LOC110498615 (LOC106602251)


Basic Information

Item Value
gene id LOC110498615
gene name LOC106602251
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 9052939 ~ 9064376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575265.2
TTTTGTGTTGactctgtagctagttagctaactaccATAACCTTGTTTTCTCTAAATACCTCTGGTATTTATATTTATTCGAATAGCTTCATATACAGTAAATGCTACAACTTAAATCTCGAAATTATAAAAAATGTTATCAGGACCGTCATGGAGAGAGACAACTTCCaacagtagctagcttgctaacgtaAGCTAGATAGCTTCCTAGCCTTTTGCTAGACTGGATCGTAACACTGACTCACCTGAACAAAAGTAGCTAAACGTTACCAACTcttaactgtagctagctacacatagACAGTTTGCTATGATGTCTGAAGCCATCGTAACCTTCCAGTCTCAGCTCTCCGGAGTCATGGAGACGGTATTCAAGGCTGCTATGTACGAGATCACCAGGCTGGTGGAGGATAGCTTCCTCAAGGAGGTGTCCCGGAGCCGGCAGCAGGTCGAGTCACTCAAGAAGCGGCTGCAGTTGTCGGAGAACAGGCGTACGGATGGGGACAGAGAGCTCGACCGTACGGGGAAGTGTGCGGACTGTGGGAGAGCTGACGAGGAAGCCGAGGAGAGAAGCTCTGGAACCTCACAGACAGGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTACCAGGGGAGGAGTGGAGCAGCTGTGGGGGCGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAGGCAGAGGCTACCAGCCCTAGGAGAATCTCTGAGGTAGGTAGGGGACTGACTAAACACATGGAGGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGGTAGGTAGGGGACTGACTAAACACATGGAGGCTGAGGCCACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGGGGCCGATGGTTCAGACGTCTCGGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACAGCGGTGCCAGGATGACTGGGGGTCCGCTCTAGACCAGGGGCCTGAACCACCGGGCCCCGAGGGAGAGCCAGAGGACCCCACCGACCCTCTCTACCGCCCCCGCTACAGCATGGAGGACCTTGGGGGCGCCTTTGAGAAGTCTGGTTACAGCGGTGATGGTGGTAGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGCGCTGACCTACGGAGCTGTGGGTCACTACCAGGTGAACCTGGGGGGGTCTGAGGGGGGAGACCATCACCATCGCTCCCACATGCCTCGCTCCCATCAGAGCCGGAGGGAGCAGGTGGGGTCGCCAACGCCATCCCCCCACCCGGAGGTGGGAGGCCGGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGTGTCTTGTACCCAGAACACGGTGTCCCAGAGTCAGGTAGTAGAGCCGGCCACAGGGGGCTAACCTCCATCCACTCTGGGAGCTCAgcccacaacaacaacacagagagccTGTATGGTGCTGCTGATGACTTTGGACTCTCTTTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggcgTCATGCCTGCAATCAATGTACCATGACCTTCCCAGACTTTGGTTCCCTCAAGGCCCACAAGCAGACACACAAAACTGGTAGAGAGTCAGGGTCTGGGCCTCCATACTCCTGCACCCAGTGCGGTAAGATCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGAGTCCACCAGGCAGAGGGACTTCACCTCTGCAGCCACTGCGGCAAGGGCTTCACCTCCTTCTCCGACCTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTCAAGCTGCATCAGCGCATTCACACGCAGGAGAAACCCCACCGCTGCACTATGTGTGACAAGAGCTTCACACGCGCAGACATTTTGAAAGTGCACCTGCGCATCCACACCGGGGAGAGACCTTACTGCTGCGCTGTGTGTGGACTCCGCTTCAAACGACTGGACCATCTGAAGTTGCACCAGCGCAAACACAGGCCGGATCTCCTGAACTGAAttaaaaaaagttacatttttgttatttagcatatgcttttatccaaagcgacttacttTTCATTCAACTTAGTTGGTtcgttattattttatttgacattgagaaaaaaaatgtttttgatcaATTGTTTATTAATAAGGACATTGAAAATATGAGCTGTTGGAAATCTAACCATGTGTTGAATAAGAATGTATGCCTTAAATGATACATTGTCTGTGAATTGTCTGTCATAATGACCATGCCAACCTACCAAACATTAGAATAATACTGCTTTCATGAAgtctgcagtggtgtaaagtacttaaggaaaaatactttaaagtactacttaagtagttttttggtgtATCTGTGCTttactatttatgttttttaCAACTTctccttttacttcactacattc
