LOC110497458 (LOC100135888)


Basic Information

Item Value
gene id LOC110497458
gene name LOC100135888
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 18161097 ~ 18218659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573568.2
ACTGTTTTTCCCTCTTTCGGGCGCTGAGAGGCAGCATTAGGCTACCACTTACCCGTCACCACCCAAGACAGGCTCACTGTAATAACACAATGTTAACATGGGAAGGTTTGGAGTTGCCTCTGAATGTCACATACCAACAATGTGATGCGTACACATATAGCCATGTACGTCTAGACTCTGACACGCGAGCATTGTGACTAGAAGGATAAACAGAAGGTTGTCTACGGGAGCTATAAACGGGCAATATGGAGAGGAGGAAAGTCACGGGAGAATACCACGGCATCCCTGTATCCAAAATGTAGACTACATTTTATGGGACGGGCGGCACGTTTACTTCGCTAATTGGAAAAGTTACAAAATATACAATGATTATCAATGGGTCTTATCTGAACAGGTCGTCGCTGGACCCGTACGAGGAAGTGCTGAATCGCCCTCCGTGGGTTACTACAACTTTGGGGTGCTTCCTCATATTCACTATCGTGGTTGATATTTTGGGCAACCTTTTGGTGATATTCTCTGTCTACCGGAATAAGAAGCTAAGGAATGCAGgcAACATCTTTGTGGTAAGCCTGGCTGTGGCCGACCTGGTGGTGGCCATCTACCCCTACCCTCTTGTCCTCACCTCCATCTTCCACAAAGGCTGGAACCTGGGCTATGTCCACTGCCAGATCAGCGGTTTTCTCATGGGCGTCAGCGTCATTGGCTCCATCTTCAACATCACCGGCATTGCCATCAACCGCTACTGTTATATATGTCACAGCCTTAAGTACGACAAGCTGTACAGTGACAAGAACTCAGTGTGTTACGTCCTACTCATCTGGGCATTGACCATTGTGGCCATCGTGCCGAATCTCTTCGTGGGTTCGTTGCAGTACGACCCCAGGGTGTATTCGTGTACGTTCGAGCAGTCGGCGAGTTCGGCATACACTATCGCCGTGGTCTTCTTCCACTTCATCCTACCGATCATGATCGTCACCTACTGCTACCTGAGGATCTGGATCCTGGTCATTCAAGTTAGGCGACGGGTCAAACCGGACAATAGACCAAAACTGACGCCAAACGACGTGAGGAACTTCGTGACTATGTTTGTGGTGTTTGTGCTGTTCGCCGTGTGCTGGGCACCGCTCAACTTCATCGGGCTGGCGGTGGCCATCAACCCAGAGGTGGTGGTGCCTCTCATCCCCGAGTGGCTCTTCGTGGCGAGCTACTTCATGGCCTACTTCAACAGCTGCCTTAATGCCATCGTGTACGGGATGCTCAACCAGAACTTCCGGCGCGAGTACAAGCGCATCGTGGTATCGGTGTGCACAGCGCGAATCTTCTTCCACGGCAGCTCCAATGATGCGGCCGAGCGGCTCAAGAGCAAGCCTTCACCGCTCATCACCAACAACAACCAAGTCAAGGTGGAGTCGGTGTGAGAGGACCAGCTGGTCCCAGtgccctccctacccctcccccatGGCGCGAACCCTTCGATGTCTATACATCTGTAAAGTGGAAACCAGCAATATGGCGGAAGCTCAAGCTTCACCATTTCGCTCCTTGTACCTATCCAGTACACTGCAGATCTATAAACATCGGAGGGGTAAAGGAGCCCAGGGGAAGGGGTAGGGAGCGATTTGGGACTGGGTGATActaacacatagacacacacatggacaaagggggaggggggattaAGGGAACCAATGTGACATAAAATAGTTAAATTAGTTTTAAAAATACAAGTGAACGGAGAAAAATTTCCAAATACAAAAAACCTTCCACTTTCCGGACCGTCCGTGATCTGTGCTATCTTCACCTCTATACAATCAAAGCGAAATGGGGTAAATGTATCTGTCTTTTGCAAAAATCACTTTTGTTAGTTTTTTTCGATACCTAAAAAGATATAATGTACTTTGTTTTCATGTTTACAGTGATGATAACAGTGACTCTATGTAAGacgtatatgtttttattttgtatgAAGTATATGTTATATAGATATACAAGAATATATATCAGATTCATTTCACCAACATCGATAATCCGATGAAAGAAAATGACTAGGGTTGTAAAATTCCTGTAATTACTCAAAAGTTCCTGGGTTTTTCAGAAATTCCAGTTGGAATattcccagaatcaggagggaataaacaGGAACCTTCCAACCAAGATTTATGGAAAACTGGGAACATTTGTGGAGTTCCCTGAATTTTGCAAACCTACAAATGACAAATATATCATGCCATGAAATCCAGAACATTTCTGCAATGTCTGGTCACAGACATAACCAAAAGTGTTTTACAGATTTTTACTGATGTTAATGATCATTTTTGTTGGGGTGTGACACTGTTACACTCCTTCCTTTGGAGGAGGAAGCAATATGTTTGGATTGCTGCTTGTTTCACAATGCCCTGCGGAACTGTTTCCATCGTTTGGTGGAATAAATATGTTTTGTAAGCATGGGA

