LOC118941443


Basic Information

Item Value
gene id LOC118941443
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8965525 ~ 8971363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037651.1
ATAACACCCAAGGATGAAGAAGACATTACAAATAGTGGTAATTTATAGCAAATATGCAGTTATTATAATTTACTTTACCATTTTTCTTGTTTGGTCAATTTATTTTTGGTTTGAGGAAAATAAGAGTGTATATTTTTCCTGAGGAGGGACTGATATAAATTGACTAAAAATGATTTGAGAATGTTTAAGTATGTATCAAACTATGGAAGGAAATTAGAAGTAGTGACttatgtgttatgggttagaaaaACTGTAACTACATTGGGGGCTCATATGAAGGTTATGGTAACAAGGGGGGGGTGTTATTTCTAGAAACAGTGTATATTGATAGACAAGATAATTCACAGAAAAGGAAGGACAGTTGGTCTTGTAAAAATATAGGGACAATTCTAAAAGTAGATAGAACATTACACACACCTAGATTATGGTAAAAGTAATAAGTAGTGGCATTTTGAAGAAGCTTAGGACTTAGTTTTGTTAGGATTGGATATTCTTCCAACTAGAAAACACTTGACTGATTACATGCAATTCTTGCAGCAGTTACGGTAGGGACCATAATTTGGCTATCATTATGAATATTTTTGTGGGAGGAGGCCAGGTATTTAAGACAGaatgtttacatagggctgttatTTAAAAATTAAGATTTAGTGATCCTGCTATAAGAAGAAAGTCTGTTGTCAGGAAATAACccatgtgttagtgtgtatgtcctCAGGAAAAAACAGCACATAAGAGGCCAGATGGAAGGGCATAGACTGAATTCTGGAGACTGAGTGTACATCAAGATACATCGGGCTGGGGATATACTTCTTACAGCACCTGCAGTGGTAAAGATTGTCATGTCTCTCTTTGGTGGGTGCATAAGTCTCACAAGAAGTAAAGTCCAGCTGAATAATGGGTGAGCTTGAAAACACCATGACAGAGGACgtgaaacaaaacaaaagagagagactagattctactgtagacatactgggttgagtttgggggttatttgttttatttgataatGTATCATGTGAATAAGGATATATGTTAGGGTAGTTGTACTCTAAACCACATGTTGAAGGCTCAATGTGGAAGCCCATTCCGTGTTAAATTACTTTAAGAAGGAATAATGTTGATTAAGGTTATGCACATGTTTATCAGTTGAAACAGAGCAGATGGGGAACTAAGTAAAAAATGACATGGTTTGGGAACACCTCTCAGAACCTGCGGCCGAAAGGGGAAGACTGGATGAAAGCACGAGGAAGCCAATTAGGGCCTCCATTTTTGTGGAGTCCAGCAGAAAAGTATCCTGGAGGCATAgagtcagTCTTATGTTTAGGAAACCAGATGGAGAAGGGTTCTCCAGCTTCAGCTGGAATGTCAGTTTGTGTGATGAGTGATGGAAGTAAGAGAATGTATGGTGTAATCATAGAACAGAGGCCATAAGTCTCTAAGTATGAATGCCCCATAGAAAGAAGGCAGAAATCTGAACCAGGATGAGAGGTTCCACATCTGATGATCCAAGGGGACCAGAAGGATCTCTCCCAGTGATACCAGGAGATCGAGTCTACGTTTGAGTGTTCCGAAGGAAGTGGGATCAGCCGAGGAGGGAAGGACCCTACGAGGTGGCAACAGCCACAAACACGGCCGTCCAAGTGAAAGGAAGCAAGACGTGGTATCATCTAAACCACTGCACCCGAGTCCCGACGGAGAGAAGGACACAACCATACAGAGATGAGGACACAGAGGATGCTGATTCACCAGAAGGGACCCCGGAGGGAGCAGGAGCAGCGGAATCGATCAAAGCGCCGGGGAGGAATCAAGAAAATGGCAGACCAGATACAACGAGTGCATCGGCTAACACACTCAGAAGAACCGACCAGGGAAAAAGAGCCTGAAAAGAAAAGAGACAAACAACCAAAGTTTCCTCCAGTATGGCCAGAAAGCCCAGAAGTGGGAGGGGGTAACATGTCTGCCACTCCTGATGATATACTTGTTGGGGCAGGCTTTGTTGACGGAAGCCTTCTACAGTGGGACCCCGAGGTATCGCCTAAAGAAGGGGAACATCTCTTCCCTGAAATGGACGCCTTCCCAGATGGAAGCCCAGTTCGGGCTGAGGAGGGAACAACATGcgaagagagtggaggagaagccTTATCAGGAACAACAAGTGAAGAAAGCAGAGGAGAAGCCTTACCAAGAGCAGAAGGAGAAATCTTGCAAGATGAAAGAAATGGGGATTTCCCCAAAATTGACTTTTCAGCTCTTGAATTGTCTCCATAATGAACAATTGAAGTTAGACCCATAGAAGAACAATGATATTGACATAACAGAAGTAACAGTGAACGCTAGAATAGCAACAACAGACTCACGCACAATCAAGATGTAGGGTggaaacaggaagagaagagaggaaccaGTCAAACAATCTAAAAAGACTGACAAGGTTAGAATCTCTGTCCCACCTCAACATATAACTGAAACAGAAGAATAGAAGACAAAAGGATCAAACCCTTACCGGAGATTGCATTCGGTGGATGGACATATCATCGAACGAAGAGAGAAGTCATTTGGGACTCAAAAGGATGTGACCTGACGTTAACCAAAGAAGTAGACGAGTGGGTGCTCACCATGAATCAGATTGAACCAGTTGAAGGTGAAGAATTAATAGGTGAAATAATGAGAACAAGATTGGCTGAAGGGAGTAGTTCCTCAGTCATTCAGAATTGGTCTTACGCCAATACCTAAACAGGAAGAGCCTGCGGTAGCTAGAAAGCATCAGAACCAGGAGggttctttactgacattttgaaCTTTTTGACTAACTTTAATGACCTACCTCAAGATAAGAACATTGCaaagatgacagacagacataccagACTCTGAACCACTCAAGGACACCACATGAAAAGAATAGTGAAGAATGAGTGGTACGAATGGGCTAAGTATACAGCAGAAATAAACATAGAATGGACAATTGTATTTTGTGTAGAAAATCACCTTTGTCTGATCTTTTGATAGTACCTGAACCTGCATCATTTGAAGAATGtgttaaatgtaaaatgttcaatATTCAGAGAAAATACTACATTCCCTTGTGTGACATAGAATGTAGGATTGCTCGAGGGAGCACTAGAGGCAGAACCATGTTAAACGAGACTGGATTAGGAGACAAGGATTGTGCTGCCTATGACATTAAAACTGAATTAAATGGACCTCAATTAGACAGAAGTACTGTGGTTAAAGGTAAATATGAAGGTTTTTACAGCCATAACACCGAAGGAATTGGTGTAGGAAACACCACTGTAGAATGTGATACTATTTGGGTACTAGAGACTGCAGGGGTTCGTAGGAATAAAGATAAAGGGTTGGTGACGAATAGAAAAGGGTTGTGTGGTAAAATAACTCAGGTTGCGCCATCTCTTATTATGCTAAAAAATCAGGACAGAAGTATTGCGGATAGTTTCTGGATGTGTGGGAATGACAAACTGTTGAATGTACTGTACTGCCAGATGGATGGACGGGTCTTTGTACCTTAGTTAGAGCAATTCAACAGGTAGTCATCATGGGGTGATTTAATAATGGTTATGTTAACTCTAGAGTTAAGAGGGCGTATGAGAAAGACACTGAGGTATACTTTGATGCAATTGGACAGCCTAGAGGGGTACCTCGGGAGTTCAAGGCAAGAGATGAAGTTAGATCTGGATTTGAATCTATATTTTTGTGGATAACACCAAATAAGAATTTAGAGTGGATTAATTACATATACTATAACCAACAGAGATTCATTAACTATATTGACTCGGCTTTAACGGCGTTGGGGGAACAGGTACAGGATACCAGTAAAATGTCTTGCCAAAATAGACAGGCTCTCAATTGGCTTTTTGCAGAGAAGGGTGGAGTTTGTTATGTTCGGGGATGATTGTTGCACCTTTATTCCCAATAACACTGCGCCTAATGGATTCTTTGCTGTCGCTATGGCTAAACTTAAAGGGTTAAGAAAAGAGGTTAAGAAAAATGCTGGGGTGGACTCTCATGTTTGGGATTGGTTGGACTTAGCATTGGGGAAATAGGGAGCCATGTTTGCTAGGACGGCCTTTATGCTGGAAGGGGGGTTATTGGCTCTGGGTATTGTATTTTGTTGTGTTTTACCCTGGGTGAAATCACTTGTGATCCAGACAACGGTTAAACAGATGTTTGTAAGTAGAGCTGACACTCCGGTGATAGTTGATCCTGTGCCGGGTAGGCCAGGCCACTATACTGATGAAAATGGACAGTTATGCTGTCATTCCAAATTCATAAGAAAGTCAACTGATGCATATCCACAAAAAGGGTCATTTCCGTAGTAAGTACAAGAGGTGTTATGTAAGGTCTACTTTTGCTCACGGCCTTGTGTTTTAGTATGTTTTGTCAAATGTTTTTATAGGTATATCAATGAATATATCTGGTTTCTTTTAATTAAAAGTTAGTTTTGCCTTCTAAAATGCTAGGTTATATTTAAAAACATGTAGGTAACAGTGGGATATCCCGGTTACAAGTGTCTACGGACCATGTCCTTAATCTTCTAACAGAGATTGGTATTGATGGTATCACGGTTGTTGGAGAGGTGTCTGAGAGGGAGAATCATGTGGAAAGCTTAAATTTAGAATGATGTGTCAATTTTATTTTGTAACTACATGGAGGCCTAGTGTTTTCTCATATTCAATTTATTATTTGACTCATtgctttattatatatatttttattttttgcgtAGCTGAGAACCTCAGACAAGGTTATGTATTTACATGCTCATGCTTTAACAAAagataatgtattattttttgtttctATACCGAACTAGATATTTTACTCTTATGAAATACTAGAGATGTTTGGTGTAGGTGATTAggaagttttatttttttattattttttatttttttatttaaaaatattttttttgataATCGACTGTTGATATTATGTTCCATATGTCCTTTTTAAGTTTTTGGTGCTTATTAAAGCACCAGAGGGGGGTTATGTGGGAGAAATTAGGTACATATATGGATAAATATATTGTCCTATATAAtggcatttgccattctggtaaggtacattgtctattgtataggacaggaagccagagtGGGGCCATGGGAGAGGGCAACACCTAGGGCAGCTGGACATACAAAGGTCAGAGGTTATCtaaggagggggtcagccaaagGACCAATTGATGGATTACAGACATCAATCACATCACAGGAGACAAGTCTGTTTGATCTTAGACAACCATATGAAGAGAAGGCGACCAGAACAGCTAGGCACCCTAAAGCTAAAGGAGATGAAAGACACCAAAAGGGACACATGGAGTTAATTACAGGGTATGAACACAGGCCACAGGAAAGGGGAATGTATAGTATTTTTAGTATAGCTGAGCATGCTAAAAAcagaagagacacatagtctgcTGACCCTAGATAACACACAAACAGGAGAACGCATTAAGCTGAGTGAAGGGTCAAAGCAAGGGTCTTGTCACCATTAGGATCTAATGGAAAGCAGATGGGGGCGTTATTGGGCTGAACAAGCAGGAAGCACGGATTGGGATGTAACTTAATTTGCATATGGGAGGGACTTATATGGTAGGTGTATAACTCAGAGCGAGggctctgaaaaagtgtgtgtgttccgcggaccgctCCGGCTTATGATACTGTTGTATTAAAAGTCTATATTGATTTTCACAAA
>TU1818380
TAACAGTGAACGCTAGAATAGCAACAACAGACTCACGCACAATCAAGATGTAGGGTggaaacaggaagagaagagaggaaccaGTCAAACAATCTAAAAAGACTGACAAGGTTAGAATCTCTGTCCCACCTCAACATATAACTGAAACAGAAGAATAGAAGACAAAAGGATCAAACCCTTACCGGAGATTGCATTCGGTGGATGGACATATCATCGAACGAAGAGAGAAGTCATTTGGGACTCAAAAGGATGTGACCTGACGTTAACCAAAGAAGTAGACGAGTGGGTGCTCACCATGAATCAGATTGAACCAGTTGAAGGTGAAGAATTAATAGGTGAAATAATGAGAACAAGATTGGCTGAAGGGAGTAGTTCCTCAGTCATTCAGAATTGGTCTTACGCCAATACCTAAACAGGAAGAGCCTGCGGTAGCTAGAAAGCATCAGAACCAGGAGggttctttactgacattttgaaCTTTTTGACTAACTTTAATGACCTACCTCAAGATAAGAACATTGCaaagatgacagacagacataccagACTCTGAACCACTCAAGGACACCACATGAAAAGAATAGTGAAGAATGAGTGGTACGAATGGGCTAAGTATACAGCAGAAATAAACATAGAATGGACAATTGTATTTTGTGTAGAAAATCACCTTTGTCTGATCTTTTGATAGTACCTGAACCTGCATCATTTGAAGAATGtgttaaatgtaaaatgttcaatATTCAGAGAAAATACTACATTCCCTTGTGTGACATAGAATGTAGGATTGCTCGAGGGAGCACTAGAGGCAGAACCATGTTAAACGAGACTGGATTAGGAGACAAGGATTGTGCTGCCTATGACATTAAAACTGAATTAAATGGACCTCAATTAGACAGAAGTATTGCGGATAGTTTCTGGATGTGTGGGAATGACAAACTGTTGAATGTACTGTACTGCCAGATGGATGGACGGGTCTTTGTACCTTAGTTAGAGCAATTCAACAGGTAGTCATCATGGGGTGATTTAATAATGGTTATGTTAACTCTAGAGTTAAGAGGGCGTATGAGAAAGACACTGAGGTATACTTTGATGCAATTGGACAGCCTAGAGGGGTACCTCGGGAGTTCAAGGCAAGAGATGAAGTTAGATCTGGATTTGAATCTATATTTTTGTGGATAACACCAAATAAGAATTTAGAGTGGATTAATTACATATACTATAACCAACAGAGATTCATTAACTATATTGACTCGGCTTTAACGGCGTTGGGGGAACAGGTACAGGATACCAGTAAAATGTCTTGCCAAAATAGACAGGCTCTCAATTGGCTTTTTGCAGAGAAGGGTGGAGTTTGTTATGTTCGGGGATGATTGTTGCACCTTTATTCCCAATAACACTGCGCCTAATGGATTCTTTGCTGTCGCTATGGCTAAACTTAAAGGGTTAAGAAAAGAGGTTAAGAAAAATGCTGGGGTGGACTCTCATGTTTGGGATTGGTTGGACTTAGCATTGGGGAAATAGGGAGCCATGTTTGCTAGGACGGCCTTTATGCTGGAAGGGGGGTTATTGGCTCTGGGTATTGTATTTTGTTGTGTTTTACCCTGGGTGAAATCACTTGTGATCCAGACAACGGTTAAACAGATGTTTGTAAGTAGAGCTGACACTCCGGTGATAGTTGATCCTGTGCCGGGTAGGCCAGGCCACTATACTGATGAAAATGGACAGTTATGCTGTCATTCCAAATTCATAAGAAAGTCAACTGATGCATATCCACAAAAAGGGTCATTTCCGTAGTAAGTACAAG
>TU1818382
CAGAAATAAACATAGAATGGACAATTGTATTTTGTGTAGAAAATCACCTTTGTCTGATCTTTTGATAGTACCTGAACCTGCATCATTTGAAGAATGtgttaaatgtaaaatgttcaatATTCAGAGAAAATACTACATTCCCTTGTGTGACATAGAATGTAGGATTGCTCGAGGGAGCACTAGAGGCAGAACCATGTTAAACGAGACTGGATTAGGAGACAAGGATTGTGCTGCCTATGACATTAAAACTGAATTAAATGGACCTCAATTAGACAGAAGTATTGCGGATAGTTTCTGGATGTGTGGGAATGACAAACTGTTGAATGTACTGTACTGCCAGATGGATGGACGGGTCTTTGTACCTTAGTTAGAGCAATTCAACAGGTAGTCATCATGGGGTGATTTAATAATGGTTATGTTAACTCTAGAGTTAAGAGGGCGTATGAGAAAGACACTGAGGTATACTTTGATGCAATTGGACAGCCTAGAGGGGTACCTCGGGAGTTCAAGGCAAGAGATGAAGTTAGATCTGGATTTGAATCTATATTTTTGTGGATAACACCAAATAAGAATTTAGAGTGGATTAATTACATATACTATAACCAACAGAGATTCATTAACTATATTGACTCGGCTTTAACGGCGTTGGGGGAACAGGTACAGGATACCAGTAAAATGTCTTGCCAAAATAGACAGGCTCTCAATTGGCTTTTTGCAGAGAAGGGTGGAGTTTGTTATGTTCGGGGATGATTGTTGCACCTTTATTCCCAATAACACTGCGCCTAATGGA