>XM_036954166.1
TTTTGTGTTGactctgtagctagttagctaactaccATAACCTTGTTTTCTCTAAATACCTCTGGTATTTATATTTATTCGAATAGCTTCATATACAGTAAATGCTACAACTTAAATCTCGAAATTATAAAAAATGTTATCAGGACCGTCATGGAGAGAGACAACTTCCaacagtagctagcttgctaacgtaAGCTAGATAGCTTCCTAGCCTTTTGCTAGACTGGATCGTAACACTGACTCACCTGAACAAAAGTAGCTAAACGTTACCAACTcttaactgtagctagctacacatagACAGTTTGCTATGATGTCTGAAGCCATCGTAACCTTCCAGTCTCAGCTCTCCGGAGTCATGGAGACGGTATTCAAGGCTGCTATGTACGAGATCACCAGGCTGGTGGAGGATAGCTTCCTCAAGGAGGTGTCCCGGAGCCGGCAGCAGGTCGAGTCACTCAAGAAGCGGCTGCAGTTGTCGGAGAACAGGCGTACGGATGGGGACAGAGAGCTCGACCGTACGGGGAAGTGTGCGGACTGTGGGAGAGCTGACGAGGAAGCCGAGGAGAGAAGCTCTGGAACCTCACAGACAGGTGTGGAGAGGGGGCGTGGCCTGAAGCAGGAGAAGGTACCAGGGGAGGAGTGGAGCAGCTGTGGGGGCGTGGCCAGGGAAACAGCCTTAAATGATCTGGAGGAGGCAGAGGCTACCAGCCCTAGGAGAATCTCTGAGTCCACAGAGGTCGGAGGTCAGAAGCTGGACAGTCTGCTGAAAGAGGAGGCTCTCCACAACACTGAGCTACAGGAGAGATGGGAGTTCTGCCTGGATGGGGCCGATGGTTCAGACGTCTCGGGGCCCAGTAAGAGTTTTATTCAGCAGGATCTACAGCGGTGCCAGGATGACTGGGGGTCCGCTCTAGACCAGGGGCCTGAACCACCGGGCCCCGAGGGAGAGCCAGAGGACCCCACCGACCCTCTCTACCGCCCCCGCTACAGCATGGAGGACCTTGGGGGCGCCTTTGAGAAGTCTGGTTACAGCGGTGATGGTGGTAGCGACCATCTTCTAGACATGGAAGGGCTGGATAGGCTTCCTGGTTCTCCGTCTCGTCTGGGGGCGCTGACCTACGGAGCTGTGGGTCACTACCAGGTGAACCTGGGGGGGTCTGAGGGGGGAGACCATCACCATCGCTCCCACATGCCTCGCTCCCATCAGAGCCGGAGGGAGCAGGTGGGGTCGCCAACGCCATCCCCCCACCCGGAGGTGGGAGGCCGGAACTGCCTGTTGATAAACGAGGAGGGGTACCTGCAGGACTCCAGTGTCTTGTACCCAGAACACGGTGTCCCAGAGTCAGGTAGTAGAGCCGGCCACAGGGGGCTAACCTCCATCCACTCTGGGAGCTCAgcccacaacaacaacacagagagccTGTATGGTGCTGCTGATGACTTTGGACTCTCTTTAAACCTCAGAGATCGTTCACAAGAGCAGGTaacaggaggaggggggaggcgTCATGCCTGCAATCAATGTACCATGACCTTCCCAGACTTTGGTTCCCTCAAGGCCCACAAGCAGACACACAAAACTGGTAGAGAGTCAGGGTCTGGGCCTCCATACTCCTGCACCCAGTGCGGTAAGATCTTCACCCAGGCCTGCAACCTCAAGGTCCACCAGCGAGTCCACCAGGCAGAGGGACTTCACCTCTGCAGCCACTGCGGCAAGGGCTTCACCTCCTTCTCCGACCTGAAGAGGCACAAGTGCAGCCAGACCACAGACAAGCCCTACTGCTGCTCCATCTGTGGGAACAAGTTCAGTCGGCTCTGGAACCTCAAGCTGCATCAGCGCATTCACACGCAGGAGAAACCCCACCGCTGCACTATGTGTGACAAGAGCTTCACACGCGCAGACATTTTGAAAGTGCACCTGCGCATCCACACCGGGGAGAGACCTTACTGCTGCGCTGTGTGTGGACTCCGCTTCAAACGACTGGACCATCTGAAGTTGCACCAGCGCAAACACAGGCCGGATCTCCTGAACTGAAttaaaaaaagttacatttttgttatttagcatatgcttttatccaaagcgacttacttTTCATTCAACTTAGTTGGTtcgttattattttatttgacattgagaaaaaaaatgtttttgatcaATTGTTTATTAATAAGGACATTGAAAATATGAGCTGTTGGAAATCTAACCATGTGTTGAATAAGAATGTATGCCTTAAATGATACATTGTCTGTGAATTGTCTGTCATAATGACCATGCCAACCTACCAAACATTAGAATAATACTGCTTTCATGAAgtctgcagtggtgtaaagtacttaaggaaaaatactttaaagtactacttaagtagttttttggtgtATCTGTGCTttactatttatgttttttaCAACTTctccttttacttcactacattc