Function

NR:

description
melatonin receptor Mel1a

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008502 melatonin receptor activity molecular_function

KEGG:

id description
K04285 MTNR1A; melatonin receptor type 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573568.2 True 2450 mRNA 0.46 2 18161097 18218659
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498558 LOC106609924 coding upstream 198976 17956507 ~ 17962121 (+)
LOC110497454 LOC106609867 coding upstream 219552 17937002 ~ 17941545 (+)
LOC110497453 lrat coding upstream 224763 17934316 ~ 17936334 (+)
LOC110497449 LOC106609909 coding upstream 317337 17806915 ~ 17843760 (+)
LOC110497448 LOC106609908 coding upstream 411331 17740434 ~ 17749766 (+)
LOC118941462 NA coding downstream 584068 18802727 ~ 18815594 (+)
LOC118941552 NA coding downstream 619893 18838552 ~ 18838607 (+)
LOC110497463 LOC106609940 coding downstream 905050 19123709 ~ 19141362 (+)
LOC110497461 LOC106609942 coding downstream 924511 19143170 ~ 19147993 (+)
LOC110497464 NA coding downstream 976158 19194817 ~ 19196577 (+)
G1597649 NA non-coding upstream 6376 18154468 ~ 18154721 (+)
G1597634 NA non-coding upstream 21743 18139087 ~ 18139354 (+)
G1597628 NA non-coding upstream 25702 18135176 ~ 18135395 (+)
G1597626 NA non-coding upstream 27379 18133394 ~ 18133718 (+)
G1597602 NA non-coding upstream 55153 18105611 ~ 18105944 (+)
G1597734 NA non-coding downstream 12327 18230986 ~ 18231193 (+)
G1597849 NA non-coding downstream 99693 18318352 ~ 18318610 (+)
G1597962 NA non-coding downstream 239652 18458311 ~ 18458655 (+)
G1597966 NA non-coding downstream 248629 18467288 ~ 18467511 (+)
G1597976 NA non-coding downstream 273899 18492558 ~ 18493575 (+)
G1597342 LOC106609914 other upstream 56505 18043411 ~ 18104592 (+)
G1597295 NA other upstream 144057 18007723 ~ 18018250 (+)
pold4 pold4 other upstream 537624 17621396 ~ 17623478 (+)
G1594955 NA other upstream 1387388 16765543 ~ 16773709 (+)
G1594895 NA other upstream 1482975 16675609 ~ 16678122 (+)
G1598786 NA other downstream 814226 19032885 ~ 19033176 (+)
LOC110497472 LOC106609985 other downstream 1107769 19326377 ~ 19328349 (+)
G1598960 NA other downstream 1113082 19331741 ~ 19332220 (+)
G1598961 LOC107681197 other downstream 1114361 19333020 ~ 19333450 (+)
G1599186 NA other downstream 1173632 19392291 ~ 19418517 (+)

Expression

LOC110497458(LOC100135888) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

LOC110497458(LOC100135888) Expression in each Bioproject

Bar chart with 15 bars.
LOC110497458(LOC100135888) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Co-expression Network