Function

NR:

description
uncharacterized protein LOC110494027 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037651.1 False 5727 mRNA 0.40 2 8965525 8971363
TU1818380 False 1804 lncRNA 0.41 2 8966902 8968924
TU1818382 True 790 TUCP 0.39 2 8967296 8968304

Neighbor

gene id symbol gene type direction distance location
LOC118941444 LOC106610501 coding downstream 5056 8958065 ~ 8960469 (-)
LOC118941442 LOC106610527 coding downstream 91153 8848001 ~ 8874372 (-)
LOC110497222 LOC106610496 coding downstream 155906 8805462 ~ 8809619 (-)
LOC118936568 LOC106610491 coding downstream 310043 8645589 ~ 8655482 (-)
LOC110497211 LOC106610489 coding downstream 366051 8538027 ~ 8599474 (-)
LOC110497226 LOC106610522 coding upstream 23845 8995208 ~ 9004935 (-)
LOC110497236 LOC106610374 coding upstream 66929 9038292 ~ 9042976 (-)
LOC110497232 LOC106610547 coding upstream 77176 9048539 ~ 9052165 (-)
LOC118941445 NA coding upstream 99466 9070829 ~ 9077713 (-)
LOC110497251 LOC100136185 coding upstream 106843 9078206 ~ 9095113 (-)
G1588029 NA non-coding downstream 25873 8916151 ~ 8939652 (-)
G1588004 NA non-coding downstream 34237 8854241 ~ 8931288 (-)
G1588022 NA non-coding downstream 68962 8895858 ~ 8896563 (-)
G1587991 NA non-coding downstream 130525 8833965 ~ 8835000 (-)
G1587990 NA non-coding downstream 131851 8832049 ~ 8833674 (-)
G1588056 NA non-coding upstream 107 8971470 ~ 8973876 (-)
G1588071 NA non-coding upstream 45694 9017057 ~ 9018392 (-)
G1588041 NA non-coding upstream 62791 9034154 ~ 9035467 (-)
G1588044 NA non-coding upstream 66177 9037540 ~ 9038194 (-)
G1588003 LOC106610497 other downstream 11849 8902855 ~ 8953676 (-)
G1587567 NA other downstream 630647 8243558 ~ 8334878 (-)
G1587522 LOC106598223 other downstream 740492 8146257 ~ 8225033 (-)
LOC110500908 LOC106592107 other downstream 1072246 7886301 ~ 7908783 (-)
G1587221 NA other downstream 1192091 7773043 ~ 7773434 (-)
LOC110498432 NA other upstream 1165497 10134147 ~ 10145900 (-)
LOC110497368 LOC106610221 other upstream 2153025 11115879 ~ 11212126 (-)
G1590098 LOC106577701 other upstream 2299153 11270516 ~ 11270818 (-)
G1590583 NA other upstream 2670044 11641407 ~ 11641866 (-)
LOC110497375 LOC106610178 other upstream 3106355 11933020 ~ 12261321 (-)

Expression


Co-expression Network