LOC110497419 (LOC106602599)


Basic Information

Item Value
gene id LOC110497419
gene name LOC106602599
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17107788 ~ 17116745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110497419
GTCAAATGTTGGCAGAAAAACTGGCCGGGCAGGTCGAGCGTACCAATGAGTGTTGTGGGGAAGCTTGTTACCAGTAAACTTTTGTGTTGTAGCTTGTGATTCACGGCACACACCGGTGAGATGGTGAAAAAACTATTCTGCAGGCTTTTGCTTTTAGGTCTCTTATATTTCTCAGTATATTTCTGGTACTCAAATGTTACTGAATCGAGTAGGAATGCTTTGCTGTCCAGTTTGAAGGATAACCAAACTGAAGGTGGATTAATAAAATCAGGAGTCTATTATAGAGTTATCCGCTTGCAGTCACTTCGGAAAAggaacaaataatgaaagaaaataAAACTACAGAGACCAAAACCCACAAAACCCCCTTTGTGACCGAGGAATTCAAGAAATGCCCAGATCCCTCTCCACTTCTTGGGTGGAGTTCTCTACGCCAGGTCTGTAGGGAGGTGGTCGCTACAAACCACATGACTGCATCGCCCTCCAGAAGGTTGCTCTCAACATCCCCTTCCGCCATCGTGAAGAGCACCTTAAGTTCTGACTCCACTACCTCCATCCTGTCTTACAGCGCCAACAGCTGAACTATGGCATCTATGTTATCAATGAGGATGGAGAGAACATGTTCAACAGGGCCAAGCTGGTGAACATTGGCTATGCTGAGGCCCTGAAAGAGTATGACTACGACTGCTTTGTGTTCAGTGGCGTGGACATCATCCCCATGGATGACCGCAACCCCTACAAATGCTTCAGCCAGCCCAGACACCTGTCTGTCTCCATGGACAAGTACGTGTGATGTCCTATTGCAGTGCCACAGTACGATGTCGACCTCGAAAGATAACCTTTATTTTTGAGTGAACTATCACTTTAAATGATTaaatgctgactcagtggttgtTAATGTTTCCTCATACCTACTGTATTACCCAGGGGGGGAAAGGACTCTAAGGGCTCGATgcaatctgtatcgctgaagcgTTAGAGATTACGCCATTTAAATGTGAAGGTATTTCCCGATGGAACCGACATATGCAGGGTTTCCCCGGGAATGCAGTCTCCACTAACACAGGAACATTGCTTTTAAATGTAACTCTGGCTACAACGCAGAACTTTAGCGCTACGGATTGAATAGATCCCTAACACTTCTTCAATTCCTAGCATCGGAGGCCACAGCACGACAGAACAGTAATAATATAATATGCCATAATATATATTTGACATTTAGCAAACACTCTTATCCAAAGTgacatgcatgcatgcattttGTTGGCACCGGGAATCCAACCCACTATTCTGAGTGATCCACTCACGGAGCTGCAGTGGACCACCAAGGGAGAGCCCGTCATGTCCAACGCGTGGCTATCACAGCTCCTCGCATATCTAGCATATCTGTTTTTTCTGATTGAGCATATCGATTTTTTGATTGTCTTCCTCTCATCCATAGTTTACCCGATAATCAGTTCTTTGGTGGTGTCTCATCGTTGAGTAAGGAGCAGcgtcattgtcacgccctgaccttagttatctttgttttctttattattttggttaggtcagggtgtgacgagggtggtttgtttagtttttgtattgtctagggttttttgtatg
>TU1828406
