LOC110498530 (LOC106610072)


Basic Information

Item Value
gene id LOC110498530
gene name LOC106610072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 16196839 ~ 16199614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575198.2
CCAAGAACAATATCCGCGGCAGCGTTTTTATTGTTATTTAGACATTTATCACCTTGGAACTTAAAATATTACTTCTAACTGCACAGCATCACATACTTACCTCGGGCAGTGTTTAATTCGCGTTGGAGACAGGACTTGGTTGATAGATGTTATCAAGGgaacgttagctagctgctaACAACAATGGCTAACAGTAGGCctatggtttttcacactcaaatagcctccatcatggaggtgctagcgaatgcagccgtggcagacatctgtaaactcgtagacgacgactatgcagtgtttcgtttggaaataactcaaagccagaaTGAAAGCAGGGCattgcggaggaaactacagctACTTGAAATGAAGGTGACACGGGAGCGCGCAGAGAGAACAACGCGAGAGCGCGTCCTCGCCagtcgtcccagtagtgtcaagatTCTCGACCGATACAaaggaatggcaagagGTGAAGCACATCTCACTGGAGGCTACAGGAGTTCTGTGAAACCAGCgggacacaatacatggagagatgaccaaccaatcacCGTTGATGAGGagagtggaacctcaacccagcatgTTATTGTGATAGAGTCTGCAGATGAAAATGCAGCAGGTCCTGGGGTTAAGCTGGAGAGGACTGAACGAGAGAAGGACCCACGGCACCAGACTGGAGCAGCGGTTGGAGTGTCGCCCTCTGTAGCCAGTGAGGAACTCGCCGCTGCGCCAAAGGCCAGGACCCGACGCAGAatcacggaggtcagtggaacgcTGAACGCCGTCCTCAAGTCAGAGTCAGACACCGAGACTTTAACTGTAACACAAAGGCCCTTACAACCAGGATCTGACTACagatcagacccagagagactgggctgtccACCTGTTCCCGGCTCAGAATACTTTCTGGTATTTCACCAGAGCCAGGGGACAGTTAATTCCCGTGGAGATGGTGACACGTTAGACACTGGCGGTGATCCATCTTGTTCTTACGCTACAGAGATGGACCCTGGCAACATGCTCATGGGTTTAGAGACACAGACTgatctgtctagaggggacttgaaCCGGGacagtagtagtgtatactctgaagggtgcCTAGATAAGAAAGGGGAGGTTCTAGTGGTAGATGaggtgactgtgaaagtggagGGCGACGCTCCTCCCACATGGAATGCAGATAGTCACTTAGAAGATGGACACTCACAGAACAGAGATTTCTTTGATTACAGGGGAAGCTTAGATACAAATCTAAATGTCGCGACCCACTCTCCTTTACACTCGTTCAGGGATCCCGATGCCGTATTCACGTCGAAGGCACTTTCCGATTCACATGGCAGCGTTCTTTTCAATCAGGCATTGAACTCAAATGACAGGGTTATAGCCCAGGCTCAGGGAGGGGGGGCCACATCTGGCAATAATAAAGAgaaacggttcctctgcatgttctgtaacaaaggcttcagctgcccccagaaggtggagatccaccagagggtccacacaggagagaaacccttcagctgtacccagtgtcataTGTGCTTTGCCGAGGCTGgcaacctgaagaggcaccagagggtccacacaggggtgaaacccttcagctgtacccagtgtcaaaTGCGCTTCGCTCAGGCTGgtgacctgaagaggcaccagagggtccacacaggggagaaaccattcAGTTGCCCCCACTGTGAGAAGAGGTTTTCCCGCCAGCACcagctgaagatgcacctgaaggtTCACACGGAAGAGAGGCCATTCGCCTGTACGCACTGCaggaagaggttctcagagaggagctacctcaggatacaccagcagaaaaaccaTTCCACTCAATAGCATACTAAGTAACCCTTCCATTCGATAGCTTCTGACCTTTAGATCAAACTATTCATTAAAGACAGATTCGTTTTCATTGTTGTCAGCATAAAGATAACATGAGTAATAGATTTCAGTGTTGAATATTTCTGGGTTGAATATTGTTATATATGGTATATATTTCAGCCTAAAAAGTCTGTTAGATGTTGTGTTTGTACGGTTTAGCCTATATAATGTTCACAAATGCCTGTTTCATTACTTCTATTCAACTACTTAATGTTTTTCTTAAGACACTTGTAATGAGAAATTGAATGCAATTCATCTAGTTCATGCAGAtttttgttgtgtgtatgtgtggttttcATGTGATGTATTTAAAACTTGTTTATGTTTAATAAACACAAAATGGGACATTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575198.2 True 2261 mRNA 0.47 3 16196839 16199614

Neighbor

gene id symbol gene type direction distance location
LOC118941350 NA coding upstream 16231 16165594 ~ 16180608 (+)
LOC110498473 LOC106610080 coding upstream 106458 16067316 ~ 16090381 (+)
LOC110498491 LOC106610069 coding upstream 176973 16006714 ~ 16019866 (+)
LOC118941337 NA coding upstream 202418 15989218 ~ 15994421 (+)
LOC110498463 LOC106610126 coding upstream 235900 15937100 ~ 15960939 (+)
LOC110498487 zn271 coding downstream 20321 16219935 ~ 16238389 (+)
LOC110498467 LOC106610080 coding downstream 51018 16250632 ~ 16389202 (+)
LOC110498495 LOC106610080 coding downstream 88353 16287967 ~ 16299379 (+)
LOC118941341 LOC106610088 coding downstream 196653 16396267 ~ 16400719 (+)
LOC110498500 LOC106602480 coding downstream 202081 16401695 ~ 16406558 (+)
G1594618 NA non-coding upstream 26695 16169733 ~ 16170144 (+)
G1594568 NA non-coding upstream 34488 16059425 ~ 16162351 (+)
G1594544 NA non-coding upstream 209767 15983345 ~ 15987072 (+)
G1594471 NA non-coding upstream 402032 15794433 ~ 15794807 (+)
G1594469 NA non-coding upstream 404281 15792173 ~ 15792558 (+)
G1594635 NA non-coding downstream 6156 16205770 ~ 16206000 (+)
G1594337 NA non-coding downstream 51790 16251404 ~ 16252614 (+)
G1594677 NA non-coding downstream 125006 16324620 ~ 16341756 (+)
G1594727 NA non-coding downstream 217712 16417326 ~ 16417888 (+)
G1594731 NA non-coding downstream 221857 16421471 ~ 16421785 (+)
LOC110498508 LOC106610084 other upstream 86052 16095706 ~ 16211886 (+)
LOC110498465 LOC106602409 other upstream 156930 16033737 ~ 16243741 (+)
G1594334 LOC106609878 other upstream 228295 15964983 ~ 15968544 (+)
G1594340 NA other upstream 380146 15815640 ~ 15816693 (+)
LOC110498515 LOC106610069 other upstream 396317 15799279 ~ 15887743 (+)
G1594292 LOC106610101 other downstream 79676 16279290 ~ 16284203 (+)
G1594737 LOC106610136 other downstream 234982 16434453 ~ 16436367 (+)
G1594895 NA other downstream 475995 16675609 ~ 16678122 (+)
G1594955 NA other downstream 565929 16765543 ~ 16773709 (+)

Expression

LOC110498530(LOC106610072) Expression in all Baseline Samples

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LOC110498530(LOC106610072) Expression in each Bioproject

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LOC110498530(LOC106610072) Expression in each Sample
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Co-expression Network