LOC110497236 (LOC106610374)


Basic Information

Item Value
gene id LOC110497236
gene name LOC106610374
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 9038292 ~ 9042976 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954165.1
TGAAGGTCGTCTTTTTAACTCGAATAAGGTAACGTTCCAACGTAGAATGTCCCACTACCCGACCCGTTAGTTTGTTTCCGgaattacattttttgggggtggaTGCTTATTGTGTTGACTGGCTAGCAAACTAGCTGCTCATAGACACTTTGCCATGATGTCCGCAGCCATCATAACCTTCCAGTCGCAGCTCTCCGGGGTCATGGAGACGGTCCTTAAGTCAGCCATGTACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAGGAGGTGTCCCGGAACCGGGAGCAGGTCGAGTCACTGAAGAAGCGGCTGCAGTGGtcggagaacagagagggagaccagagggGGAAGTGTGGGGACTGTGGGAGAGCTGGCAAGGAAGGTCATGAGATAAGATTAGGAACTTCACAGACAGGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGAGCAGCTGTGGGGGTGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGATCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGAGGCTGATGGTTCAGACGTCTCTGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACATCAGTGCCAAGATGAGTGGAGATCCAGTCTAGACCAGAGGCCTGAACCACCAGGCCCCGAGGGAGACTCAGGGGACCCCACCGACCCTCTTTACCGCCCCCACTACAGCATGGAGGAACTAGGGGGTGACTTTGATAAGTCTGGTTACTGCAGTGGCGGTAGTGGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGAGCTGAGCTACGGAGCTGTGGGTCACTACCAAGTGAACCTGGGGGGGTTTAAGGGGGGCGACCATCGCTCCCACATGCCTGGCCCCCATCGGATCCGGAGGGAGCAGGTGGAGTCGCCAACGCCATCTCCCCACCCGGAGGTGGGAGACCTGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGTGTCTTGTACCCTGAACACGGTGTCCCAGAGTCAGGTAACAGAGCCAGCCACCGAGCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccCGTATGATGCCGCTGACGATTTTGGACACTCTCTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggcgTCATGCCTGCAATCAATGTACCATGAGCTTCCCAGACGCTGGTTCCCTCAAGGACCACAAGCAGACACACAAAACGGGGAGAGGGTTGAGTTCAGGGTCTGGGCCTCCATACTCCTGCACCCAGTGCGGTAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGGGTCCACCAGGCAGAGGGACTCCACCTCTGCAGCCACTGCTCCAAGGGCTTCACCTCCTTCTCCGACTTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTCAAGCTGCATCAGCGCATTCACACGCAGGAGAAACCCCACCGCTGCACTATGTGTGACAAGAGCTTCACGCGGGTGGACATTTTGAAGGTACACCAGCGCACACACACTGGGGAGAGACCgtactgctgtgctgtgtgtgGACTCTGCTTCAAACGACTGGCCCATCTAAAGTTACACCAGCACAAACACAGGCCGGATTTCCTGGCCTGAGCGGTGGCCTAGAACAGTGATTTCAACTCTGTGAGGCATGGGTTCCGCCAAtttctttaaaatatatatatatatacttacagtccattcaaaagtttggacacacctactcattcaaggattcttctatatttttacaattttctacattgtagaataata
>XM_021573242.2
GCCGAGCCAACTACCATAGCCTTGCTTTCTCTCAATACCTCTGGTATTTGTATTTATGCGAATAGGCTcatatactgtaaatacataTACAGATTCTGGTCTTATATCtcgaaattatatattttttaaaaaatgcATTAGGTAGAGACCACAACATCCAACAGTAACGTTTGCTAGCATGCTAACACAGACAAAAGTGGTTTAGTTACCTGTATCTTTGCAGCTAATTTTAGCGATTTTTCCTTTTGATATACGGAATCGTAACACTGACCAACCTGAACAAAAGTAGCTAAAAGTTACTATCTCTTAACTGTAGCTAGCTGCTCATAGACACTTTGCCATGATGTCCGCAGCCATCATAACCTTCCAGTCGCAGCTCTCCGGGGTCATGGAGACGGTCCTTAAGTCAGCCATGTACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAGGAGGTGTCCCGGAACCGGGAGCAGGTCGAGTCACTGAAGAAGCGGCTGCAGTGGtcggagaacagagagggagaccagagggGGAAGTGTGGGGACTGTGGGAGAGCTGGCAAGGAAGGTCATGAGATAAGATTAGGAACTTCACAGACAGGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGAGCAGCTGTGGGGGTGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGATCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGAGGCTGATGGTTCAGACGTCTCTGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACATCAGTGCCAAGATGAGTGGAGATCCAGTCTAGACCAGAGGCCTGAACCACCAGGCCCCGAGGGAGACTCAGGGGACCCCACCGACCCTCTTTACCGCCCCCACTACAGCATGGAGGAACTAGGGGGTGACTTTGATAAGTCTGGTTACTGCAGTGGCGGTAGTGGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGAGCTGAGCTACGGAGCTGTGGGTCACTACCAAGTGAACCTGGGGGGGTTTAAGGGGGGCGACCATCGCTCCCACATGCCTGGCCCCCATCGGATCCGGAGGGAGCAGGTGGAGTCGCCAACGCCATCTCCCCACCCGGAGGTGGGAGACCTGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGTGTCTTGTACCCTGAACACGGTGTCCCAGAGTCAGGTAACAGAGCCAGCCACCGAGCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccCGTATGATGCCGCTGACGATTTTGGACACTCTCTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggcgTCATGCCTGCAATCAATGTACCATGAGCTTCCCAGACGCTGGTTCCCTCAAGGACCACAAGCAGACACACAAAACGGGGAGAGGGTTGAGTTCAGGGTCTGGGCCTCCATACTCCTGCACCCAGTGCGGTAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGGGTCCACCAGGCAGAGGGACTCCACCTCTGCAGCCACTGCTCCAAGGGCTTCACCTCCTTCTCCGACTTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTCAAGCTGCATCAGCGCATTCACACGCAGGAGAAACCCCACCGCTGCACTATGTGTGACAAGAGCTTCACGCGGGTGGACATTTTGAAGGTACACCAGCGCACACACACTGGGGAGAGACCgtactgctgtgctgtgtgtgGACTCTGCTTCAAACGACTGGCCCATCTAAAGTTACACCAGCACAAACACAGGCCGGATTTCCTGGCCTGAGCGGTGGCCTAGAACAGTGATTTCAACTCTGTGAGGCATGGGTTCCGCCAAtttctttaaaatatatatatatatacttacagtccattcaaaagtttggacacacctactcattcaaggattcttctatatttttacaattttctacattgtagaataat
>XM_021573243.2
GTTCCAACGTAGAATGTCCCACTACCCGACCCGTTAGTTTGTTTCCGgaattacattttttgggggtggaTGCTTATTGTGTTGACTGGCTAGCAAACCATCATAACCTTCCAGTCGCAGCTCTCCGGGGTCATGGAGACGGTCCTTAAGTCAGCCATGTACGAGATCACCAGGCTGGTGGAGGATAGTTTCCTGGAGGAGGTGTCCCGGAACCGGGAGCAGGTCGAGTCACTGAAGAAGCGGCTGCAGTGGtcggagaacagagagggagaccagagggGGAAGTGTGGGGACTGTGGGAGAGCTGGCAAGGAAGGTCATGAGATAAGATTAGGAACTTCACAGACAGGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTATCAGGGGAGGAGTGGAGCAGCTGTGGGGGTGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAGGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGATCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGAGGCTGATGGTTCAGACGTCTCTGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACATCAGTGCCAAGATGAGTGGAGATCCAGTCTAGACCAGAGGCCTGAACCACCAGGCCCCGAGGGAGACTCAGGGGACCCCACCGACCCTCTTTACCGCCCCCACTACAGCATGGAGGAACTAGGGGGTGACTTTGATAAGTCTGGTTACTGCAGTGGCGGTAGTGGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGAGCTGAGCTACGGAGCTGTGGGTCACTACCAAGTGAACCTGGGGGGGTTTAAGGGGGGCGACCATCGCTCCCACATGCCTGGCCCCCATCGGATCCGGAGGGAGCAGGTGGAGTCGCCAACGCCATCTCCCCACCCGGAGGTGGGAGACCTGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGTGTCTTGTACCCTGAACACGGTGTCCCAGAGTCAGGTAACAGAGCCAGCCACCGAGCCATCCACTCTGGAAGCTCAgcccacaacaacaacacagagagccCGTATGATGCCGCTGACGATTTTGGACACTCTCTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggcgTCATGCCTGCAATCAATGTACCATGAGCTTCCCAGACGCTGGTTCCCTCAAGGACCACAAGCAGACACACAAAACGGGGAGAGGGTTGAGTTCAGGGTCTGGGCCTCCATACTCCTGCACCCAGTGCGGTAAGACCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGGGTCCACCAGGCAGAGGGACTCCACCTCTGCAGCCACTGCTCCAAGGGCTTCACCTCCTTCTCCGACTTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTCAAGCTGCATCAGCGCATTCACACGCAGGAGAAACCCCACCGCTGCACTATGTGTGACAAGAGCTTCACGCGGGTGGACATTTTGAAGGTACACCAGCGCACACACACTGGGGAGAGACCgtactgctgtgctgtgtgtgGACTCTGCTTCAAACGACTGGCCCATCTAAAGTTACACCAGCACAAACACAGGCCGGATTTCCTGGCCTGAGCGGTGGCCTAGAACAGTGATTTCAACTCTGTGAGGCATGGGTTCCGCCAAtttctttaaaatatatatatatatacttacagtccattcaaaagtttggacacacctactcattcaaggattcttctatatttttacaattttctacattgtagaataat

