LOC110497226 (LOC106610522)


Basic Information

Item Value
gene id LOC110497226
gene name LOC106610522
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8995208 ~ 9004935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954159.1
GATATGGACCTTCCATGAGTCGGCGTACGCGAACGTGGGTAGATTACCTAAAACAGCGGTCGGCCATCTTGCACTCAGTCTCCATTTAATATCATACCTCAGTGGTCCACAGTGGAAAGAGAAACCATGATGTCACGGACATAGGCCGCCGATTCTGATCAATCCTGTACATTACATTGGAAATAATAATCGAAAGTGTGGGGTGAAGCTGGTTGCCGCCAACATGTCGAAAGAATGTTTTCAAACCCAGTTCGCCTTTGTTATGGAGAGTGTATTGAATACTGCAGTCACCGAGACAACGAAACTTTTTGAAAAAACTATTGAGGAACTGCGAGCCGAAATATCTAGAATAAAAGAAGAGAACGAGGACCTCAAAACGAGGCTTCGATCACtcgaaaatgtgaagaaatcaaCGGGTGAAAGTGAACGACAAACCGCAGAGCCTGGACCGAGTCAAAGAACATCACGTATCGGCAAACGTGACATTGGCGTTCAATGCGTCCTGACAGCGCATGCTTTGCCTCGGGCTGGGGTGCAGCACCGGCGGGAGGAGAACCAGGGGACGGAGGTGCACCGGGGGGCCTACGACGAGGAGGGCAACCCACAGACTGCCTTAGTGCTGATCAAACAGGAGGTGGACTGGGAGGCAGACTATTCTGATGACTACTCCCCCGGGTACATACTGCTGAAGAAGGAGGGGGGAGATCTCCCGACTCTGGTCCGCAGACAACCTCTCAGAGAGTTACCAGGCAGAGccCTGGTCCCACCTGGAGCcgtcagggccctggtcaaccGTTACACCCAGGAAAGGCCTCCTACCACCCAGCCTACCTCAGCAGAGGCCCCCCTCCAGAGAGATCCAGACACCCAGGAGACCCCCCAGGctctcagcccatcccagccCAGGACCAGAGAAGTTACCAGTGCAGGCCAGGCCCCTGGAGCAGAACAGCAGTCACTTGTAATACCAACAGCAGAGTCTCCAACATTACACCAGACAGCATCTCCTCAATCAGCAGCCACTATCCAGTCTACAACAActgtcctgtctactgtaatgGCCCAGTCCACGGTAACTACTCTGTCAAAAGAAACTGTCCAAACGACCACAGCGGTCCAGTCGACTGTAGCGGTGAAGTCGACAGCAGCATCGTCAGAGCGCCCGCCACCTGTCATCTCCGGGTTACCCAGAACCCCTCTTCAGAATACACAGCCCAGCCCCGTACCCCCTCGTCCATCCCCATCTCCTCGACCATCACCAGCACAGTCCCACACAGACGTTCTACCTGTAGCTCATCCAATAGCAGTGCCCTCAACACAACCAGCTAGGCCTACAGCTGTACCTGATGGACCAACGGCCACACCACCAACACAGACACAACCGCCTACAGTTTTGGAGAAGTCGGGTCTTGCCACGGCAAGTCCGCCAACGCCTGTCCAGTCCGCTCCATCTCCTACTGAGTTGACAGAACCTGCCGGCCCTCCTGAGAAGCAGGTGTTGTTGGTCACTGAGCATGTGCAACACTCCTCCACCGTGCCCGGACCAAAGTCACCTTCTGTCCCAGAGACATCTTATGAAACCCCTCTACAGCTGTCAGCCCCTGCTGGAACTACACCCTCTGGCTGCTGTCAGATGTCTAAGACACAGTTTTTAGCTCAGTTGTCAGTAGTACCCCGAGTATGTGCTCCACCGAGGGTGGAGAAAGACAaggaggaggaaaaagaggggcAGGAAGATGAGGGGGAGAGGCTTTCCCCCCTCCCTGCCACATCTACGGAAGCTGTGATGACCAGGTCTGTTGCTACGGAGACGACCCCCGCCAGCGAGAATAAGGAGGAGATTGTTGTCCAGGTAGGCGGCAAGCAAAAGTCAAGTCAACGTGAAGCGCTCCTCTCCGGTCTCCGCCTCCGCTTAAGGCCCCGCCCCCAGGACAGCATGCCTTCTCCAGTGGTTGCTAAGAAacccagaggagagagaaccaccCCTCTAGACCACGACTACTCAAAGGTGATGGAGGACGGAGAAGAAAAGTCCAGGGAATCACACGTTGACCAGGATGTAGTAGAGGACACAGCTAATGGTGAGACGGCTGACGACAAGTCTAGTGGACAAGGAAGTAGTAACCACATCATcagtgaggaagagggaggagctAACACTGATGTGACCTCTCCGACCAGACAGTCACCTATTGTTGGAGGTGTGTCCAAATCCAAGAAGAGAAGCATGACCTGGGTGCAGGCTCAGAGACTATTGGCGCTAGCCCAGGCTAAGAGGAGTAGGTCAAAGGTCACCAAGGCCTCACAGAGAGGTCTGAGGTCAGAGCTAAGAGGCTTGGTCACACAGACACAGTTTCTGCCTTCCAACCCACAGCGCCGCCGGTCATACAGACCCAGCCCACAAGCTGCCTCCAGCCCACGCCGCACCAGCCCTCGCCAGGTTACAGGGGACAACACAAACCCTCCTCCTGCCACCCCTCCTAACCCACAGCCTCACTCCTTCAAGGTCACTTCCACCACCCCTCGTCGCGGAAGACCTCGTTCTGCGGCCGTGGCGACTTTAAATTTGAAACggtctccctccacccctcaaccTATCCCCTTCATTGTCACCGTCAGCCCTCGCTCTAACTTCAAAAAGTCCCCACGGACTTTCCAGCAGGCGCGCCGATACCGCCAATCACAACCGATGTGGTCACCACCGGGACCGTTACAGCTCCAACAGTCTCCCCAGGCTCCACGGAAACGTCTCGCCAAGAACCAGTGTGCAGACTGCGGTCGTGTCCTGAGCAGCGCCGCTGCTTTAGAGAGCCACGCCTCCCTCCACTCAGGGAAGCGCCCGTTCGCCTGCTCTGCCTGCGGTAAGGACTTCCCCGACCTCAAGGGCCTCAACCGCCACGCCCGCGTCCATGGTGATCAGCGGGGCCACCAGTGTCCGCAGTGCAGCAAGACCTTTGTCTACCGCTTCGGCCTGACTAAGCATGAGCAGGTGGTCCACAGCGGCGTGCGTCCGTTCGTCTGCCCAATCTGTGACAAACGCTTAATTACACAGCGTGACCTGGAGGCTCATATCCGcgttcacactggagagaaaccatttGCCTGCTCCCTCTGTGTGAAGCGGTTCAAGAGGCGTGTGGAGCTGAATGTTCACCTGATGTGGCATAACGGGGAGAAGAGACACTGGTGCTCGTACTGTGGGAAGGGATTTCTGGATTACAATAATCTGAAGAACCACAAACTGGTCCACACCGGAGAGAAACCCTACACCTGCTCCGAGTGTGGCAAGCGCTTCAAACAGACTGGCCATCTGAAGAAACACCTGAAGACGGTACACAAAGACCGATAGACGGCGGGGGAAAAATAttcaatgacaccctattccctatatagtgcacctctTTGGACCAGAAACAGTGGCAGGCCCTTGTAAGGTAGTGCACTTAGATAGGGTGTCATAGGAGCTATTGAGGGGGAATAGTTATCTCCGTTTGCTGTGAATTCAAAACCCAGCCGTGTTAGTGTTAATGAGGCAGGGATCCCAATCTATTCTGACAGTGACTGGGAAGGACTTATTATGTATTGATTCATTAAAAGTATCAAAGCTTTTGTTTTATAAACATTTGGTGCCGCTTTTGTTGTTTAGAAGAATCATGCTACGAGAGAACGATGTAGTTAagtgtaaaaaaatgtttttacaaatttgttttattttagttGACTGAGTTGGTTATTTGTATTTAAAACATGAATTCTGGTTATTTTGCTATAATTCGTTATTCATTAGAAAAGTTTGAAGCCTTAACAAGTTTAAATGTAGGTGTACTGTGTTCACGTCATGGTGTTTATGTTCTGTGGTTTTGAactacaatgaacaaaaataaacgtttcatgagctgaaataaaagaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954159.1 True 3911 mRNA 0.53 4 8995208 9004935

