LOC110497461 (LOC106609942)


Basic Information

Item Value
gene id LOC110497461
gene name LOC106609942
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 19143170 ~ 19147993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573571.2
ACGCTCCCTCTCAAATCACGAGGAAAGAATACACTTCCGTATTTTGAAGCTGACCAGAAATCCGAAGAAGCTTTACACACAAACAACGGGACACAAGATGGATAGGTTGTGTTGTCTTTTGGTGTCCTTATCTGCAGTATCGGCACAGTTTGTGCCACCGTATACCGAAGAATGCCAGACGGGCATGTACCCTCCCAAAGGTCCAACATTCAAAGGGCCTGTCACCTGGTACACAATAGACCTGGATTTGCCCCCCAGCGAAAGATGGAAGCTAATCATCACTGACAAGAAAGCTGAGTTGGTCAACATGATCCAGGCTATCAAGGATTTGGCCAACGCATTTGTTCCTAGTGGGAAACTGATAGATTTGGTCGACAAGGACTTGCCTTTGATAGTGAATACCCTACCCTACCCATTCAATGAGGAAATAAAAGGAGTCGCGACTGCCTCGGGTGTTCCCCTTGGCGAGGTTGTCCTCTACAACATCTTCTATGAGATCTTTACAGTGTGCACTTCTCTAGTGGCAGAGGACTCAAATGGTAACCTTATCCATGGGCGGAATATGGACTTTGGACTATTCATGGGTTGGGACATGAAGAACAGGTCCTGGTTGATAACAGAGAAACTCAAGCCTATGGTGGTCAACATTGACTTCCAGAGAGGCAACAAGACGGTCTTCAAGTCCACTAACTTCGCCGGCTACGTGGGCATGTTGACCGGTATCAAACCGCATGCTTTCACTCTGACCATGAATGAGCGCTTCAGCCTCGATGGAGGATACATCGggatcGTGGAGTGGATCCTGGGGAAAAGAGATGGGATGTGGATGAGCTTCCTCACTCGCTCTGTCTTAGAGAATGCTACCAGCTACGAGGCGGCAAAGAACCTTCTGGCCCAGACCAAGCTGCTGGCCCCGGCCTACTTCATCCTGGGAGGGAACCAGACGGGCCAGGGCTGTGTCATCACCCGCTCCAGAGTCCTCAGCCTCGACATCTGGGAGATTGAGCTGAAGCTGGGCCGCTGGTACGTTCTGGAAACCAACTACGATCACTGGAAGGAGCCTCTGTTCTTGGACAACCGCAGGACTCCAGCCATGAAGTGTATGAACCAGACCACGCAGGCAAACATCTCACTGAAGACCGTGTACGACGTGCTGTCGACAAAACCAGTCTTGAACAAGTTGACCACATACACCACGTTGATGGACGTGAACAAGGGCAAACTGGAATCCTACATCCGTGACTGCCCCAACCCCTGTATGCCCTGGTGAAGCCTCCAAATGGGTTTCTAACAGAACGGTGGTGGGGAGATGGGCTTAACTGATTCAGAAACAACTGGAGAATCCTGTTGTACATATTTCAAGTCTTTGCGCTGTAACTAAAGGCTCCAATCGAAATATTGCCTCAACATTGCTTAACCCTCATACatgggttgaaaatggcagatttgggcactgTTAAGCACCAAAATTGGAACAGTGGGCTGAACATGTCAGAGATCACGTTCTCTGAACTTGAGCATTACGCAACAAAGTTGCCTTCCCAGTAATTGGGCAACTTTGTCTGAGTgagaaatgctgtaaattaagaggactctatgtattttgaaagatgacaGGGGATTATAATTAATACCACTTTGTCATACAAGCAACCCAAATGTGCACTTTACATTTCCAaaatcataaaactcatgtctaTACAGTGCCAAATGTTTATGATCACGGCTTGATGTACAGTTAAGATGTAATGTCATACCCTTGGTTTTCCTGAAAAAATTGAGCCCATTTGAATTTGTTTTGCTGCCGACTCCTTTCTATGCGCAGCAAAATTACAATgtctgaattgccttgtgaaagtGTAACATGTCTTCCCACTGGATGTATCTGGAGTTATTTGTATTACCAAAATCTACACACATCAAATGCAAATCATGTGTAAAATTTGGATTCAGTTGAACTTGTGTACTCCCTTTGGTCTAATAAATTCCACACAGTTCCCTTTCAA
>XR_005037676.1
ACGCTCCCTCTCAAATCACGAGGAAAGAATACACTTCCGTATTTTGAAGCTGACCAGAAATCCGAAGAAGCTTTACACACAAACAACGGGACACAAGATGGATAGGTTGTGTTGTCTTTTGGTGTCCTTATCTGCAGTATCGGCACAGTTTGTGCCACCGTATACCGAAGAATGCCAGACGGGCATGTACCCTCCCAAAGGTCCAACATTCAAAGGGCCTGTCACCTGGTACACAATAGACCTGGATTTGCCCCCCAGCGAAAGATGGAAGCTAATCATCACTGACAAGAAAGCTGAGTTGGTCAACATGATCCAGGCTATCAAGGATTTGGCCAACGCATTTGTTCCTAGTGGGAAACTGATAGATTTGGTCGACAAGGACTTGCCTTTGATAGTGAATACCCTACCCTACCCATTCAATGAGGAAATAAAAGGAGTCGCGACTGCCTCGGGTGTTCCCCTTGGCGAGGTTGTCCTCTACAACATCTTCTATGAGATCTTTACAGTGTGCACTTCTCTAGTGGCAGAGGACTCAAATGGTAACCTTATCCATGGGCGGAATATGGACTTTGGACTATTCATGGGTTGGGACATGAAGAACAGGTCCTGGTTGATAACAGAGAAACTCAAGCCTATGGTGGTCAACATTGACTTCCAGAGAGGCAACAAGACGGTCTTCAAGTCCACTAACTTCGCCGGCTACGTGGGCATGTTGACCGGTATCAAACCGCATGCTTTCACTCTGACCATGAATGAGCGCTTCAGCCTCGATGGAGGATACATCGggatcGTGGAGTGGATCCTGGGGAAAAGAGATGGGATGTGGATGAGCTTCCTCACTCGCTCTGTCTTAGAGAATGCTACCAGCTACGAGGCGGCAAAGAACCTTCTGGCCCAGACCAAGCTGCTGGCCCCGGCCTACTTCATCCTGGGAGGGAACCAGACGGGCCAGGGCTGTGTCATCACCCGCTCCAGAGTCCTCAGCCTCGACATCTGGGAGATTGAGCTGAAGCTGGGCCGCTGGTACGTTCTGGAAACCAACTACGATCACTGGAAGGAGCCTCTGTTCTTGGACAACCGCAGGACTCCAGCCATGAAGTGTATGAACCAGACCACGCAGGCAAACATCTCACTGAAGACCGTGTACGACGTGCTGTCGACAAAACCAGTCTTGAACAAGTTGACCACATACACCACGTTGATGGACGTGAACAAGGGCAAACTGGAATCCTACATCCGTGACTGCCCCAACCCCTGTATGCCCTGGTGAAGCCTCCAAATGGGTTTCTAACAGAACGGTGGTGGGGAGATGGGCTTAACTGATTCAGAAACAACTGGAGAATCCTGTTGTACATATTTCAAGTCTTTGCGCTGTAACTAAAGGCTCCAATCGAAATATTGCCTCAACATTGCTTAACCCTCATACatgggttgaaaatggcagatttgggcactgTTAAGCACCAAAATTGGAACAgtctaTACAGTGCCAAATGTTTATGATCACGGCTTGATGTACAGTTAAGATGTAATGTCATACCCTTGGTTTTCCTGAAAAAATTGAGCCCATTTGAATTTGTTTTGCTGCCGACTCCTTTCTATGCGCAGCAAAATTACAATgtctgaattgccttgtgaaagtGTAACATGTCTTCCCACTGGATGTATCTGGAGTTATTTGTATTACCAAAATCTACACACATCAAATGCAAATCATGTGTAAAATTTGGATTCAGTTGAACTTGTGTACTCCCTTTGGTCTAATAAATTCCACACAGTTCCCTTTCAA

