Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497393 |
| gene name | LOC106610164 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 13672694 ~ 13754770 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036954320.1 | False | 4333 | mRNA | 0.44 | 7 | 13672694 | 13728828 |
| XM_021573477.2 | False | 3754 | mRNA | 0.43 | 7 | 13672694 | 13754770 |
| XM_036954321.1 | False | 2060 | mRNA | 0.52 | 7 | 13675663 | 13728832 |
| TU1824029 | True | 879 | lncRNA | 0.36 | 2 | 13672695 | 13693040 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497392 | LOC106610166 | coding | downstream | 113172 | 13453299 ~ 13559522 (-) |
| LOC110497391 | LOC106610167 | coding | downstream | 220172 | 13422278 ~ 13452522 (-) |
| LOC110497390 | LOC106610168 | coding | downstream | 289742 | 13367898 ~ 13382952 (-) |
| LOC110497388 | LOC106602386 | coding | downstream | 402385 | 13268268 ~ 13270309 (-) |
| LOC110497387 | LOC106602387 | coding | downstream | 433473 | 13226169 ~ 13239221 (-) |
| LOC110497394 | LOC106610162 | coding | upstream | 59465 | 13814235 ~ 13824838 (-) |
| vegfc | LOC106610161 | coding | upstream | 128542 | 13883312 ~ 13944041 (-) |
| LOC110497396 | LOC106610063 | coding | upstream | 1136995 | 14891765 ~ 14936266 (-) |
| LOC110497398 | xpa | coding | upstream | 1237740 | 14992510 ~ 14997435 (-) |
| LOC110498656 | LOC106610071 | coding | upstream | 1248082 | 15002852 ~ 15016671 (-) |
| G1592802 | NA | non-coding | downstream | 83637 | 13588833 ~ 13589057 (-) |
| G1592800 | NA | non-coding | downstream | 87093 | 13585383 ~ 13585601 (-) |
| G1592799 | NA | non-coding | downstream | 87656 | 13584761 ~ 13585038 (-) |
| G1592796 | NA | non-coding | downstream | 89169 | 13583161 ~ 13583525 (-) |
| G1592781 | NA | non-coding | downstream | 97107 | 13575273 ~ 13575587 (-) |
| G1593026 | NA | non-coding | upstream | 29627 | 13784397 ~ 13784974 (-) |
| G1593032 | spcs3 | non-coding | upstream | 70789 | 13825559 ~ 13829469 (-) |
| G1593089 | NA | non-coding | upstream | 122969 | 13877739 ~ 13879805 (-) |
| G1593147 | NA | non-coding | upstream | 135061 | 13889831 ~ 13891378 (-) |
| G1591322 | NA | other | downstream | 1420166 | 12251791 ~ 12252528 (-) |
| LOC110497375 | LOC106610178 | other | downstream | 1468280 | 11933020 ~ 12261321 (-) |
| G1590583 | NA | other | downstream | 2030828 | 11641407 ~ 11641866 (-) |
| G1590098 | LOC106577701 | other | downstream | 2401876 | 11270516 ~ 11270818 (-) |
| G1595424 | NA | other | upstream | 728655 | 14483425 ~ 14483790 (-) |
| LOC110498659 | LOC106610072 | other | upstream | 1505122 | 15246799 ~ 15287139 (-) |
| G1596136 | LOC106610103 | other | upstream | 2045483 | 15800253 ~ 15901185 (-) |
| G1596285 | NA | other | upstream | 2270157 | 16024927 ~ 16025915 (-) |
| G1592935 | NA | non-coding | upstream | 3758 | 13696798 ~ 13706843 (-) |
| G1592990 | NA | non-coding | upstream | 28229 | 13721269 ~ 13724184 (-) |
