LOC110497450 (LOC106592462)


Basic Information

Item Value
gene id LOC110497450
gene name LOC106592462
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17848842 ~ 17851818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573556.2
GAAACTATCAAGAGCTGACTCTTTCCAGGAAATCATTTATAGTTCCGCCTTCTTTCTAGATATGGCTTCCTCCAGCAGTCTCCTGTCTGAAGAGCAGTTTCTGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCTCCACTTCGTGTGGACACAACTTCTGCATGGCCTGTATAACAAAGTACTGGGATAGCAGCGACCTGTGTCAATGTCCACTGTGTCAGGAGAAATTCTCCAGGCAACCTAAGCTTCGTGTCAACACAACCTTCAGAGAGATTATAGAGAATCATAAATTGTTGAGAGACACAGGTAAAGATGAGTCCCCTGCCAAACCTGGAAAAGTGCACTGTGACGTCTGCACTGGGACGAAGCGCAAGGCCCTGAAGTCATGCCAGGTGTGTCTGGCATCTTACTGTAAGACTCACCTGGAGCCTCATCAAATATCCCCAGCATTCAAGAGACACAAGCTGATCGACCCTGTGGAGGACCTGGAAGACAGGATCTGTAAGAAGCACGACAGACTCCTGGAGCTGTTCTGTAGGACTGACcagacgtgtgtgtgtcagttctgCACTGAAACAGACCACAAGACTCATGACACTGTTCCTATAGAGGACGAGTGTGGAGAGAGGAAGGCTCAGCTGGGGAAAACTGAGGCAGAAGTGCAGAGGATTATCCAGGAGCTACTGCAGAAAGTTAAAGAGATTAAACTCTCAGTACATCTCAGCAAAAGAGATGCAAAGAGGGAGATAGCAGACAGCATAAAGGTCTTCACTGCTCTGGTGCGCTCCATTGAGAAAGGCCAAGCTCGGCTCATTGAGGAggttgaggagaagcagaaagcagTAGAGAGGCAGGCTGAAGGGCTCATTAAAGAACTAGAGCAGGAAATCACTGAGCTAAAGAGGAGAAGCACTGAGCTGAAGCAGCTCTCACACACTGAGGACCACCTCCAACTTCTCCAGAGCTTCACATCCGTGGTGTGCACCCCTCCACCCACCAAggactggtctgagatcagtgtTCACAGGGCTGTGAGGAGAGCTGTGTCTCAGCTGGAGGAGACATtgaataaagagatggagaagctGCCTGAGGTCAAACTGAAGAGGATTCAGCAGTATGCAGTGGATGTGACACTGGACCCTGATACAGCAAATCTCTTTCTCATCCTGTCTGACAATGGGAAACAAGTGAGAACTGGAGACACGGAACTGAATCTTCCGGACAATCCAAAAAGGTTTGATCGTTTTATCGTTCTCCTTGGAAAGGATGGCTTCTCCTCAGGGAGATTTTACTATGAGGTGACGGTTAAGGGTAAGACTAGGTGGGATTTAGGAGTTGCCAGAGAGTCCACTGACAGGAAGGGGGATATCACACTGAGCCCTGAACATGGAGTTTGGACTATGATGCTAAGGGATGGGAATGAGTACACAGCCTGTGCCTCACCGCAAGTCCGTCTCTCCCTGAGCGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTGTGGTCTCTTTTTataatgtggaggccaggtctcaTATCTACTCTTTCACTTGCTGCATCTTTACAGAGAAAATCTACCCATTCTTCAGTCCCtgtagtgatgatagtggtaaaAACGCAGCTCCTCTCGTCATCTCTCCTGTCAATCACAAATACTGATTAAACAAAGGACTTAATCTttctttaaagctgcaatatgtaactttttgggcgacccgaccaaattcacaaagaaatgtgagttatagatctgtcattctcattcaAAGCAAGTATAAAAAGCGGTAGATCTGTTGTATGTGcattatttctatgcttcccgttatTACATTTCATTTTGGCATCTTTTACTTTCAGGTTTTGTACACCACctccaaacagctgaaaatacaatattttgggatgtggaaaatatatttcacagcggtttagatggtacaatgattctcaacACTATACTTGCTTTTTTTGGGTcaaaaactgaaattaggcgaactattagaattttagcaagcAGGAAACGGCAGAGTGATTTCTTTATTGTGCATCTTTAAGCTGGTTGTTGATACTGTATACGTGAAAGTGATAAAGGACTTACTTTTCCTTTGATCTGGTTGTGGATGTAGGTTATTGTGAAAAAGGACTTTAAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTAAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTAAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTCCACAGTACTGTACTTCGATAAAGGGCATACTTTTCCTTGGAGCTGGCTGTGGATCTAAGACAGTGTGTGATAAGGGAAATAATGTGCCTATAAGCTGGTTGTTGGTTTAGGAAAGTGACTGAAAAGTGACTGAATATGATAAAATACATACTTTTCTTTTGAGCTgatggtacagtgccttcagaaagtactcataccccttgacttattccagatgttgttgtgttacagcacaaactcaaaatatatat