ATGGTGAAAAAACTATTCTGCAGGCTTTTGCTTTTAGGTCTCTTATATTTCTCAGTATATTTCTGGTACTCAAATGTTACTGAATCGAGTAGGAATGCTTTGCTGTCCAGTTTGAAGGATAACCAAACTGAAGGTGGATTAATAAAATCAGGAGTCTATTATAGAGTTATCCGCTTGCAGTCACTTCGGAAAAggaacaaataatgaaagaaaataAAACTACAGAGACCAAAACCCACAAAACCCCCTTTGTGACCGAGGAATTCAAGAAATGCCCAGATCCCTCTCCACTTCTTGTGGGGCCTTTCAGGGTGGAGTTCTCTACGCCAGGTCTGTAGGGAGGTGGTCGCTACAAACCACATGACTGCATCGCCCTCCAGAAGGTTGCTCTCAACATCCCCTTCCGCCATCGTGAAGAGCACCTTAAGTTCTGACTCCACTACCTCCATCCTGTCTTACAGCGCCAACAGCTGAACTATGGCATCTATGTTATCAATGAGGATGGAGAGAACATGTTCAACAGGGCCAAGCTGGTGAACATTGGCTATGCTGAGGCCCTGAAAGAGTATGACTACGACTGCTTTGTGTTCAGTGGCGTGGACATCATCCCCATGGATGACCGCAACCCCTACAAATGCTTCAGCCAGCCCAGACACCTGTCTGTCTCCATGGACAAGTACGTGTGATGTCCTATTGCAGTGCCACAGTACGATGTCGACCTCGAAAGATAACCTTTATTTTTGAGTGAACTATCACTTTAAATGATTaaatgctgactcagtggttgtTAATGTTTCCTCATACCTACTGTATTACCCAGGGGGGGAAAGGACTCTAAGGGCTCGATgcaatctgtatcgctgaagcgTTAGAGATTACGCCATTTAAATGTGAAGGTATTTCCCGATGGAACCGACATATGCAGGGTTTCCCCGGGAATGCAGTCTCCACTAACACAGGAACATTGCTTTTAAATGTAACTCTGGCTACAACGCAGAACTTTAGCGCTACGGATTGAATAGATCCCTAACACTTCTTCAATTCCTAGCATCGGAGGCCACAGCACGACAGAACAGTAATAATATAATATGCCATAATATATATTTGACATTTAGCAAACACTCTTATCCAAAGTgacatgcatgcatgcattttGTTGGCACCGGGA
>TU1828407
ATGGTGAAAAAACTATTCTGCAGGCTTTTGCTTTTAGGTCTCTTATATTTCTCAGTATATTTCTGGTACTCAAATGTTACTGAATCGAGTAGGAATGCTTTGCTGTCCAGTTTGAAGGATAACCAAACTGAAGGTGGATTAATAAAATCAGGAGTCTATTATAGAGTTATCCGCTTGCAGTCACTTCGGAAAAggaacaaataatgaaagaaaataAAACTACAGAGACCAAAACCCACAAAACCCCCTTTGTGACCGAGGAATTCAAGAAATGCCCAGATCCCTCTCCACTTCTTGGGTGGAGTTCTCTACGCCAGGTCTGTAGGGAGGTGGTCGCTACAAACCACATGACTGCATCGCCCTCCAGAAGGTTGCTCTCAACATCCCCTTCCGCCATCGTGAAGAGCACCTTAAGTTCTGACTCCACTACCTCCATCCTGTCTTACAGCGCCAACAGCTGAACTATGGCATCTATGTTATCAATGAGGATGGAGAGAACATGTTCAACAGGGCCAAGCTGGTGAACATTGGCTATGCTGAGGCCCTGAAAGAGTATGACTACGACTGCTTTGTGTTCAGTGGCGTGGACATCATCCCCATGGATGACCGCAACCCCTACAAATGCTTCAGCCAGCCCAGACACCTGTCTGTCTCCATGGACAAGTACGTGTGATGTCCTATTGCAGTGCCACAGTACGATGTCGACCTCGAAAGATAACCTTTATTTTTGAGTGAACTATCACTTTAAATGATTaaatgctgactcagtggttgtTAATGTTTCCTCATACCTACTGTATTACCCAGGGGGGGAAAGGACTCTAAGGGCTCGATgcaatctgtatcgctgaagcgTTAGAGATTACGCCATTTAAATGTGAAGGTATTTCCCGATGGAACCGACATATGCAGGGTTTCCCCGGGAATGCAGTCTCCACTAACACAGGAACATTGCTTTTAAATGTAACTCTGGCTACAACGCAGAACTTTAGCGCTACGGATTGAATAGATCCCTAACACTTCTTCAATTCCTAGCATCGGAGGCCACAGCACGACAGAACAGTAATAATATAATATGCCATAATATATATTTGACATTTAGCAAACACTCTTATCCAAAGTgacatgcatgcatgcattttGTTGGCACCGGGA

