LOC110498557 (LOC106609922)


Basic Information

Item Value
gene id LOC110498557
gene name LOC106609922
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17873635 ~ 17875393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575219.2
ATGGCTTCCTCCAGCAGTCTCCTGTCTGAAGAGCAGTTCCTGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCTCCACTTCATGTGGACACAACTTCTGCATGGCCTGTGTCACAAAGTACTGGAATGGCAAGAACATGTGTCAATGTCCACTGTGTCAGGAGACATTCTCGAGACGACCTAAGCTTCACATCAACGCAACCTTCAGAGAAGTTGTAGAGAATTTTAAAAAGACGAGAGACAGACGTAAAGATGGGTCCCCTTCCAACCCGGAAATAGTTCCCTGTGACGTCTGTACTGGGATGAAGCACAAAGCCCTGAAGTCCTGCCTGGTGTGTCAGAcctcttactgtgagactcacctTGAGCCTCATCAGATAGCCTTACCATTAAAGAGACACAAACTGATCGACCCTGTGGTGAACCTGGAAGACAGGATCTGTAAGAAGCACGACAGACTCCTGGAGCTGTTCTGTAGGACTGACCAGACATGTGTGTGTCAGTTCTGCACTGAAACAGACCACAAGACTCATGACACTGTTCCTATAGAGGAAGAGTCTGAGGAGAGGAAGGTTCAGCTGGGGAAAACTGAGGCAGAAGTACAGCTGATTATCCAGGGGCGACTGAAGAAGGTTAAAGATATCAAATTCTCAGTAGATCTCAgcaagagagatgcagagagagagatagcagacaGCATAAAGGTCTTCACTGCTCTGGTGCGATCCATTGAGAAAAGCCAGGCGGAGCTCATTGAGGTGATTGAGGAGAGGCAGAAAGCGGTAGAGTGTCAGGCTGAAGGGCTCATTAAAGAACTGGAGCAGGAAATCACTGAGCTAAAGAGGAGAAGCACTGAGCTGAAGCAGCTCTCACACACTGAGGACCACCTCCAACTTCTCCAGAGCTTCTCATCCGTGGTGTGCACCCCTCCACTCACCAAggactggtctgagatcagtgtTCACAGTGATCTCTGTGTGGGGACTGTGAGGAGAGCTGTGTCTCAGCTGGAGGAGACACtgaataaagagatggagaagctGCTTGAAGTCAAACTGAAGAGGATTCGGCAGTATGCAGTAGATGTGACTCTGGACCCCGATACGGCACATCTATATCTCATCATGTCTGAAGATGGAAAACAAGTACGATGTGGAGACACACCACAGAATCGTCCTCCCAATCCAAAAAGGTTTTATCAGTATCCCATTGTCCTTGGAAAGGATGGCTTCTCCTCAGGGAGATTTTACTATGAGGTGACGGTTAAGCGGAAAACTGACTGGGATGTAGGTGTGGCCAGACAGCCCAAAGGCAGGAAGGTTAATATCTCACCTAGCTCTGCGTATAGACTCTGGACTGTGTCTCTGAGGGATGGGAATACTTACAAAGCCTGTACCTTCCCCCCTGTCTTCCTTTCCTTGAGAGAGAAGCCCCAGAAGGTGGGGGTGTTCGTTGACTACGAGGAGGGTCAGGTCTCTTTTTAcgatgtggaggccaggtctcaTATCTACTCTTTCACTGGCTGCACCTTTACAGAGAAACTCTATCCATTCTTCAGCCCCTGTATGAATGCTGGTGGTAAAAACTCAGCCCCACTCATCATTTCTCCtgtcattcacacacactgatTAAACAATGGAGGAACATTTTCATCATAACATAGGTAATCAATGCTTATATTTGCTGAAAAGGCTATCAACTGAAATTGACTTAAAGGTGTAGTTGGTTCAACATATTAAAAAACCCAAATACatg

Function

NR:

description
E3 ubiquitin-protein ligase TRIM21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575219.2 True 1759 mRNA 0.47 1 17873635 17875393

Neighbor

gene id symbol gene type direction distance location
LOC110497450 LOC106592462 coding downstream 21817 17848842 ~ 17851818 (-)
zdhhc5a LOC106609866 coding downstream 82070 17750224 ~ 17791565 (-)
LOC118941549 NA coding downstream 177093 17696356 ~ 17696542 (-)
LOC110497446 NA coding downstream 252249 17615897 ~ 17623476 (-)
LOC110497445 LOC106602577 coding downstream 260533 17605072 ~ 17613102 (-)
LOC110497451 LOC106609911 coding upstream 17248 17892641 ~ 17903484 (-)
LOC110497452 LOC106602564 coding upstream 37530 17912923 ~ 17920708 (-)
LOC110498559 LOC106602637 coding upstream 96338 17971731 ~ 17976721 (-)
LOC110497455 pdli3 coding upstream 104663 17980056 ~ 18005750 (-)
LOC110497456 LOC106609914 coding upstream 132264 18007657 ~ 18094529 (-)
G1597450 NA non-coding downstream 4168 17858275 ~ 17869467 (-)
G1597426 LOC106609909 non-coding downstream 46562 17824231 ~ 17827073 (-)
G1597408 NA non-coding downstream 74433 17798971 ~ 17799202 (-)
G1597397 NA non-coding downstream 115234 17758089 ~ 17758401 (-)
G1597538 NA non-coding upstream 131411 18006804 ~ 18007008 (-)
G1597610 NA non-coding upstream 242452 18117845 ~ 18118182 (-)
G1597629 NA non-coding upstream 260261 18135654 ~ 18135888 (-)
G1597632 NA non-coding upstream 262306 18137699 ~ 18137917 (-)
G1597639 NA non-coding upstream 269254 18144647 ~ 18144964 (-)
G1596970 LOC106609899 other downstream 374192 17494669 ~ 17530745 (-)
G1596940 NA other downstream 435757 17437664 ~ 17437878 (-)
G1596879 NA other downstream 585618 17286530 ~ 17288017 (-)
G1596856 LOC106613263 other downstream 630612 17242606 ~ 17243023 (-)
G1598418 NA other upstream 888322 18763715 ~ 18764422 (-)
G1599097 LOC106609944 other upstream 1333899 19209292 ~ 19209964 (-)
G1599197 NA other upstream 1496916 19372309 ~ 19381751 (-)
G1599717 NA other upstream 1680204 19555597 ~ 19557357 (-)
G1599760 LOC106609957 other upstream 1760625 19636018 ~ 19637027 (-)

Expression


Co-expression Network