LOC110498668 (LOC106609907)


Basic Information

Item Value
gene id LOC110498668
gene name LOC106609907
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17645109 ~ 17681920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954372.1
TGACGAGGAACTAACCGAATGGAAAGTGAAGTTTCACAAGACCCACAGTAACTGACTGTAACGTGTTATAGCAACACATGAACAGTTTAAGTCCCGCTTTTTTTTCCCACTAAAGACGGGAAATAAACCATTTACCGTAGATATCGATTCTTTCAGGGATTATCCTCTGAAagcAGCGATGGCTCCTTCTCTGGCCCAGGCCTACCGTAGGCGGTGGTGGATGGCGGTGACTGCGGTCATAGAGAACCTGCTGTTCTCTGCTGTGCTGCTGGGCTGGGGATCGCTACTCATCATGCTCAAGAACGAGGGCTTCTACTCACACCTCTGCATAGACAACGAGACAGTGTTCAGTAACATCAGTTCGTGGGACAGTGGTATCTGGCATAGCTGCGTGGACCAGGAAGAGATGTTGAATCTGGGCTTTACCATTGGCTCCTTCCTGCTGAGTGCAGCCACTCTGCCGCTAGGTATCCTGATGGACAAGTACGGGCCCCGCCCGCTCCGCCTCCTTGGCAGtgCGTGTTTTGCTTTCTCTTGTGCCATGATAGCTGGAGCTGCCTATAACCCAGAAGTACTCTCGGCCCTCATTTTCATCGCAGTCTCCTTCAACGGCTTCGGAGGAATTTGCCTCACCTTCACCTCCCTCacgttGCCCAACATGTTTGGGAACGTGCGCTCCACTATCCTGTCTCTAATGATCGGCTCCTACGCCTCTTCAGCCGTCACCTTCCCTGGAGTCAAGCTGATCTATGATCTAGGTGTGTCCTTCAGGGTGATCATGTGGGTGTGGTCGGGGCTAGCCGGTCTCGTCTTCCTCAACTGCTTCCTCAATTGGCCGGGGGAGTCTTTCCCCGCACCGGAGGACATCAGCTACACTAAGGAGGTGAAGCTGAGTGGCATGGTGATGGATGACAAGGTGACGGGGGACAGATTCTACAGTCATGTGACCACGGTGGAAGAGAAGATGGCTGCGAAGCAGCAGGAACCAGATCCCTCGTCAGAGCAGCTCCCAACTGGAGAACAGACACAGGGTGGCCCTCCTTTCCGTAGTTCAGTCTGCTCGCCCATCTTCCTGTGGAGTCTCATCACCATGGCGATGACCCAGCTACGCATCATCTTCTTTATGGGCGCCATGAACAAGATGCTGGAGTTCCTGGTTACCCACGGCGACCCACACCCTTCTAAGGAGCTATTGATGGAGGCAGAGCAACAAGTGGGTTTCTACTCGTCAGTGTTTGGCTCTCTGCAGCTGCTCTGCCTGCTCACCTGTCCTCTGATTGGCTACATCATGGACTGGAGGATGAAGGAGTGCGACGTAGACCAGagCCAACCTGAACCCCCGAAGAGAGACAGGAAGATCCAGAAACTGACAAACGCCATCCGTGCTTTCATCATCACCAACGTTCTACTGGTCACCTTCGGAGTCATCCAGATGATAGACAACCTGCCTGTACAGATAATTTCCTTCATCGTCCACACCATGGTCAGGGGTTTCGTCCACTCCTGTGCCGGAGGACTCTATGCTGCCGTATATCCGTCCAATCACTTTGGGACATTGACGGGGATGCAGTCGATGATCAGCGCGCTATTCGCTCTCCTCCAGCAGCCTCTCTTTGTCATCATGGTGGGACACCTGGGAGGAGACCCCTACTGGATCAACCTGAGCCTGCTCATTGCCTCATTGGCTGGATTCCTGTTGCCCGGATACCTGATCTATCACCGTAGGAACCTGATGCgagagaaggtggaggagtgTGAGAGGGAGGCCGCTAACcaatcagaaagagagagacaaacctTACGGCAACCAGAAAATGGCCATACCAAAAACCATACTAATGGACATCTCAGCAATTAAGCTTAAGAATCTTGACCAAACTAACTGTCAAATATCATAGTCGTTAATTGTAAAATATCATTATAGACCATCGTCATGACGATGACAAATTATGGTTGTCATTTTCGACAAGGACAGTGATGACGATATTGTGCACGGGAGTTTGGACATGTCGCCCTTAAGCCTTTTTTAATTTGACATCAAAATACACACTCAATATACTCATTTTGTTTTAGGTATGACATGCCAAAGAAATCCTAAAATATGCTATCTTTATTTTAGTTAAAAACATAATTTCATGCCTAAACGTGAAATAGAAAATCTCAATGGAAATTGAGTTTCGGCAATTCAATAATTAAGCAATAATATTTAAGCTGACCAAAAATTCCATGAAGGTTATTGGTACCATTTCAGGTCACCCTTCCACCAACCAGAAGCACAGCTCTCAGTATTCTGTAGTAGACAGGAAGTGGATTTATTTCGCTATCAGATTGGCTGGTGTAACATTGAACTACCTCCCCCACCCAACTCTCACCAAACCACAGTCACTTCATTAATTTAGGCCTAGCAGCCAGTCTGGTAGTATTATTTTATTGGTCATTGTTTGTTGGTCTTTGTCTTTTCCGGTTCACTCCCTGTATCTATACTAGTCCTTATTGTGTCTTTACATCTAGCGGAGAATACAGATTAGGAGGAGACATGGTGGAGAAGGTGAACCGCAGTTTCCCCGTACATGTGCCCAGACCACCAGCCCATGGGGCCTGCACATCCCTATTAATTTGACTATCAATCTGCACCTGCAATCTTTCCCTGTGTCCCCTTCTTTATCTCCATGTCAGACCTGTCATTGTAAGTCCACTAAGTACTATGCCCATTTGGTCAAGTCTGCGGCtatgtccgaaatggcaccctattccctatatagtgcactacttttgaccagagcccatgggGTACAATTTCAGACACACCCTGGGTCACTACCTCTATTTCCCTGTGTTCATCCCAGAGTTACTATTTAAATGACTCCGTGCATCACAATGTGTCCACCTGAAATGTgtgttcgtcccaaatggcaccctattccctattatgtgcactacttttgaccagggctcatagggtctGTTTGTTTGGTCAGACTTCGATGGTCCCTCTGTTTTTGCGTTATTTGATCTTTAGGTTCTGCGTCCCAATTGAACTATGATAAAATTGCAACGTGAAATGTCTGTGTAGTTCAAGAGAAATGCCAATCAGTACCCATCACCGAAACCTTTTAAGGTGAGCTGTTACAAAGGAGCTCTTACAGAGAGCTGTAGATTAGTTTAAAAGAAAAGTATTTATATAAATGTGGGCAAGAAAGAGCACTTGTCAGAAGCTGATTCAATCTGGTCAAACAGCCCACCAACCGACCATCTTGAAATGTTAAACCGTGTTTACAGTTAACAGTACTGTACAAGATAATATAGATGTACAGATGTGTTGCTCAAATCAACTCCAAAAGCTGGTTGAATCTGATCAACCAACCGTCTTCGGTATTCAAAAACAATAAATGATTTACAGCTGACAGCCCTCTATGAGGTCACGTAAAACAGTATTTTACAGTTCATagtattgtatttggtcaaataaAAGTGTTGCTAGTTAACAGTACTGTATGAGGTCAAATATAACAAACAGTATTACTAGTTAACAGTAATGTATGAGGTAAGGTGGATGCACCTGAACCCCGATATCACTGTCCCCATGACAACGACAGTAGAACCACCTCATTGGAGCAGGGCTTCATTTAGCAGGTGCATTGGAGCTACTAGGCTATTTATTTAGTGTGCATCCCACTAAATCCCGCTGTAGGGTatggggtgccatttgtgatggaGACCGCGTGTGTGACTTAGTAGCGCTTGAATCTGAAAGAGAATactgtaatgtatgtatgtaatgatatgtaaTAAATTGAATGTGTGTAATAAATTGAATGTATGTAATAAATTGAATGTGTGTGCTTTATTGTAAGTGCCTGGGGAGCAAGTATTTTTGtggtagcctggtctcagatctgtttgtgctttccCCAACTCTATTGCAAGACAAACATGGCATGTTTGAAAAGGAGTTGACACGAttgcacaaacagactggcactctgGCTACTTTTGTGCCATGTAATGGTA

