGTCTGAGGGGGGAGACCATCACCATCGCTCCCACATGCCTCGCTCCCATCGGAGCCGGAGGGAGCAGGTGGGGTCGCCAATGCCATCCCCCCACGCGGAGGTGGGAGACCTGAACTGCCTGTTGATCAACGAGGAGGGGTACCTGCAGGACTCCAGCGTCTTGTACCCTGAACACGGTGTCCCAGAGTCAGGTAGTAGAGCCGGCCACAGGGGGCTAACCTCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccTGTATGGCGCTGCTGACGACTTTGGACTCTCTTTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggtgtcATGCCTGCAATCAGTGCAGCATGACCTTCCCAGACTCTGGTTCTCTCAAGGTCCACAAGCAGAAACACAAAACGGGGAGAGGGTCGAGTACAGGGTCAGGGTCTGTGCCTCTGTACTCCTGCACCCAGTGCGGTAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGAGTCCACCAGGCCAAGGGACTCCACCTCTGCAGCCACTGCGGCAAGGGCTTCACCTCCTTCTCCGACCTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTGAAGGTGCATCAGCGCATTCACACGCAGGAGAAACCCCACTGCTGCAATATGTGTGACAAGAGCTTCACGCGGGCAGACATTTTGAAAGTGCACCTGCGCACCCACACTGGGGAGAGACCGTACTGCTGTTCTGTGTGTGGACTCAGCTTCAAACGACTGGCACATCTGAAGTCACACCAGCGCAAACACAGGCCAAATCTCCTGGACTGATTtttttattgatacatttttttttatatagcagACACTTACAATTGCTACATTAATCTTCGGACtagttttattattttatttgacattGAGAACATTTCTTGTGATCCGTTCTTTATTAATAAGGACATTGAAAATATGAACATGTTTGCTGTGATCTAGTGTACAATAAATTAGGCGGCTCTGCTATTCTTACAACTTTGCCCAGTCAAAAAGACGGAACTACTTTTCTATGAGTTCTGATCCTTCTAACCTTGATTTTCATTTTTAtaacatatacagtatttcactTTTTAACATGTATAGTTTTTACTAGGTGTTGTCCAATTAATGCTGTAACCCTCTTCAAATCAGGTTTGATTGGAAAATGCTGTTCAAATGAGGACATGCATTATCAAATCTTTGTACTCCCTGACttaaggccatgcagccgaaacgcgtcTTGAGTTTAATCTTTGTTTTCATTTAACATGGCGTACAAATGAAGGCATTTTAATGAATTA
>TU1818069
AGAAGGTACCAGGGGAGGAGTGGAGCAGCTGTGGGGGCGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAAGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGCCTCTCCACAACACTGAGCTACAGGAGAGATGGGGCGTCTGCCTGGATGGGGCCGATGGTTCAGACGTCTCGGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACAGCGGTGCCAGGATGACTGGGGGTCCGCTCTAGACCAGGGGCCTGAAC

Function

NR:

description
zinc finger protein 628-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954163.1 False 2586 mRNA 0.51 4 8960599 8981315
TU1818069 True 309 lncRNA 0.59 3 8978795 8979694

Neighbor

gene id symbol gene type direction distance location
LOC110518381 LOC106610525 coding upstream 6964 8909460 ~ 8953635 (+)
vwa11 LOC106610525 coding upstream 55941 8875109 ~ 8904658 (+)
LOC118941441 NA coding upstream 136153 8820142 ~ 8824446 (+)
LOC118941440 LOC106577279 coding upstream 159342 8778760 ~ 8802053 (+)
LOC118941438 LOC106610528 coding upstream 219590 8713686 ~ 8741009 (+)
LOC110497235 LOC106610498 coding downstream 3024 8984339 ~ 8994686 (+)
LOC118936441 LOC106610520 coding downstream 28463 9009778 ~ 9015559 (+)
LOC110497247 LOC106610465 coding downstream 46330 9027645 ~ 9033977 (+)
LOC110498615 LOC106602251 coding downstream 71624 9052939 ~ 9064376 (+)
LOC110497243 LOC106610480 coding downstream 84999 9066314 ~ 9068577 (+)
G1587824 NA non-coding upstream 2623 8957102 ~ 8957976 (+)
G1587799 NA non-coding upstream 22957 8922260 ~ 8937642 (+)
G1587751 NA non-coding upstream 152655 8806486 ~ 8807944 (+)
G1587741 NA non-coding upstream 225306 8734841 ~ 8735293 (+)
G1587814 NA non-coding downstream 54308 9035623 ~ 9037395 (+)
G1587807 NA non-coding downstream 93792 9075107 ~ 9084300 (+)
G1587868 LOC100136185 non-coding downstream 106353 9087668 ~ 9090046 (+)
G1587882 NA non-coding downstream 129291 9110606 ~ 9110847 (+)
G1587883 NA non-coding downstream 132917 9114232 ~ 9114459 (+)
G1587790 LOC106610525 other upstream 13236 8900986 ~ 8947363 (+)
G1587727 LOC106598223 other upstream 115819 8739544 ~ 8844780 (+)
G1586672 NA other upstream 1904130 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2598287 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2789772 6169580 ~ 6170827 (+)
G1587805 LOC106602251 other downstream 12139 8993454 ~ 9063965 (+)
G1588177 LOC106610450 other downstream 361544 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 442450 9422781 ~ 9425478 (+)
G1588532 LOC106610266 other downstream 829733 9798537 ~ 9814485 (+)
LOC110534552 LOC106602324 other downstream 848141 9829419 ~ 9847684 (+)
G1587831 NA non-coding upstream 5247 8971437 ~ 8973548 (+)

Expression


Co-expression Network