LOC118941458 (LOC106602533)


Basic Information

Item Value
gene id LOC118941458
gene name LOC106602533
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17146217 ~ 17151611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954347.1
CAGAGTCAGAACAGGGAGTCCATCACTCAGGTGAAACAGAGTGAGAGGTGAGTGGAAGGAACACATGTTTTAGTATGAGAGGTGTGGAGGGCACTAACGCATACCATTGTGTAAGACATAGGTGGTTTGTGATGTTATATCGTATTCAATGTCATTTGATGTAACGTTACTGCAAAATGTCTTCTCTGCATTCAAATAGTACCAACAGATATTGCTCTACCTCTGTTTTTCTTCAGGCCAGACAAGAAATGTACCTTTTCATTCTAGACAACCATCGCATTTCGAATACCACCCAGAAAGCTCCTGCTCCCTCCGTTACCATCAGTAACGTCTCTGCTCCTCCTCCGACGCCCAAAGCCCTTCAGCCGGGAGGCTACAACCCCCAGGTGGTCCAGAGTCGGATCTCTGAAGTGCTGAAGAAGTACTACAGTGGTCTGTGGCTGTCCAAGCTGCCCTGTGTGTACCGGGACATGCACAACCAGGACCTACCTGGCCAAGGGGTCATAGACCTGGAGAACTGGACACATGTCTGCTCAGTTGAGAAGCCCGTTAGTACCAATCGAGCAGATAGGCTGGTCTACCCCCCTCAGCCCAAACCCCCCAGCCTTGCTGTCGCACCAGTCAAACCCGCAACGGCCCCTTATACTGTCAAACCAGTGACAACCCTCCTAGCTAAACCCATCACTACCGCTCCAGTCAAACCAGTCACCACCAACCCAATGAAACTGGCCCCTCTATTCTACTCACTGCAGAGCCCCTCCTTGAACCAGAGTCAGACCTCGCCCACTCCACCGGCCCCCTCGTGGAAGCACTCCCCGACCAATACCCCCACCTCTCCAACTGCCCCCTCTACCTTGTGGAAGccctctccttcccaccttctccCTACACCCACCTGTAATTTGTGGAAACCCTCCCCTACTTCCACCTCGCCCTCATGGAAGCCCACAACTACCACTTTCTCCCCTACTCCCCCCCCCAACTCCTCCCTTCCTCACCTCCCCCACATGGATGGGCTCCCCTACCCCACCACCcctatcccccctctcccctacaGCGGTGAGCATCCCTGCGGAGGCGTGCCTCAGACTGAAGGAGCTGCTGTCTAAATACAGTGACGGCCTGTGGGCCCACGCCCTACCAGGAGACCTTCAAGGCCCCCCTTCCCAGAGGACATCCTGGCCAACATGTCTCTCTTACAGGACATCTGCACTGTGGAGTACCCCATGCCCGACAACAAAAATAGGGCCATCCTTTCTGCCACGGAGTAGAAGGCCAAGATAGGGCTGCCTGTTCTCCTCCAGAAATATTATTGTATTTATTCATTGTTTAATTCAGGTGATCATATATTGGAGTCATTTCTGATTCTGAGTCGGGAATCGACTCTTGAAATTGATTCTCTCTCAATCCTGAGCCGACTCCAATAGAAGAAACTGGTAGAAAACACATTGGCACAACTGTAGTAAGGTATGTTGTTTGGACATGCAGATGAGCAGCACCCCGTCCTCCCCGTCGGGTTATAAGCTCAACAGCACCCACATGGTTCCTCCACTGCTGCTCCCCAAGGAGGAGTTCCCCTCAGTGCTGGTTGTGGAGGCAAGCAGCATCGACCTGGTCATCCTCAGGTAACTTATTTCTTTGGTCATTTGATTATTTCTTTTGATAAATTGCTCGTCTTCGACGTTGCAATTTCGAGGGCATTTCATGAACTTTTCAGGTCATTTTTGCCACCAAA
>XR_005037664.1
