Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497447 |
| gene name | LOC106609905 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 17625425 ~ 17644614 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like |
| id | name | namespace |
|---|---|---|
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005388 | calcium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| K05853 | ATP2A; P-type Ca2+ transporter type 2A |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036954371.1 | False | 5491 | mRNA | 0.51 | 23 | 17625425 | 17644614 |
| XM_036954370.1 | True | 5807 | mRNA | 0.50 | 23 | 17625624 | 17644614 |
17,608,000
17,612,000
17,616,000
17,620,000
17,624,000
17,628,000
17,632,000
17,636,000
17,640,000
17,644,000
17,648,000
NC_048583.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pold4 | pold4 | coding | upstream | 1947 | 17621396 ~ 17623478 (+) |
| LOC118941461 | NA | coding | upstream | 46666 | 17573411 ~ 17578759 (+) |
| si:dkey-9i23.6 | NA | coding | upstream | 52095 | 17565497 ~ 17573330 (+) |
| LOC110497434 | LOC106609897 | coding | upstream | 151625 | 17453701 ~ 17473800 (+) |
| LOC110497435 | LOC106602585 | coding | upstream | 171851 | 17440996 ~ 17453574 (+) |
| LOC110498668 | LOC106609907 | coding | downstream | 495 | 17645109 ~ 17681920 (+) |
| LOC110497448 | LOC106609908 | coding | downstream | 95820 | 17740434 ~ 17749766 (+) |
| LOC110497449 | LOC106609909 | coding | downstream | 162301 | 17806915 ~ 17843760 (+) |
| LOC110497453 | lrat | coding | downstream | 289702 | 17934316 ~ 17936334 (+) |
| LOC110497454 | LOC106609867 | coding | downstream | 292388 | 17937002 ~ 17941545 (+) |
| G1595369 | LOC106609902 | non-coding | upstream | 70167 | 17547801 ~ 17555258 (+) |
| G1595370 | NA | non-coding | upstream | 78068 | 17546834 ~ 17547357 (+) |
| G1595363 | NA | non-coding | upstream | 87609 | 17537596 ~ 17537816 (+) |
| G1595350 | NA | non-coding | upstream | 103316 | 17519383 ~ 17522109 (+) |
| G1597210 | NA | non-coding | downstream | 153909 | 17798523 ~ 17798801 (+) |
| G1597213 | NA | non-coding | downstream | 156686 | 17801300 ~ 17801534 (+) |
| G1597214 | NA | non-coding | downstream | 157284 | 17801898 ~ 17802156 (+) |
| G1597215 | NA | non-coding | downstream | 157951 | 17802565 ~ 17802787 (+) |
| G1597241 | NA | non-coding | downstream | 199393 | 17844007 ~ 17844295 (+) |
| G1594955 | NA | other | upstream | 851716 | 16765543 ~ 16773709 (+) |
| G1594895 | NA | other | upstream | 947303 | 16675609 ~ 16678122 (+) |
| G1594737 | LOC106610136 | other | upstream | 1189058 | 16434453 ~ 16436367 (+) |
| G1594292 | LOC106610101 | other | upstream | 1341222 | 16279290 ~ 16284203 (+) |
| G1597295 | NA | other | downstream | 363109 | 18007723 ~ 18018250 (+) |
| G1597342 | LOC106609914 | other | downstream | 398797 | 18043411 ~ 18104592 (+) |
| G1598786 | NA | other | downstream | 1388271 | 19032885 ~ 19033176 (+) |
| LOC110497472 | LOC106609985 | other | downstream | 1681814 | 19326377 ~ 19328349 (+) |
| G1598960 | NA | other | downstream | 1687127 | 19331741 ~ 19332220 (+) |