Function

NR:

description
zinc finger protein 16-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954165.1 False 2017 mRNA 0.55 5 9038292 9042976
XM_021573242.2 False 2202 mRNA 0.52 4 9038293 9042840
XM_021573243.2 True 1946 mRNA 0.55 5 9038293 9042943

Neighbor

gene id symbol gene type direction distance location
LOC110497226 LOC106610522 coding downstream 33357 8995208 ~ 9004935 (-)
LOC118941443 NA coding downstream 66929 8965525 ~ 8971363 (-)
LOC118941444 LOC106610501 coding downstream 77823 8958065 ~ 8960469 (-)
LOC118941442 LOC106610527 coding downstream 163920 8848001 ~ 8874372 (-)
LOC110497222 LOC106610496 coding downstream 228673 8805462 ~ 8809619 (-)
LOC110497232 LOC106610547 coding upstream 5563 9048539 ~ 9052165 (-)
LOC118941445 NA coding upstream 27853 9070829 ~ 9077713 (-)
LOC110497251 LOC100136185 coding upstream 35230 9078206 ~ 9095113 (-)
LOC110497245 LOC106602245 coding upstream 78787 9121763 ~ 9129364 (-)
LOC118936446 NA coding upstream 91213 9134189 ~ 9138249 (-)
G1588044 NA non-coding downstream 98 9037540 ~ 9038194 (-)
G1588041 NA non-coding downstream 2825 9034154 ~ 9035467 (-)
G1588071 NA non-coding downstream 19900 9017057 ~ 9018392 (-)
G1588056 NA non-coding downstream 64416 8971470 ~ 8973876 (-)
G1588101 NA non-coding upstream 66749 9109725 ~ 9110203 (-)
G1588104 NA non-coding upstream 71626 9114602 ~ 9114840 (-)
G1588309 NA non-coding upstream 161160 9204136 ~ 9206158 (-)
LOC110534501 LOC106602245 non-coding upstream 174616 9217295 ~ 9225072 (-)
G1588003 LOC106610497 other downstream 84616 8902855 ~ 8953676 (-)
G1587567 NA other downstream 703414 8243558 ~ 8334878 (-)
G1587522 LOC106598223 other downstream 813259 8146257 ~ 8225033 (-)
LOC110500908 LOC106592107 other downstream 1145013 7886301 ~ 7908783 (-)
LOC110498432 NA other upstream 1093884 10134147 ~ 10145900 (-)
LOC110497368 LOC106610221 other upstream 2081412 11115879 ~ 11212126 (-)
G1590098 LOC106577701 other upstream 2227540 11270516 ~ 11270818 (-)
G1590583 NA other upstream 2598431 11641407 ~ 11641866 (-)
LOC110497375 LOC106610178 other upstream 3034742 11933020 ~ 12261321 (-)

Expression


Co-expression Network