Function

NR:

description
PREDICTED: beta-1,4-galactosyltransferase 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110497419 False 1608 mRNA 0.44 4 17107788 17116745
TU1828406 False 1168 lncRNA 0.44 4 17108121 17116625
TU1828407 True 1155 lncRNA 0.44 4 17108121 17116625
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118936405 NA coding downstream 60 17105468 ~ 17107728 (-)
LOC110497417 LOC106602598 coding downstream 11917 17087490 ~ 17095871 (-)
LOC110498489 LOC106610080 coding downstream 93447 17001904 ~ 17014341 (-)
LOC110498533 LOC106609873 coding downstream 109412 16994528 ~ 16998376 (-)
LOC110498541 b2m coding downstream 118052 16962490 ~ 16989736 (-)
LOC110497421 cplx1 coding upstream 59063 17175808 ~ 17187139 (-)
clta LOC106609887 coding upstream 127675 17244420 ~ 17254764 (-)
LOC110497426 LOC106576595 coding upstream 172335 17289080 ~ 17305024 (-)
LOC110497427 LOC106602593 coding upstream 192669 17309414 ~ 17326408 (-)
LOC110498555 LOC106609917 coding upstream 243193 17359938 ~ 17366305 (-)
G1596740 NA non-coding downstream 24106 17081242 ~ 17083682 (-)
G1596739 NA non-coding downstream 65492 17041390 ~ 17042296 (-)
G1596682 NA non-coding downstream 210963 16896626 ~ 16896825 (-)
G1596681 NA non-coding downstream 211449 16896122 ~ 16896339 (-)
G1596784 NA non-coding upstream 23704 17140449 ~ 17140866 (-)
G1596785 NA non-coding upstream 24154 17140899 ~ 17141186 (-)
G1596793 NA non-coding upstream 35152 17151897 ~ 17152108 (-)
G1596853 LOC106602595 non-coding upstream 118656 17235401 ~ 17237934 (-)
G1596854 NA non-coding upstream 121513 17238258 ~ 17238764 (-)
LOC110498506 LOC106609878 other downstream 176338 16924529 ~ 16931521 (-)
LOC110498466 LOC106606466 other downstream 519621 16523595 ~ 16588239 (-)
LOC110498461 LOC106610045 other downstream 666816 15669157 ~ 16441067 (-)
G1596503 LOC106610088 other downstream 704315 16402831 ~ 16403473 (-)
LOC110498490 zn271 other downstream 927104 16178232 ~ 16191766 (-)
G1596856 LOC106613263 other upstream 125861 17242606 ~ 17243023 (-)
G1596879 NA other upstream 169785 17286530 ~ 17288017 (-)
G1596940 NA other upstream 320919 17437664 ~ 17437878 (-)
G1596970 LOC106609899 other upstream 377924 17494669 ~ 17530745 (-)
LOC110497446 NA other upstream 499217 17615897 ~ 17623476 (-)

Expression

LOC110497419(LOC106602599) Expression in all Baseline Samples

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LOC110497419(LOC106602599) Expression in each Bioproject

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LOC110497419(LOC106602599) Expression in each Sample
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Co-expression Network