CAGAGTCAGAACAGGGAGTCCATCACTCAGGTGAAACAGAGTGAGAGGTGAGTGGAAGGAACACATGTTTTAGTATGAGAGGTGTGGAGGGCACTAACGCATACCATTGTGTAAGACATAGGTGGTTTGTGATGTTATATCGTATTCAATGTCATTTGATGTAACGTTACTGCAAAATGTCTTCTCTGCATTCAAATAGTACCAACAGATATTGCTCTACCTCTGTTTTTCTTCAGGCCAGACAAGAAATGTACCTTTTCATTCTAGACAACCATCGCATTTCGAATACCACCCAGAAAGCTCCTGCTCCCTCCGTTACCATCAGTAACGTCTCTGCTCCTCCTCCGACGCCCAAAGCCCTTCAGCCGGGAGGCTACAACCCCCAGGTGGTCCAGAGTCGGATCTCTGAAGTGCTGAAGAAGTACTACAGTGGTCTGTGGCTGTCCAAGCTGCCCTGTGTGTACCGGGACATGCACAACCAGGACCTACCTGGCCAAGGGGTCATAGACCTGGAGAACTGGACACATGTCTGCTCAGTTGAGAAGCCCGTTAGTACCAATCGAGCAGATAGGCTGGTCTACCCCCCTCAGCCCAAACCCCCCAGCCTTGCTGTCGCACCAGTCAAACCCGCAACGGCCCCTTATACTGTCAAACCAGTGACAACCCTCCTAGCTAAACCCATCACTACCGCTCCAGTCAAACCAGTCACCACCAACCCAATGAAACTGGCCCCTCTATTCTACTCACTGCAGAGCCCCTCCTTGAACCAGAGTCAGACCTCGCCCACTCCACCGGCCCCCTCGTGGAAGCACTCCCCGACCAATACCCCCACCTCTCCAACTGCCCCCTCTACCTTGTGGAAGccctctccttcccaccttctccCTACACCCACCTGTAATTTGTGGAAACCCTCCCCTACTTCCACCTCGCCCTCATGGAAGCCCACAACTACCACTTTCTCCCCTACTCCCCCCCCCAACTCCTCCCTTCCTCACCTCCCCCACATGGATGGGCTCCCCTACCCCACCACCcctatcccccctctcccctacaGCGGTGAGCATCCCTGCGGAGGCGTGCCTCAGACTGAAGGAGCTGCTGTCTAAATACAGTGACGGCCTGTGGGCCCACGCCCTACCAGGAGACCTTCAAGGCCCCCCTTCCCAGAGGACATCCTGGCCAACATGTCTCTCTTACAGGACATCTGCACTGTGGAGTACCCCATGCCCGACAACAAAAATAGGGCCATCCTTTCTGCCACGGAGTAGAAGGCCAAGATAGGGCTGCCTGTTCTCCTCCAGAAATATTATTGTATTTATTCATTGTTTAATTCAGGTGATCATATATTGGAGTCATTTCTGATTCTGAGTCGGGAATCGACTCTTGAAATTGATTCTCTCTCAATCCTGAGCCGACTCCAATAGAAGAAACTGGTAGAAAACACATTGGCACAACTGTAGTAAGGTATGTTGTTTGGACATGCAGATGAGCAGCACCCCGTCCTCCCCGTCGGGTTATAAGCTCAACAGCACCCACATGGTTCCTCCACTGCTGCTCCCCAAGGAGGAGTTCCCCTCAGTGCTGGTTGTGGAGGCAAGCAGCATCGACCTGGTCATCCTCAGGTGTACTAGGTGGAACATGGCTTCTCTGAGGTCCTCAGTAGAACCACACTATTGGAGCTGCAGAAAGACTTCCTCAAGCTGCCCTTCCAGGCGGCTGTCTACTAGCTGGTAACCAAGTTCAGCTCCCATTTCCCCCATTTCTTCTGAGCGTTGCAACTACGATGTGTCTACTGAAAAGGATTAGTTGGAAAGACGAGTTGGGTTTTGTGTGATGGAGAATACAAGCAGTTAGCTAAATGTAATGTTTATTTACACGTGACACGTCACCACAGTTAGTGGTATTCCACGTTCCTGTGTGTTTAATCTGCTGTCTTTATCCTTCAGGGATCCTCTCATATCTAAGTACCTCTGGGATGTAATATGGGGCAAGAGGTTGATTTTAATCGCTTTCGTTctttttccatctctctttcccgctctcttttctctctccagctctctctccctcacgcttctgtcaccatctc