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573556.2 True 2977 mRNA 0.44 1 17848842 17851818

Neighbor

gene id symbol gene type direction distance location
zdhhc5a LOC106609866 coding downstream 57277 17750224 ~ 17791565 (-)
LOC118941549 NA coding downstream 152300 17696356 ~ 17696542 (-)
LOC110497446 NA coding downstream 227456 17615897 ~ 17623476 (-)
LOC110497445 LOC106602577 coding downstream 235740 17605072 ~ 17613102 (-)
LOC110498667 LOC106609920 coding downstream 248488 17579441 ~ 17600354 (-)
LOC110498557 LOC106609922 coding upstream 21817 17873635 ~ 17875393 (-)
LOC110497451 LOC106609911 coding upstream 40823 17892641 ~ 17903484 (-)
LOC110497452 LOC106602564 coding upstream 61105 17912923 ~ 17920708 (-)
LOC110498559 LOC106602637 coding upstream 119913 17971731 ~ 17976721 (-)
LOC110497455 pdli3 coding upstream 128238 17980056 ~ 18005750 (-)
G1597426 LOC106609909 non-coding downstream 21769 17824231 ~ 17827073 (-)
G1597408 NA non-coding downstream 49640 17798971 ~ 17799202 (-)
G1597397 NA non-coding downstream 90441 17758089 ~ 17758401 (-)
G1597392 NA non-coding downstream 99089 17748213 ~ 17749753 (-)
G1597450 NA non-coding upstream 6457 17858275 ~ 17869467 (-)
G1597538 NA non-coding upstream 154986 18006804 ~ 18007008 (-)
G1597610 NA non-coding upstream 266027 18117845 ~ 18118182 (-)
G1597629 NA non-coding upstream 283836 18135654 ~ 18135888 (-)
G1597632 NA non-coding upstream 285881 18137699 ~ 18137917 (-)
G1596970 LOC106609899 other downstream 349399 17494669 ~ 17530745 (-)
G1596940 NA other downstream 410964 17437664 ~ 17437878 (-)
G1596879 NA other downstream 560825 17286530 ~ 17288017 (-)
G1596856 LOC106613263 other downstream 605819 17242606 ~ 17243023 (-)
G1598418 NA other upstream 911897 18763715 ~ 18764422 (-)
G1599097 LOC106609944 other upstream 1357474 19209292 ~ 19209964 (-)
G1599197 NA other upstream 1520491 19372309 ~ 19381751 (-)
G1599717 NA other upstream 1703779 19555597 ~ 19557357 (-)
G1599760 LOC106609957 other upstream 1784200 19636018 ~ 19637027 (-)

Expression


Co-expression Network