LOC118936441 (LOC106610520)


Basic Information

Item Value
gene id LOC118936441
gene name LOC106610520
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 9009778 ~ 9015559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954160.1
ACCCGTTGGTTTGTTTCCGGAAGTTCGACTGTTTTTAATGGATGCTTTTTGTGTTGCCTGTCTAGCTAAGTAGCATGCCAACTATCATAGCCTTACTTTCTCTCCATACATCTGGTATTTATATTTATTAGAATAGCCTCATATACAGTAAGTACTACAGCTTATATCTCAAAATGGTAAAACAATTGCAATAGGACAGTTATTGGGGGAGGCAAAAGCGGTTTAGTTACCAGTATATTTTCTGCTAAGGTTAGCTAATGAGCTAGCTTCATATCATTTTGATAGACTGAATCGTAACACTGACCAACCTGAACAAAAGTAGGTAATCTTTACGATCTcataactgtagctagctacacgtAGACAGTTTGCCATGATGTCTGAAGCCATCGTAACCTTCCAGTCTCAGCTCTCCGGGGTCATGGAGACGGTCCTAAAGTCAGCCATATACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAAGAGGTGTTCCGGAACCGGGAGCAGGTCGAGTCGCTGAAGAAGCGGCTGCAGTGGTCGGAGAACAGTCgcaaggagagggatagagagggaggccAGAGGGGGAAGTGTGCGGACTGTGGGAGAGCTGACGTGGAGACAAGCTCTGGAACCTCACAGACAGGTGTGGAGAGGGGGTGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGACCAGCTGTGGGGGCGTGGCCGGGGAAACAACCTTCCATGACCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAAAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGCCTCTCCACAACACTGAGCTACGGGAGAGATGGGAGTTCTGCTTGGACGGGGCCGACGGTTCGGACGTCTCGGGGCCCAGTAAGAGTTTCAGTGAGCAAGCACTGCAGCAGTGCCAGGCTGACTGGGGATCTGTTCTAGACCAGGGGCCTAAACCTCCGGGCCCCGAGGGAGACGCAGGGGATCCCACCGACCCGCTCTACCGCCCTCGTTACAGCATGAAAGAACTGGTGGGCGGCTTTGAAAAGTCTGGTTGCGACGGAAGTGGTGGTGGCGGCCATCTTGCAGACATAGAAGGGCTGGATAGGTTTCCTGGTTCTCCGTCTCGTCTGGGGGCGATGAGCTACGGAGCTCTGGGTCACTACCAGGTGGACCTGGGAGGGTCTGAGGGGGGAGACCATCACCATCGCTCCCACATGCCTGACCCCCATCAGAGCCAGAGGGAGCAGGTGGGGTCGCCAACGCCATCCCCCCACCCAGAGGTGGGAGAACGGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGCGTCTTGTACCCTGAACACGGTGTCCCAGAGTCAGGTAGTAGAGCCGGCCACAGGGGGCTAACCTCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccTGTATGATGCCGCTGACGACTTTGGACACTCTTTAAACCTCAGAGATCGTTCACAAGAGCAGGTAACAGgaagagtgagaggaggggggaggtgtcACGCCTGCAATCAATGCACCAAGACCTTCCCAGACTCCGTTTCTCTCAAGGCCCACAAGCAGAAACACGAAATGGGTAGAGGGTTGAGCACAGAGTCAGGGTCTGGACCTCAATACTCGCGCACCCAGTGCGGAAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGGGTCCACCAGGCAGAGGGACTTCACCTCTGCAGCCAATGCGGCAAGGGCTTCACCTCCTTCTCCGACCTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAATCGGCTCTGGAACCTCAAGCTGCATCAGCGCAttcacacacaggagaaacctcACCGCTGCACTATGTGTGACAAGCGCTTCACACGGGCAGACAATTTGAAGGTGCACCAGCGTATCCACACTGGGGAGAGACCGTACTGCTGCGCTGTATGTGGACTCCGCTTCAAACAACTGGACCATCTGAAGTCACACCAGCGCAAACACAGGCCGGATCTCCTGAAatgaatttgtttaaaaaaatatatacagtaccaatcaaaagtttggacatgcctactcattcaagggttttatttatttgtactattttctacattgtagaattatagtgaagacatcaaaactatga
>XM_036954161.1
ACCCGTTGGTTTGTTTCCGGAAGTTCGACTGTTTTTAATGGATGCTTTTTGTGTTGCCTGTCTAGCTAAGTAGCATGCCAACTATCATAGCCTTACTTTCTCTCCATACATCTGGTATTTATATTTATTAGAATAGCCTCATATACAGTAAGTACTACAGCTTATATCTCAAAATGGTAAAACAATTGCAATAGGACAGTTATTGGGGGAGGCAAAAGCGGTTTAGTTACCAGTATATTTTCTGCTAAGGTTAGCTAATGAGCTAGCTTCATATCATTTTGATAGACTGAATCGTAACACTGACCAACCTGAACAAAATCTCAGCTCTCCGGGGTCATGGAGACGGTCCTAAAGTCAGCCATATACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAAGAGGTGTTCCGGAACCGGGAGCAGGTCGAGTCGCTGAAGAAGCGGCTGCAGTGGTCGGAGAACAGTCgcaaggagagggatagagagggaggccAGAGGGGGAAGTGTGCGGACTGTGGGAGAGCTGACGTGGAGACAAGCTCTGGAACCTCACAGACAGGTGTGGAGAGGGGGTGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGACCAGCTGTGGGGGCGTGGCCGGGGAAACAACCTTCCATGACCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAAAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGCCTCTCCACAACACTGAGCTACGGGAGAGATGGGAGTTCTGCTTGGACGGGGCCGACGGTTCGGACGTCTCGGGGCCCAGTAAGAGTTTCAGTGAGCAAGCACTGCAGCAGTGCCAGGCTGACTGGGGATCTGTTCTAGACCAGGGGCCTAAACCTCCGGGCCCCGAGGGAGACGCAGGGGATCCCACCGACCCGCTCTACCGCCCTCGTTACAGCATGAAAGAACTGGTGGGCGGCTTTGAAAAGTCTGGTTGCGACGGAAGTGGTGGTGGCGGCCATCTTGCAGACATAGAAGGGCTGGATAGGTTTCCTGGTTCTCCGTCTCGTCTGGGGGCGATGAGCTACGGAGCTCTGGGTCACTACCAGGTGGACCTGGGAGGGTCTGAGGGGGGAGACCATCACCATCGCTCCCACATGCCTGACCCCCATCAGAGCCAGAGGGAGCAGGTGGGGTCGCCAACGCCATCCCCCCACCCAGAGGTGGGAGAACGGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGCGTCTTGTACCCTGAACACGGTGTCCCAGAGTCAGGTAGTAGAGCCGGCCACAGGGGGCTAACCTCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccTGTATGATGCCGCTGACGACTTTGGACACTCTTTAAACCTCAGAGATCGTTCACAAGAGCAGGTAACAGgaagagtgagaggaggggggaggtgtcACGCCTGCAATCAATGCACCAAGACCTTCCCAGACTCCGTTTCTCTCAAGGCCCACAAGCAGAAACACGAAATGGGTAGAGGGTTGAGCACAGAGTCAGGGTCTGGACCTCAATACTCGCGCACCCAGTGCGGAAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGGGTCCACCAGGCAGAGGGACTTCACCTCTGCAGCCAATGCGGCAAGGGCTTCACCTCCTTCTCCGACCTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAATCGGCTCTGGAACCTCAAGCTGCATCAGCGCAttcacacacaggagaaacctcACCGCTGCACTATGTGTGACAAGCGCTTCACACGGGCAGACAATTTGAAGGTGCACCAGCGTATCCACACTGGGGAGAGACCGTACTGCTGCGCTGTATGTGGACTCCGCTTCAAACAACTGGACCATCTGAAGTCACACCAGCGCAAACACAGGCCGGATCTCCTGAAatgaatttgtttaaaaaaatatatacagtaccaatcaaaagtttggacatgcctactcattcaagggttttatttatttgtactattttctacattgtagaattatagtgaagacatcaaaactatga
>XM_036954162.1
CGGAAGTTCGACTGTTTTTAATGGATGCTTTTTGTGTTGCCTGTCTAGCTAAGTAGCATGCCAACTATCATAGCCTTACTTTCTCTCCATACATCTGGTATTTATATTTATTAGAATAGCCTCATATACATCTCAGCTCTCCGGGGTCATGGAGACGGTCCTAAAGTCAGCCATATACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAAGAGGTGTTCCGGAACCGGGAGCAGGTCGAGTCGCTGAAGAAGCGGCTGCAGTGGTCGGAGAACAGTCgcaaggagagggatagagagggaggccAGAGGGGGAAGTGTGCGGACTGTGGGAGAGCTGACGTGGAGACAAGCTCTGGAACCTCACAGACAGGTGTGGAGAGGGGGTGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGACCAGCTGTGGGGGCGTGGCCGGGGAAACAACCTTCCATGACCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAAAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGCCTCTCCACAACACTGAGCTACGGGAGAGATGGGAGTTCTGCTTGGACGGGGCCGACGGTTCGGACGTCTCGGGGCCCAGTAAGAGTTTCAGTGAGCAAGCACTGCAGCAGTGCCAGGCTGACTGGGGATCTGTTCTAGACCAGGGGCCTAAACCTCCGGGCCCCGAGGGAGACGCAGGGGATCCCACCGACCCGCTCTACCGCCCTCGTTACAGCATGAAAGAACTGGTGGGCGGCTTTGAAAAGTCTGGTTGCGACGGAAGTGGTGGTGGCGGCCATCTTGCAGACATAGAAGGGCTGGATAGGTTTCCTGGTTCTCCGTCTCGTCTGGGGGCGATGAGCTACGGAGCTCTGGGTCACTACCAGGTGGACCTGGGAGGGTCTGAGGGGGGAGACCATCACCATCGCTCCCACATGCCTGACCCCCATCAGAGCCAGAGGGAGCAGGTGGGGTCGCCAACGCCATCCCCCCACCCAGAGGTGGGAGAACGGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGCGTCTTGTACCCTGAACACGGTGTCCCAGAGTCAGGTAGTAGAGCCGGCCACAGGGGGCTAACCTCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccTGTATGATGCCGCTGACGACTTTGGACACTCTTTAAACCTCAGAGATCGTTCACAAGAGCAGGTAACAGgaagagtgagaggaggggggaggtgtcACGCCTGCAATCAATGCACCAAGACCTTCCCAGACTCCGTTTCTCTCAAGGCCCACAAGCAGAAACACGAAATGGGTAGAGGGTTGAGCACAGAGTCAGGGTCTGGACCTCAATACTCGCGCACCCAGTGCGGAAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGGGTCCACCAGGCAGAGGGACTTCACCTCTGCAGCCAATGCGGCAAGGGCTTCACCTCCTTCTCCGACCTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAATCGGCTCTGGAACCTCAAGCTGCATCAGCGCAttcacacacaggagaaacctcACCGCTGCACTATGTGTGACAAGCGCTTCACACGGGCAGACAATTTGAAGGTGCACCAGCGTATCCACACTGGGGAGAGACCGTACTGCTGCGCTGTATGTGGACTCCGCTTCAAACAACTGGACCATCTGAAGTCACACCAGCGCAAACACAGGCCGGATCTCCTGAAatgaatttgtttaaaaaaatatatacagtaccaatcaaaagtttggacatgcctactcattcaagggttttatttatttgtactattttctacattgtagaattatagtgaagacatcaaaactatga

