LOC110498667 (LOC106609920)


Basic Information

Item Value
gene id LOC110498667
gene name LOC106609920
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17579441 ~ 17600354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954369.1
agggggtaaagagagagatggagaaagcgGGAGGGAGAGTGTAAGGATGTTTACCATTTCACTACTTCAGCAGCGACATTGAGGTCCGTTATTTGGACCTTTTTGAAAGAAGCGAAGAATAGGATCAGGTTGCTTTTTTGGAACAAATAGCAGTGTTTTAGTATGTATGGAAACCAACACATCTTGAGATTTGTCTTTTGTTTTGGGGGGTCAGCTaagtcacacacactgtacacactctCCGAAGAGGCATTCTGTGGATTGTTGGCTGTGACACGTTGAATTTATTGGGTGTTGCGGGTTGCCTCAACGCCAGGATGTGGACGTGTATCACGGACTTCTTCACCTATGAGACCACCAAGTCGGTGGTGGTGAAGAGCTGGACCATCGGGATCATCAACCGCGTCGTACAGCTCCTCATCATCACCTACTTCATCGGGTGGGTGTTTGTGCATGAGAAGGCGTACCAGATCAGAGACACGGCTATAGAGTCGTCTGTCATGACCAAAGTCAAAGGCTTTGGACTGTACAACAACCGAGTCATGGACGTAGCTGAGTACGTCACCCCCTCTCAGggGGCCTCTGTGTTCTGCATCATCACTAAATTCATCACCACAGAGAACCAGGTGCAGGGATACTGTCCCGAAAGTGAGATGAAATACAAGTGTACGCACGACAACAACTGCACTAGGTTCCTCAACAAGcctggaggaaatgGTCTTCCAACGGGCAGGTGTGTACATTTCAACGACACCCTCAACACCTGTGAGATCAGAGGCTGGTGCCCCGCGGAGATCGACTACATCAAGACGCATCCTATGATGGAGGTGGAGAACTTTACCATCTTCATCAAGAACAGCATCCGTTTCCCCCTCTTCAACTTCACCAaGGGTAACTTCCTGCCCACCATCACCCCTCAGTACATCAAGGCGTGTAACTTTGACCATGAGAACAACACCTACTGTCCCATCTTCAGGGTGGGGGATGTCATCCGCTATGCACACCAGAACTTCACCACGCTGGCACAGAAGGGAGGGGTGATAGGTATAAAGATTGGCTGGATGTGTGACCTGGACCAGTCAGAGGATGAGTGTAACCCTTCCTACTCCTTCACGCGGCTGGACGCCATGTCGGAGAAGAACAGCGTCTCCCCCGGGTACAACTTCAGGTATGCTAAGTACTACAAGATGGACAATGGGACAGATTACCGTACTCTGCTGAAGGCCTATGCCATCAGGTTTGATGTGCTTGTCAATGGAAATGCAGGGAAGTTTAACATGATCCCGACTCTGATCAACATGGTAGCTGCCTTTACGTCAGTTGGAGTGGGCACCGTGCTTTGTGACATCATACTCTTGAACTTTCTGAAGGGAGCAGAGCAATACAAGGCCAAGAAGTTTGAGGAGGTATCAGACACGCAGATCGAGAACTCCTTATCCAGCAATGGGCTCTATCGGAGTAGGGAGTTCATTGGAGTAGAGAAACAGTCAAACGACTCAGGGGCCTTTTCCATTGGGCAATACGGCTAACAGACAGCCAATGGAATGGAGTGTTTGAGGGGAAAGGGGTTGGGTGGTGGCAATTTGGGACGTTTGTAGGTTTAGGGTGATATTGCCCATAGACCCTAATCTTGGATCAGTTTAACATTTCCCCCACAAATGGTTATGGTGAGGATTGGGGAaggggaaactgatcctagatcagagaaTGCATATATGTATGGCATTGTAATATCCCTAATATTTCACATGAACCTGTAATTTACCTGTAATATTGTCATGGTGGAGGTTGTATGTGTAATCCTTAACTTTGCATGTGACCCTGCATGTGACCCACCATGGGCTATCGTATTTGAACTCCTacctctacaaagtattaaagTCTACCCACAACTTCAATAAAATTATATCACTTAAATTTGGTTCTGCTTG

Function

NR:

description
PREDICTED: P2X purinoceptor 3-like isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0035590 purinergic nucleotide receptor signaling pathway biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004931 extracellularly ATP-gated cation channel activity molecular_function
GO:0001614 purinergic nucleotide receptor activity molecular_function

KEGG:

id description
K05217 P2RX3; P2X purinoceptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954369.1 True 1931 mRNA 0.48 12 17579441 17600354

Neighbor

gene id symbol gene type direction distance location
LOC110497443 LOC106609902 coding downstream 24491 17547793 ~ 17554950 (-)
LOC110497442 LOC106609865 coding downstream 42280 17533072 ~ 17537161 (-)
LOC110497441 NA coding downstream 47776 17522938 ~ 17531665 (-)
LOC110497439 LOC105022884 coding downstream 61086 17510213 ~ 17518355 (-)
LOC118941460 NA coding downstream 70978 17506457 ~ 17508463 (-)
LOC110497445 LOC106602577 coding upstream 4718 17605072 ~ 17613102 (-)
LOC110497446 NA coding upstream 15543 17615897 ~ 17623476 (-)
LOC118941549 NA coding upstream 96002 17696356 ~ 17696542 (-)
zdhhc5a LOC106609866 coding upstream 149870 17750224 ~ 17791565 (-)
LOC110497450 LOC106592462 coding upstream 248488 17848842 ~ 17851818 (-)
G1597080 NA non-coding downstream 6125 17572789 ~ 17573316 (-)
G1597077 NA non-coding downstream 6772 17572371 ~ 17572669 (-)
G1597068 NA non-coding downstream 21017 17558182 ~ 17558424 (-)
G1596992 NA non-coding downstream 35145 17544054 ~ 17544296 (-)
G1597137 NA non-coding upstream 86196 17686550 ~ 17686840 (-)
G1597144 NA non-coding upstream 92874 17693228 ~ 17693793 (-)
G1597387 NA non-coding upstream 135809 17736163 ~ 17736367 (-)
G1597388 NA non-coding upstream 137034 17737388 ~ 17737715 (-)
G1596970 LOC106609899 other downstream 79998 17494669 ~ 17530745 (-)
G1596940 NA other downstream 141563 17437664 ~ 17437878 (-)
G1596879 NA other downstream 291424 17286530 ~ 17288017 (-)
G1596856 LOC106613263 other downstream 336418 17242606 ~ 17243023 (-)
LOC110498506 LOC106609878 other downstream 647991 16924529 ~ 16931521 (-)
G1598418 NA other upstream 1163361 18763715 ~ 18764422 (-)
G1599097 LOC106609944 other upstream 1608938 19209292 ~ 19209964 (-)
G1599197 NA other upstream 1771955 19372309 ~ 19381751 (-)
G1599717 NA other upstream 1955243 19555597 ~ 19557357 (-)

Expression


Co-expression Network