Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497381 |
| gene name | gatb |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 12344938 ~ 12363994 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| gatb | Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Is expressed in serotonergic neurons. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to human GATB (glutamyl-tRNA amidotransferase subunit B). |
| description |
|---|
| glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | molecular_function |
| id | description |
|---|---|
| K02434 | gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036954308.1 | True | 2380 | mRNA | 0.51 | 13 | 12344938 | 12363994 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sh3d19 | LOC106610182 | coding | downstream | 43812 | 12277543 ~ 12301126 (-) |
| LOC110497375 | LOC106610178 | coding | downstream | 83617 | 11933020 ~ 12261321 (-) |
| mra | mra | coding | downstream | 602859 | 11644557 ~ 11742079 (-) |
| LOC110497372 | prmt9 | coding | downstream | 781943 | 11548405 ~ 11562995 (-) |
| LOC118941455 | NA | coding | downstream | 802865 | 11532264 ~ 11542073 (-) |
| fbxw7 | fbxw7 | coding | upstream | 162769 | 12526763 ~ 12624575 (-) |
| LOC118941457 | NA | coding | upstream | 281326 | 12645320 ~ 12737217 (-) |
| tmem154 | LOC106602392 | coding | upstream | 378078 | 12742072 ~ 12767164 (-) |
| LOC110497386 | LOC106602389 | coding | upstream | 855073 | 13219067 ~ 13221750 (-) |
| LOC110497387 | LOC106602387 | coding | upstream | 862175 | 13226169 ~ 13239221 (-) |
| G1591334 | rs3a | non-coding | downstream | 67956 | 12275496 ~ 12276982 (-) |
| G1591332 | NA | non-coding | downstream | 75420 | 12269269 ~ 12269518 (-) |
| G1591329 | NA | non-coding | downstream | 80872 | 12262601 ~ 12264066 (-) |
| G1591328 | NA | non-coding | downstream | 82408 | 12262248 ~ 12262530 (-) |
| G1591300 | NA | non-coding | downstream | 130576 | 12213920 ~ 12214362 (-) |
| G1591447 | NA | non-coding | upstream | 81326 | 12445320 ~ 12446561 (-) |
| G1591672 | NA | non-coding | upstream | 101259 | 12465253 ~ 12465460 (-) |
| G1591687 | NA | non-coding | upstream | 125110 | 12489104 ~ 12489404 (-) |
| G1591690 | NA | non-coding | upstream | 127974 | 12491968 ~ 12492175 (-) |
| G1591695 | NA | non-coding | upstream | 136111 | 12500105 ~ 12500308 (-) |
| G1591322 | NA | other | downstream | 92410 | 12251791 ~ 12252528 (-) |
| G1590583 | NA | other | downstream | 703072 | 11641407 ~ 11641866 (-) |
| G1590098 | LOC106577701 | other | downstream | 1074120 | 11270516 ~ 11270818 (-) |
| LOC110497368 | LOC106610221 | other | downstream | 1166821 | 11115879 ~ 11212126 (-) |
| G1593032 | spcs3 | other | upstream | 1461565 | 13825559 ~ 13829469 (-) |
| G1595424 | NA | other | upstream | 2119431 | 14483425 ~ 14483790 (-) |
| LOC110498659 | LOC106610072 | other | upstream | 2895898 | 15246799 ~ 15287139 (-) |
| G1596136 | LOC106610103 | other | upstream | 3436259 | 15800253 ~ 15901185 (-) |
