clta (LOC106609887)


Basic Information

Item Value
gene id clta
gene name LOC106609887
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17244420 ~ 17254764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573523.2
GCACAGTCAATAAAAATTCCTCGTTTCTGACTGGCCCTGCCAGAGTTTCCGCTTTTTCATTGTCTCCTCCCTTATCTCTTGAGCTGATCCACTGATCTACTCCCCCATTAGATACTGTAACGTTATCAATAGCTAGCCACCACCATCAAATAGCTAGATATGGACGATTTTGACATGCTCAGCGCACCACAGGCTGCGGCCGGCAATGGGACGGACGAAGACCCCGCTGCCGCATTCTTGGCCCAGCAAGAAAGCGAGATCGCGGGGATTGAGAATGACGAAGGATTCAGCATCCTGGACAGCGGAGAGGTTCCAACGTCGCTAGACAATAATCTGACAGGCGATGCAAACGATGCAGTGGACGGTGCTGTCAATGGAGACCTTAATgagGAGAGCAATGGCCCGTCTGATGCATACTCCGCCATCTCCAGTGCCGACCGGCTGCAGGCTGAGCCAGAGAGCCTGCGTAAAtggagggaggagcagagagagaggctggaggtCCTAGACGCCAACTCTCGTAAGCAGGAGTCTGAGTGGAAGGACAAGGCCAAGGTAGAGCTGGAGGAGTGGCACACTAGACAGGACGAGCAGCTGGAGAAGACTAAAGTGAATAACAGGGTTCTGGATGAGGATTTCTACAAACAGCCCTTCTCTGACCTGATTGGTTATGTAGCGGCCGAGGAGGCCATGCTGTCGGACATGGACGAGAACAACCCGGGTACCGAGTGGGAGCGCGTGGCGCGCCTCTGCGACTTCAACCCAAAGTCCAGCAAGCAGGCAAAAGATGTGTCCCGAATGCGCTCTGTCCTCATCTCCCTCAAGCAGGCCCCTCTGGTCCGTTAACCCCCGCCCCCCCCCTTCGACTCTATTAGATGTCTCAATTCAGTCCCTACCACTCCCCTTCGCACTAACCATTCATTCAGCGTTTACAGATCTGAAGGCTCTGGATGCGTAAAAGCAGTGTCTTGGTGGAGCTTCCACGATCCACCATGTCGCTTTTCACCTTACAGATCTGTTAACGTTGAGGGGCCAAGGGGAAAGGGGGTGAATTGAGACGGCTGTATCTCTACCCTAACACTCTCTGGACCCAGATTGCAACCAACCTCTCATAGGGCAATGtatcatccccccccccctcttaccCATCTACCTACCTGAGGTCGTCGTTGTTCATGGATTGATATTAttcctctcttccatctccctttccatcatTAAAGAACAAAATAAGTATATACGCATTTATTTTTTCTTTCTATTCTTTTAAGGACCAAAGTCTGTTTTTATTAAGTGTGTTGGAAACCCATTTAGAGCCGGCTTGTGGCATTTATTGTGACTATTTCAATCTATGCATTTTTCCCATTTGAACCACGAATCAAGTACGGTAAAtatctatttgtgtgtgtgtgtaagcatcaaggttggggtcaattccatttaaattccggtcaattcagaaagtacacaattccaaatcaaatttttgctaattgaaaagcattgaagagaatttgaatttcagtgtacttcctgaattgcaACGGAATTACCCCCAAACATCATGTGGTGTATTATGTACTCTATATGTGTGTACCTATGTACATATACAGGCAATATATAAATTGACATTGTGGTTAAGATTTACTGTAGCCCATGTGTTGCTTAATGTGTTCGTTGTCCATCAATTTCAATATCAGTAAAACATGAAACTTTTGTCGTCAA
>XM_021573524.2
GCACAGTCAATAAAAATTCCTCGTTTCTGACTGGCCCTGCCAGAGTTTCCGCTTTTTCATTGTCTCCTCCCTTATCTCTTGAGCTGATCCACTGATCTACTCCCCCATTAGATACTGTAACGTTATCAATAGCTAGCCACCACCATCAAATAGCTAGATATGGACGATTTTGACATGCTCAGCGCACCACAGGCTGCGGCCGGCAATGGGACGGACGAAGACCCCGCTGCCGCATTCTTGGCCCAGCAAGAAAGCGAGATCGCGGGGATTGAGAATGACGAAGGATTCAGCATCCTGGACAGCGGAGAGGTTCCAACGTCGCTAGACAATAATCTGACAGGCGATGCAAACGATGCAGTGGACGGTGCTGTCAATGGAGACCTTAATgagGAGAGCAATGGCCCGTCTGATGCATACTCCGCCATCTCCAGTGCCGACCGGCTGCAGGCTGAGCCAGAGAGCCTGCGTAAAtggagggaggagcagagagagaggctggaggtCCTAGACGCCAACTCTCGTAAGCAGGAGTCTGAGTGGAAGGACAAGGCCAAGGTAGAGCTGGAGGAGTGGCACACTAGACAGGACGAGCAGCTGGAGAAGACTAAAGTGAATAACAGAGCGGCCGAGGAGGCCATGCTGTCGGACATGGACGAGAACAACCCGGGTACCGAGTGGGAGCGCGTGGCGCGCCTCTGCGACTTCAACCCAAAGTCCAGCAAGCAGGCAAAAGATGTGTCCCGAATGCGCTCTGTCCTCATCTCCCTCAAGCAGGCCCCTCTGGTCCGTTAACCCCCGCCCCCCCCCTTCGACTCTATTAGATGTCTCAATTCAGTCCCTACCACTCCCCTTCGCACTAACCATTCATTCAGCGTTTACAGATCTGAAGGCTCTGGATGCGTAAAAGCAGTGTCTTGGTGGAGCTTCCACGATCCACCATGTCGCTTTTCACCTTACAGATCTGTTAACGTTGAGGGGCCAAGGGGAAAGGGGGTGAATTGAGACGGCTGTATCTCTACCCTAACACTCTCTGGACCCAGATTGCAACCAACCTCTCATAGGGCAATGtatcatccccccccccctcttaccCATCTACCTACCTGAGGTCGTCGTTGTTCATGGATTGATATTAttcctctcttccatctccctttccatcatTAAAGAACAAAATAAGTATATACGCATTTATTTTTTCTTTCTATTCTTTTAAGGACCAAAGTCTGTTTTTATTAAGTGTGTTGGAAACCCATTTAGAGCCGGCTTGTGGCATTTATTGTGACTATTTCAATCTATGCATTTTTCCCATTTGAACCACGAATCAAGTACGGTAAAtatctatttgtgtgtgtgtgtaagcatcaaggttggggtcaattccatttaaattccggtcaattcagaaagtacacaattccaaatcaaatttttgctaattgaaaagcattgaagagaatttgaatttcagtgtacttcctgaattgcaACGGAATTACCCCCAAACATCATGTGGTGTATTATGTACTCTATATGTGTGTACCTATGTACATATACAGGCAATATATAAATTGACATTGTGGTTAAGATTTACTGTAGCCCATGTGTTGCTTAATGTGTTCGTTGTCCATCAATTTCAATATCAGTAAAACATGAAACTTTTGTCGTCAA
>XM_036954351.1
GCACAGTCAATAAAAATTCCTCGTTTCTGACTGGCCCTGCCAGAGTTTCCGCTTTTTCATTGTCTCCTCCCTTATCTCTTGAGCTGATCCACTGATCTACTCCCCCATTAGATACTGTAACGTTATCAATAGCTAGCCACCACCATCAAATAGCTAGATATGGACGATTTTGACATGCTCAGCGCACCACAGGCTGCGGCCGGCAATGGGACGGACGAAGACCCCGCTGCCGCATTCTTGGCCCAGCAAGAAAGCGAGATCGCGGGGATTGAGAATGACGAAGGATTCAGCATCCTGGACAGCGGAGAGGTTCCAACGTCGCTAGACAATAATCTGACAGGCGATGCAAACGATGCAGTGGACGGTGCTGTCAATGGAGACCTTAATgagGAGAGCAATGGCCCGTCTGATGCATACTCCGCCATCTCCAGTGCCGACCGGCTGCAGGCTGAGCCAGAGAGCCTGCGTAAAtggagggaggagcagagagagaggctggaggtCCTAGACGCCAACTCTCGTAAGCAGGAGTCTGAGTGGAAGGACAAGGCCAAGGTAGAGCTGGAGGAGTGGCACACTAGACAGGACGAGCAGCTGGAGAAGACTAAAGTGAATAACAGGGTTCTGGATGAGGATTTCTACAAACAGCCCTTCTCTGACCTGATTGGTTATGTCACACACATTAACCATCCTTGCTACCGCCTAGACCAAGCGGCCGAGGAGGCCATGCTGTCGGACATGGACGAGAACAACCCGGGTACCGAGTGGGAGCGCGTGGCGCGCCTCTGCGACTTCAACCCAAAGTCCAGCAAGCAGGCAAAAGATGTGTCCCGAATGCGCTCTGTCCTCATCTCCCTCAAGCAGGCCCCTCTGGTCCGTTAACCCCCGCCCCCCCCCTTCGACTCTATTAGATGTCTCAATTCAGTCCCTACCACTCCCCTTCGCACTAACCATTCATTCAGCGTTTACAGATCTGAAGGCTCTGGATGCGTAAAAGCAGTGTCTTGGTGGAGCTTCCACGATCCACCATGTCGCTTTTCACCTTACAGATCTGTTAACGTTGAGGGGCCAAGGGGAAAGGGGGTGAATTGAGACGGCTGTATCTCTACCCTAACACTCTCTGGACCCAGATTGCAACCAACCTCTCATAGGGCAATGtatcatccccccccccctcttaccCATCTACCTACCTGAGGTCGTCGTTGTTCATGGATTGATATTAttcctctcttccatctccctttccatcatTAAAGAACAAAATAAGTATATACGCATTTATTTTTTCTTTCTATTCTTTTAAGGACCAAAGTCTGTTTTTATTAAGTGTGTTGGAAACCCATTTAGAGCCGGCTTGTGGCATTTATTGTGACTATTTCAATCTATGCATTTTTCCCATTTGAACCACGAATCAAGTACGGTAAAtatctatttgtgtgtgtgtgtaagcatcaaggttggggtcaattccatttaaattccggtcaattcagaaagtacacaattccaaatcaaatttttgctaattgaaaagcattgaagagaatttgaatttcagtgtacttcctgaattgcaACGGAATTACCCCCAAACATCATGTGGTGTATTATGTACTCTATATGTGTGTACCTATGTACATATACAGGCAATATATAAATTGACATTGTGGTTAAGATTTACTGTAGCCCATGTGTTGCTTAATGTGTTCGTTGTCCATCAATTTCAATATCAGTAAAACATGAAACTTTTGTCGTCAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04644 CLTA, LCA; clathrin light chain A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573523.2 False 1725 mRNA 0.47 6 17244420 17254764