Function

NR:

description
large neutral amino acids transporter small subunit 3-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08228 SLC43A1; MFS transporter, LAT3 family, solute carrier family 43, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954372.1 True 4011 mRNA 0.46 15 17645109 17681920
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497447 LOC106609905 coding upstream 495 17625425 ~ 17644614 (+)
pold4 pold4 coding upstream 21631 17621396 ~ 17623478 (+)
LOC118941461 NA coding upstream 66350 17573411 ~ 17578759 (+)
si:dkey-9i23.6 NA coding upstream 71779 17565497 ~ 17573330 (+)
LOC110497434 LOC106609897 coding upstream 171309 17453701 ~ 17473800 (+)
LOC110497448 LOC106609908 coding downstream 58514 17740434 ~ 17749766 (+)
LOC110497449 LOC106609909 coding downstream 124995 17806915 ~ 17843760 (+)
LOC110497453 lrat coding downstream 252396 17934316 ~ 17936334 (+)
LOC110497454 LOC106609867 coding downstream 255082 17937002 ~ 17941545 (+)
LOC110498558 LOC106609924 coding downstream 274587 17956507 ~ 17962121 (+)
G1595369 LOC106609902 non-coding upstream 89851 17547801 ~ 17555258 (+)
G1595370 NA non-coding upstream 97752 17546834 ~ 17547357 (+)
G1595363 NA non-coding upstream 107293 17537596 ~ 17537816 (+)
G1595350 NA non-coding upstream 123000 17519383 ~ 17522109 (+)
G1597210 NA non-coding downstream 116603 17798523 ~ 17798801 (+)
G1597213 NA non-coding downstream 119380 17801300 ~ 17801534 (+)
G1597214 NA non-coding downstream 119978 17801898 ~ 17802156 (+)
G1597215 NA non-coding downstream 120645 17802565 ~ 17802787 (+)
G1597241 NA non-coding downstream 162087 17844007 ~ 17844295 (+)
G1594955 NA other upstream 871400 16765543 ~ 16773709 (+)
G1594895 NA other upstream 966987 16675609 ~ 16678122 (+)
G1594737 LOC106610136 other upstream 1208742 16434453 ~ 16436367 (+)
G1594292 LOC106610101 other upstream 1360906 16279290 ~ 16284203 (+)
G1597295 NA other downstream 325803 18007723 ~ 18018250 (+)
G1597342 LOC106609914 other downstream 361491 18043411 ~ 18104592 (+)
G1598786 NA other downstream 1350965 19032885 ~ 19033176 (+)
LOC110497472 LOC106609985 other downstream 1644508 19326377 ~ 19328349 (+)
G1598960 NA other downstream 1649821 19331741 ~ 19332220 (+)

Expression

LOC110498668(LOC106609907) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110498668(LOC106609907) Expression in each Bioproject

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LOC110498668(LOC106609907) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network