Item | Value |
---|---|
gene id | LOC110498648 |
gene name | hhip |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048583.1 |
NCBI id | CM023237.2 |
chromosome length | 67237266 |
location | 10915252 ~ 10964718 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
hhip | Predicted to enable catalytic activity. Acts upstream of or within fin development; negative regulation of muscle organ development; and negative regulation of smoothened signaling pathway. Is intrinsic component of plasma membrane. Is expressed in several structures, including axis; mesoderm; muscle cell; nervous system; and pharyngeal arch. Human ortholog(s) of this gene implicated in chronic obstructive pulmonary disease. Orthologous to human HHIP (hedgehog interacting protein). |
id | name | namespace |
---|---|---|
GO:0045879 | negative regulation of smoothened signaling pathway | biological_process |
GO:0048635 | negative regulation of muscle organ development | biological_process |
GO:0055114 | oxidation-reduction process | biological_process |
GO:0005975 | carbohydrate metabolic process | biological_process |
GO:0033333 | fin development | biological_process |
GO:0031226 | intrinsic component of plasma membrane | cellular_component |
GO:0048038 | quinone binding | molecular_function |
GO:0016901 | oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036954278.1 | False | 3973 | mRNA | 0.51 | 13 | 10917429 | 10964718 |
TU1820363 | False | 3450 | lncRNA | 0.44 | 2 | 10915252 | 10918795 |
TU1820364 | True | 3226 | lncRNA | 0.44 | 2 | 10915252 | 10918795 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110497364 | LOC106610217 | coding | downstream | 20151 | 10879787 ~ 10897278 (-) |
LOC110497363 | LOC106610230 | coding | downstream | 52446 | 10832619 ~ 10864983 (-) |
LOC110498645 | frem3 | coding | downstream | 105980 | 10759730 ~ 10811449 (-) |
LOC110497360 | LOC106602359 | coding | downstream | 168505 | 10739032 ~ 10748924 (-) |
LOC110497361 | LOC100380732 | coding | downstream | 182734 | 10665061 ~ 10734695 (-) |
LOC110497368 | LOC106610221 | coding | upstream | 151161 | 11115879 ~ 11212126 (-) |
LOC118941455 | NA | coding | upstream | 567546 | 11532264 ~ 11542073 (-) |
LOC110497372 | prmt9 | coding | upstream | 583687 | 11548405 ~ 11562995 (-) |
mra | mra | coding | upstream | 679839 | 11644557 ~ 11742079 (-) |
LOC110497375 | LOC106610178 | coding | upstream | 968302 | 11933020 ~ 12261321 (-) |
G1589642 | NA | non-coding | downstream | 96725 | 10820450 ~ 10820704 (-) |
G1589640 | NA | non-coding | downstream | 97179 | 10819659 ~ 10820250 (-) |
G1589639 | NA | non-coding | downstream | 97963 | 10819231 ~ 10819466 (-) |
G1589599 | NA | non-coding | downstream | 181296 | 10735912 ~ 10736133 (-) |
G1589820 | NA | non-coding | upstream | 43760 | 11008478 ~ 11008690 (-) |
G1589845 | NA | non-coding | upstream | 75227 | 11039945 ~ 11040286 (-) |
G1590016 | NA | non-coding | upstream | 168379 | 11133097 ~ 11133706 (-) |
G1590027 | NA | non-coding | upstream | 203656 | 11168374 ~ 11168820 (-) |
LOC110498432 | NA | other | downstream | 771860 | 10134147 ~ 10145900 (-) |
LOC118941443 | NA | other | downstream | 1949125 | 8965525 ~ 8971363 (-) |
G1588003 | LOC106610497 | other | downstream | 1963753 | 8902855 ~ 8953676 (-) |
G1587567 | NA | other | downstream | 2582551 | 8243558 ~ 8334878 (-) |
G1587522 | LOC106598223 | other | downstream | 2692396 | 8146257 ~ 8225033 (-) |
G1590098 | LOC106577701 | other | upstream | 305798 | 11270516 ~ 11270818 (-) |
G1590583 | NA | other | upstream | 676689 | 11641407 ~ 11641866 (-) |
G1591322 | NA | other | upstream | 1287073 | 12251791 ~ 12252528 (-) |
G1589797 | NA | non-coding | upstream | 18921 | 10937716 ~ 10938850 (-) |