LOC110497235 (LOC106610498)


Basic Information

Item Value
gene id LOC110497235
gene name LOC106610498
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8984339 ~ 8994686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573241.2
accataaacgTTGCATCTGAAACAGCGGAGTGGATTCTGCACAAAATTTCTAACAGGATAACTGATATAACCTAACAGTCCAATTGGATAGAAACCTAGTTTTGGACACCCTATTCCTAGTCCACTccactttggaccagggcccgcATAGGGCTGAGTGGAGGGCGGGATAAATCGCTTCGGTGTAGATTTCCTGTAAATCATTTACACAATAAATAGCCTACAACGGCACTGATCAGTATTCGAATCGTATAATAATAGCCGAATTAAATTTCGAATCTTATTTACAGTAAACGTACAGATGTTTTGTTCAAAGAAAGGTCGTATTTTCTCTCATCGTTCCAATGTAGATTGTCCTACTACTCGATCCGTAGGTTTGTTTCCGGAAATTCTATTGTTTTTGTGTATGCTTTTTGCGTTGGCTCTaactagctaacaagctaactgccatctctcattatctctgttatttatatttattacaaTAGCCTCATGTACATTAACTGCTGCATCTTATCTCTCGAAATGATAAAAACGTATTACTAGGACAGTCACTGAGTCAGACAACAACTTCCAATAGTAGCTAGATTTGCTAGCCTGTTAACACAGACAGAAGGGTTTAGTTTCCAGTATATTTGCTGCAAACATTAGCTTCCTATCATTTTTTTTTGACTCGATTGCAGGACTGATTCGCCTGTACAAAAGTAACTAAACGTTACGAATTCGTAACTGTATCTAGTTACACATAGACAGTTTGCTATGATGTCCGAAGCCACCTTAACCTTCCAGTCTCAGCTCTCCGGAGTCATGGAGACGGTATTCAAGGCTGCTATGTACGAGATCACAAGGCTGGTGGACGATAGCTTCATGAAGGAAGTGTCCCGGAGCCGGGAGCAGGTCGAGTCGCTGAAGAAGCGGCTGCAGTGGTCGGAGAACAGACGCAGggatagggacagagagggaggccgTATCGGGAAGTGTGCGGACTGTGGAAGAGCTAACGACGAAGCCAAGGAGAGAAGCTCTGGAGCCTCACAGacagGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTACTAGGGGAGGAGTGGAGCAGCTGTGGGGGCGTGGCCGGGGAAACAGCCTCGCATGACCTGGAGGAGGCCGATGCCATCAGCCCTAGGAGAACCTCTGAGCCCGCAGACGTCGGAGGTCAAAAGCTGGACAGCCTGCTGAAAGAGGAAGCTCTCCACAACACTGAACTACAGGAGAGATGGGGCGTCTGCCTGGACGGGGCCGACGGTTCAGACGTCTCGGGGCCCAGTAAGAGTTTCAGTGAGCAGGAGCTGCAGCAGTGCCAGGATGACTGGGGGTCTGGTCTAGACCAGGATCCTGAACCATCGGGTCCCGAGGGAGACTCAGTGGACCCCACCGACCCTCTCTACCGCCCCCGCTACAGCATGGAGGACCTGGGGGTCAGCTTTGAAAAGTCTGGTTACGGCAGTAGTGGTAGTGGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGGGCTGAGCTACGGAGCTGCAGGTCACTACCAGGTGAACCTGGGAGGGTCTGAGGGGGGAGACCATCACCATCGCTCCCACACGCCTGGCCCCCATCGGAGCCAGAGGGAGCAGGTGGGGTCGCCAATGCCATCCCCCCACCCGGAGGTGGGAGACCTGAACTGCCTGTTGATCAACGAGGAGGGGTACCCTGAACACGGTGTTCCGGACTTGGGTAGTAGATCCGGCCACAGGGGGCTAACCTCCATCCACTCTGGGAGCTCAgcccacaacaacaacacagagagccTGTATGGTGCTGCTGACGACTTTGGACACTCTTTAAACCTCAGAGATCGTTCACAAGAGCAGGtaacaggaggagaggggaggcatcATGCCTGCAATCAATGTTCAATGATCTTCCCAGATTCTGGTTCCCTCAAGGCCCACAAGCAGAAACACAAAACTGGGAGATGGTCGAATTCAGGGCCAGGGACTCCATACTCCCGCACTCAGTGCGGTAAGACCTTCACCCAGGCCTGCAACATCAAGGTCCAAGCCGAGGGCCGCCACCTCTGCAGCCAGTGTGGCAAGGGCTTCACCTCCTTCTCTGACCTGAAGAGGCACACATGCAGCCAGACGGCAGACAAGCCCTACTGCTGCTCTCTCTGCGGGAACAAGTTCAGTCGGCTCTGGAACCTCAAGCTGCACCGACGCAttcacacacaggagaaaccccACCGCTGCACCATGTGTGACAAGAGCTTCACACGGGCGGACATTTTGAAAGTCCACAAGCGCACCCACACCGGGGAGAGACCGTACTGCTGCGCTGTATGTGGACTCCGCTTCAAACAACTGAACCATCTGAAGTCACACCAGCACAAACACAGGCCGGATCTCCTGAGCAGAGTGGTGGTCTAGAAAACTGTTTAATTTGACATTGAGAACAATTTTTGGGGTGATCAATTGCTTTTTAATAAGGACATTGAAAATATGAACTGTTGGAAATCTGTGTTAAATAAGAATGTATGCCTTAAATTATAGACTATGAATTGTCTGTCATAATGACCATGTCAACCTAACAAACATTTGAATATAGGGCATTCATGTGCTTATGGGATGGTGTAAGTCTGCCATGATTGTGTTCAAGTGCTTTTGATGTCAGACCAATAAAAAGCTTTGCTTACCATTGA