Function

NR:

description
tudor domain-containing protein 7A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954347.1 False 1735 mRNA 0.52 3 17146217 17148556
XR_005037664.1 True 2092 mRNA 0.51 4 17146217 17151611
Loading

Neighbor

gene id symbol gene type direction distance location
stra6l LOC106609881 coding upstream 6998 17115249 ~ 17139219 (+)
LOC110498663 LOC106609880 coding upstream 62533 17043171 ~ 17083684 (+)
LOC118941347 NA coding upstream 108397 17014236 ~ 17037820 (+)
LOC118941345 LOC106602534 coding upstream 328099 16728206 ~ 16818118 (+)
LOC110498500 LOC106602480 coding upstream 739659 16401695 ~ 16406558 (+)
LOC110497420 LOC106609884 coding downstream 5628 17157239 ~ 17174227 (+)
LOC110498664 LOC106609886 coding downstream 43583 17195194 ~ 17236533 (+)
LOC110497423 LOC106609889 coding downstream 116462 17268073 ~ 17275111 (+)
LOC110497424 sias coding downstream 126106 17277717 ~ 17282045 (+)
LOC118941459 NA coding downstream 131245 17282856 ~ 17291336 (+)
G1595093 NA non-coding upstream 28527 17117388 ~ 17117690 (+)
G1595127 LOC106597479 non-coding upstream 55584 17088547 ~ 17090633 (+)
G1595126 NA non-coding upstream 58593 17086890 ~ 17087624 (+)
G1595101 NA non-coding upstream 118834 17019355 ~ 17027383 (+)
G1595041 NA non-coding upstream 225287 16919705 ~ 16920930 (+)
G1595159 cplx1 non-coding downstream 24201 17175812 ~ 17186945 (+)
G1595208 NA non-coding downstream 87198 17238809 ~ 17239034 (+)
G1595209 NA non-coding downstream 87636 17239247 ~ 17239452 (+)
G1595211 NA non-coding downstream 89031 17240642 ~ 17240853 (+)
G1595213 NA non-coding downstream 90743 17242354 ~ 17242581 (+)
G1594955 NA other upstream 372508 16765543 ~ 16773709 (+)
G1594895 NA other upstream 468095 16675609 ~ 16678122 (+)
G1594737 LOC106610136 other upstream 709850 16434453 ~ 16436367 (+)
G1594292 LOC106610101 other upstream 862014 16279290 ~ 16284203 (+)
LOC110498487 zn271 other upstream 912172 16219935 ~ 16238389 (+)
pold4 pold4 other downstream 469807 17621396 ~ 17623478 (+)
G1597295 NA other downstream 856112 18007723 ~ 18018250 (+)
G1597342 LOC106609914 other downstream 891800 18043411 ~ 18104592 (+)
G1598786 NA other downstream 1881274 19032885 ~ 19033176 (+)
LOC110497472 LOC106609985 other downstream 2174817 19326377 ~ 19328349 (+)

Expression

LOC118941458(LOC106602533) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC118941458(LOC106602533) Expression in each Bioproject

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LOC118941458(LOC106602533) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
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Co-expression Network