Function

NR:

description
zinc finger protein 180-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954160.1 False 2237 mRNA 0.53 4 9009778 9015559
XM_036954161.1 False 2152 mRNA 0.53 5 9009778 9015559
XM_036954162.1 True 1964 mRNA 0.55 5 9009795 9015559

Neighbor

gene id symbol gene type direction distance location
LOC110497235 LOC106610498 coding upstream 15092 8984339 ~ 8994686 (+)
LOC110497233 LOC106602251 coding upstream 28463 8960599 ~ 8981315 (+)
LOC110518381 LOC106610525 coding upstream 56143 8909460 ~ 8953635 (+)
vwa11 LOC106610525 coding upstream 105120 8875109 ~ 8904658 (+)
LOC118941441 NA coding upstream 185332 8820142 ~ 8824446 (+)
LOC110497247 LOC106610465 coding downstream 12086 9027645 ~ 9033977 (+)
LOC110498615 LOC106602251 coding downstream 37380 9052939 ~ 9064376 (+)
LOC110497243 LOC106610480 coding downstream 50755 9066314 ~ 9068577 (+)
LOC118941446 NA coding downstream 146250 9161809 ~ 9173405 (+)
LOC110534503 LOC106602246 coding downstream 206731 9125724 ~ 9291739 (+)
G1587831 NA non-coding upstream 36230 8971437 ~ 8973548 (+)
G1587824 NA non-coding upstream 51802 8957102 ~ 8957976 (+)
G1587799 NA non-coding upstream 72136 8922260 ~ 8937642 (+)
G1587751 NA non-coding upstream 201834 8806486 ~ 8807944 (+)
G1587814 NA non-coding downstream 20064 9035623 ~ 9037395 (+)
G1587807 NA non-coding downstream 59548 9075107 ~ 9084300 (+)
G1587868 LOC100136185 non-coding downstream 72109 9087668 ~ 9090046 (+)
G1587882 NA non-coding downstream 95047 9110606 ~ 9110847 (+)
G1587883 NA non-coding downstream 98673 9114232 ~ 9114459 (+)
G1587790 LOC106610525 other upstream 62415 8900986 ~ 8947363 (+)
G1587727 LOC106598223 other upstream 164998 8739544 ~ 8844780 (+)
G1586672 NA other upstream 1953309 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2647466 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2838951 6169580 ~ 6170827 (+)
G1588177 LOC106610450 other downstream 327300 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 408206 9422781 ~ 9425478 (+)
G1588532 LOC106610266 other downstream 795489 9798537 ~ 9814485 (+)
LOC110534552 LOC106602324 other downstream 813897 9829419 ~ 9847684 (+)
G1588675 NA other downstream 1117332 10132891 ~ 10135488 (+)

Expression


Co-expression Network