Function

NR:

description
zinc finger and BTB domain-containing protein 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575265.2 False 2568 mRNA 0.51 4 9052939 9064376
XM_036954166.1 True 2442 mRNA 0.51 4 9052939 9064376

Neighbor

gene id symbol gene type direction distance location
LOC110497247 LOC106610465 coding upstream 18962 9027645 ~ 9033977 (+)
LOC118936441 LOC106610520 coding upstream 37380 9009778 ~ 9015559 (+)
LOC110497235 LOC106610498 coding upstream 58253 8984339 ~ 8994686 (+)
LOC110497233 LOC106602251 coding upstream 71624 8960599 ~ 8981315 (+)
LOC110518381 LOC106610525 coding upstream 99304 8909460 ~ 8953635 (+)
LOC110497243 LOC106610480 coding downstream 1938 9066314 ~ 9068577 (+)
LOC118941446 NA coding downstream 97433 9161809 ~ 9173405 (+)
LOC110534503 LOC106602246 coding downstream 157914 9125724 ~ 9291739 (+)
LOC110534506 LOC106610450 coding downstream 278477 9342853 ~ 9344549 (+)
LOC110533188 NA coding downstream 289345 9353721 ~ 9354705 (+)
G1587814 NA non-coding upstream 15544 9035623 ~ 9037395 (+)
G1587831 NA non-coding upstream 79391 8971437 ~ 8973548 (+)
G1587824 NA non-coding upstream 94963 8957102 ~ 8957976 (+)
G1587799 NA non-coding upstream 115297 8922260 ~ 8937642 (+)
G1587807 NA non-coding downstream 10731 9075107 ~ 9084300 (+)
G1587868 LOC100136185 non-coding downstream 23292 9087668 ~ 9090046 (+)
G1587882 NA non-coding downstream 46230 9110606 ~ 9110847 (+)
G1587883 NA non-coding downstream 49856 9114232 ~ 9114459 (+)
G1588108 NA non-coding downstream 56180 9120556 ~ 9121439 (+)
G1587790 LOC106610525 other upstream 105576 8900986 ~ 8947363 (+)
G1587727 LOC106598223 other upstream 208159 8739544 ~ 8844780 (+)
G1586672 NA other upstream 1996470 7054845 ~ 7056469 (+)
G1586200 NA other upstream 2690627 6361848 ~ 6362312 (+)
G1585983 NA other upstream 2882112 6169580 ~ 6170827 (+)
G1588177 LOC106610450 other downstream 278483 9342859 ~ 9413146 (+)
LOC110514468 LOC106602219 other downstream 359389 9422781 ~ 9425478 (+)
G1588532 LOC106610266 other downstream 746672 9798537 ~ 9814485 (+)
LOC110534552 LOC106602324 other downstream 765080 9829419 ~ 9847684 (+)
G1588675 NA other downstream 1068515 10132891 ~ 10135488 (+)

Expression


Co-expression Network