Function

NR:

description
zinc finger protein 8-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573241.2 True 2738 mRNA 0.50 4 8984339 8994686

Neighbor

gene id symbol gene type direction distance location
LOC110497233 LOC106602251 coding upstream 3024 8960599 ~ 8981315 (+)
LOC110518381 LOC106610525 coding upstream 30704 8909460 ~ 8953635 (+)
vwa11 LOC106610525 coding upstream 79681 8875109 ~ 8904658 (+)
LOC118941441 NA coding upstream 159893 8820142 ~ 8824446 (+)
LOC118941440 LOC106577279 coding upstream 183082 8778760 ~ 8802053 (+)
LOC118936441 LOC106610520 coding downstream 15092 9009778 ~ 9015559 (+)
LOC110497247 LOC106610465 coding downstream 32959 9027645 ~ 9033977 (+)
LOC110498615 LOC106602251 coding downstream 58253 9052939 ~ 9064376 (+)
LOC110497243 LOC106610480 coding downstream 71628 9066314 ~ 9068577 (+)
LOC118941446 NA coding downstream 167123 9161809 ~ 9173405 (+)
G1587831 NA non-coding upstream 10791 8971437 ~ 8973548 (+)
G1587824 NA non-coding upstream 26363 8957102 ~ 8957976 (+)
G1587799 NA non-coding upstream 46697 8922260 ~ 8937642 (+)
G1587751 NA non-coding upstream 176395 8806486 ~ 8807944 (+)
G1587814 NA non-coding downstream 40937 9035623 ~ 9037395 (+)
G1587807 NA non-coding downstream 80421 9075107 ~ 9084300 (+)
G1587868 LOC100136185 non-coding downstream 92982 9087668 ~ 9090046 (+)
G1587882 NA non-coding downstream 115920 9110606 ~ 9110847 (+)
G1587883 NA non-coding downstream 119546 9114232 ~ 9114459 (+)
G1587790 LOC106610525 other upstream 36976 8900986 ~ 8947363 (+)
G1587727 LOC106598223 other upstream 139559 8739544 ~ 8844780 (+)
G1586672 NA other upstream 1927870 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2622027 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2813512 6169580 ~ 6170827 (+)
G1588177 LOC106610450 other downstream 348173 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 429079 9422781 ~ 9425478 (+)
G1588532 LOC106610266 other downstream 816362 9798537 ~ 9814485 (+)
LOC110534552 LOC106602324 other downstream 834770 9829419 ~ 9847684 (+)
G1588675 NA other downstream 1138205 10132891 ~ 10135488 (+)

Expression


Co-expression Network