Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497453 |
| gene name | lrat |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 17934316 ~ 17936334 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lrat | Enables phosphatidylcholine-retinol O-acyltransferase activity. Involved in retinol metabolic process. Predicted to be located in multivesicular body; perinuclear region of cytoplasm; and rough endoplasmic reticulum. Implicated in Leber congenital amaurosis 14 and retinitis pigmentosa. |
| description |
|---|
| lecithin retinol acyltransferase-like |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016746 | transferase activity, transferring acyl groups | molecular_function |
| id | description |
|---|---|
| K00678 | LRAT; phosphatidylcholine-retinol O-acyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036954375.1 | True | 1403 | mRNA | 0.43 | 2 | 17934316 | 17936334 |
17,931,200
17,931,600
17,932,000
17,932,400
17,932,800
17,933,200
17,933,600
17,934,000
17,934,400
17,934,800
17,935,200
17,935,600
17,936,000
17,936,400
17,936,800
17,937,200
17,937,600
17,938,000
17,938,400
17,938,800
17,939,200
NC_048583.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497449 | LOC106609909 | coding | upstream | 90556 | 17806915 ~ 17843760 (+) |
| LOC110497448 | LOC106609908 | coding | upstream | 184550 | 17740434 ~ 17749766 (+) |
| LOC110498668 | LOC106609907 | coding | upstream | 252396 | 17645109 ~ 17681920 (+) |
| LOC110497447 | LOC106609905 | coding | upstream | 289702 | 17625425 ~ 17644614 (+) |
| pold4 | pold4 | coding | upstream | 310838 | 17621396 ~ 17623478 (+) |
| LOC110497454 | LOC106609867 | coding | downstream | 668 | 17937002 ~ 17941545 (+) |
| LOC110498558 | LOC106609924 | coding | downstream | 20173 | 17956507 ~ 17962121 (+) |
| LOC110497458 | LOC100135888 | coding | downstream | 224763 | 18161097 ~ 18218659 (+) |
| LOC118941462 | NA | coding | downstream | 866393 | 18802727 ~ 18815594 (+) |
| LOC118941552 | NA | coding | downstream | 902218 | 18838552 ~ 18838607 (+) |
| G1597277 | NA | non-coding | upstream | 26385 | 17907417 ~ 17907931 (+) |
| G1597263 | LOC106609911 | non-coding | upstream | 35389 | 17893485 ~ 17898927 (+) |
| G1597251 | NA | non-coding | upstream | 72365 | 17861678 ~ 17861951 (+) |
| G1597246 | NA | non-coding | upstream | 82166 | 17851942 ~ 17852150 (+) |
| G1597245 | LOC106592462 | non-coding | upstream | 82557 | 17848349 ~ 17851759 (+) |
| G1597307 | NA | non-coding | downstream | 28596 | 17964930 ~ 17966176 (+) |
| G1597334 | NA | non-coding | downstream | 69918 | 18006252 ~ 18006457 (+) |
| G1597295 | NA | non-coding | downstream | 71389 | 18007723 ~ 18018250 (+) |
| G1597336 | NA | non-coding | downstream | 89196 | 18025530 ~ 18032904 (+) |
| G1597341 | LOC106572245 | non-coding | downstream | 102018 | 18038352 ~ 18043336 (+) |
| G1594955 | NA | other | upstream | 1160607 | 16765543 ~ 16773709 (+) |
| G1594895 | NA | other | upstream | 1256194 | 16675609 ~ 16678122 (+) |
| G1594737 | LOC106610136 | other | upstream | 1497949 | 16434453 ~ 16436367 (+) |
| G1594292 | LOC106610101 | other | upstream | 1650113 | 16279290 ~ 16284203 (+) |
| G1597342 | LOC106609914 | other | downstream | 107077 | 18043411 ~ 18104592 (+) |
| G1598786 | NA | other | downstream | 1096551 | 19032885 ~ 19033176 (+) |
| LOC110497472 | LOC106609985 | other | downstream | 1390094 | 19326377 ~ 19328349 (+) |
| G1598960 | NA | other | downstream | 1395407 | 19331741 ~ 19332220 (+) |