XM_021573524.2 False 1671 mRNA 0.47 5 17244420 17254764
XM_036954351.1 True 1761 mRNA 0.47 7 17244420 17254764
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497421 cplx1 coding downstream 57281 17175808 ~ 17187139 (-)
LOC110497419 LOC106602599 coding downstream 127675 17107788 ~ 17116745 (-)
LOC118936405 NA coding downstream 136692 17105468 ~ 17107728 (-)
LOC110497417 LOC106602598 coding downstream 148549 17087490 ~ 17095871 (-)
LOC110498489 LOC106610080 coding downstream 230079 17001904 ~ 17014341 (-)
LOC110497426 LOC106576595 coding upstream 34316 17289080 ~ 17305024 (-)
LOC110497427 LOC106602593 coding upstream 54650 17309414 ~ 17326408 (-)
LOC110498555 LOC106609917 coding upstream 105174 17359938 ~ 17366305 (-)
LOC110497429 LOC106609892 coding upstream 115050 17369814 ~ 17378794 (-)
LOC110497430 LOC106602587 coding upstream 129211 17383975 ~ 17398168 (-)
G1596854 NA non-coding downstream 5656 17238258 ~ 17238764 (-)
G1596853 LOC106602595 non-coding downstream 6486 17235401 ~ 17237934 (-)
G1596793 NA non-coding downstream 92312 17151897 ~ 17152108 (-)
G1596785 NA non-coding downstream 103234 17140899 ~ 17141186 (-)
G1596784 NA non-coding downstream 103554 17140449 ~ 17140866 (-)
G1596866 NA non-coding upstream 11728 17266492 ~ 17266700 (-)
G1596872 LOC106609889 non-coding upstream 15159 17269923 ~ 17270222 (-)
G1596869 NA non-coding upstream 19704 17274468 ~ 17282043 (-)
G1596876 NA non-coding upstream 27787 17282551 ~ 17283358 (-)
G1596877 NA non-coding upstream 28678 17283442 ~ 17283748 (-)
G1596856 LOC106613263 other downstream 1397 17242606 ~ 17243023 (-)
LOC110498506 LOC106609878 other downstream 312970 16924529 ~ 16931521 (-)
LOC110498466 LOC106606466 other downstream 656253 16523595 ~ 16588239 (-)
LOC110498461 LOC106610045 other downstream 803448 15669157 ~ 16441067 (-)
G1596503 LOC106610088 other downstream 840947 16402831 ~ 16403473 (-)
G1596879 NA other upstream 31766 17286530 ~ 17288017 (-)
G1596940 NA other upstream 182900 17437664 ~ 17437878 (-)
G1596970 LOC106609899 other upstream 239905 17494669 ~ 17530745 (-)
LOC110497446 NA other upstream 361198 17615897 ~ 17623476 (-)
G1598418 NA other upstream 1508951 18763715 ~ 18764422 (-)

Expression

clta(LOC106609887) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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clta(LOC106609887) Expression in each Bioproject

Bar chart with 21 bars.
clta(LOC106609887) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
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Co-expression Network