Neighbor

gene id symbol gene type direction distance location
LOC118941443 NA coding downstream 23845 8965525 ~ 8971363 (-)
LOC118941444 LOC106610501 coding downstream 34739 8958065 ~ 8960469 (-)
LOC118941442 LOC106610527 coding downstream 120836 8848001 ~ 8874372 (-)
LOC110497222 LOC106610496 coding downstream 185589 8805462 ~ 8809619 (-)
LOC118936568 LOC106610491 coding downstream 339726 8645589 ~ 8655482 (-)
LOC110497236 LOC106610374 coding upstream 33357 9038292 ~ 9042976 (-)
LOC110497232 LOC106610547 coding upstream 43604 9048539 ~ 9052165 (-)
LOC118941445 NA coding upstream 65894 9070829 ~ 9077713 (-)
LOC110497251 LOC100136185 coding upstream 73271 9078206 ~ 9095113 (-)
LOC110497245 LOC106602245 coding upstream 116828 9121763 ~ 9129364 (-)
G1588056 NA non-coding downstream 21332 8971470 ~ 8973876 (-)
G1588029 NA non-coding downstream 55556 8916151 ~ 8939652 (-)
G1588004 NA non-coding downstream 63920 8854241 ~ 8931288 (-)
G1588022 NA non-coding downstream 98645 8895858 ~ 8896563 (-)
G1588071 NA non-coding upstream 12122 9017057 ~ 9018392 (-)
G1588041 NA non-coding upstream 29219 9034154 ~ 9035467 (-)
G1588044 NA non-coding upstream 32605 9037540 ~ 9038194 (-)
G1588101 NA non-coding upstream 104790 9109725 ~ 9110203 (-)
G1588003 LOC106610497 other downstream 41532 8902855 ~ 8953676 (-)
G1587567 NA other downstream 660330 8243558 ~ 8334878 (-)
G1587522 LOC106598223 other downstream 770175 8146257 ~ 8225033 (-)
LOC110500908 LOC106592107 other downstream 1101929 7886301 ~ 7908783 (-)
LOC110498432 NA other upstream 1131925 10134147 ~ 10145900 (-)
LOC110497368 LOC106610221 other upstream 2119453 11115879 ~ 11212126 (-)
G1590098 LOC106577701 other upstream 2265581 11270516 ~ 11270818 (-)
G1590583 NA other upstream 2636472 11641407 ~ 11641866 (-)
LOC110497375 LOC106610178 other upstream 3072783 11933020 ~ 12261321 (-)

Expression


Co-expression Network