Function

NR:

description
acid ceramidase-like

GO: NA

KEGG:

id description
K12348 ASAH1; acid ceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573571.2 False 2006 mRNA 0.46 14 19143170 19147993
XR_005037676.1 True 1789 mRNA 0.47 15 19143170 19147993
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497463 LOC106609940 coding upstream 1808 19123709 ~ 19141362 (+)
LOC118941552 NA coding upstream 304563 18838552 ~ 18838607 (+)
LOC118941462 NA coding upstream 327576 18802727 ~ 18815594 (+)
LOC110497458 LOC100135888 coding upstream 924511 18161097 ~ 18218659 (+)
LOC110498558 LOC106609924 coding upstream 1181049 17956507 ~ 17962121 (+)
LOC110497464 NA coding downstream 46824 19194817 ~ 19196577 (+)
LOC110497465 LOC106609944 coding downstream 55086 19203079 ~ 19218829 (+)
LOC110497468 glb1 coding downstream 73367 19221360 ~ 19226420 (+)
LOC110497470 LOC106609950 coding downstream 145890 19293883 ~ 19302874 (+)
LOC110497472 LOC106609985 coding downstream 178384 19326377 ~ 19328349 (+)
G1598851 NA non-coding upstream 21817 19121129 ~ 19121353 (+)
G1598787 NA non-coding upstream 109220 19033689 ~ 19033950 (+)
G1598785 NA non-coding upstream 110424 19032471 ~ 19032746 (+)
G1598773 NA non-coding upstream 114818 19023962 ~ 19028352 (+)
G1598455 NA non-coding upstream 353941 18788998 ~ 18789229 (+)
G1598816 NA non-coding downstream 413 19148406 ~ 19148773 (+)
G1598888 NA non-coding downstream 41888 19189881 ~ 19190153 (+)
G1598943 NA non-coding downstream 141534 19289527 ~ 19289826 (+)
G1598947 NA non-coding downstream 152896 19300889 ~ 19301558 (+)
LOC110497473 NA non-coding downstream 195162 19343155 ~ 19358450 (+)
G1598786 NA other upstream 109994 19032885 ~ 19033176 (+)
G1597342 LOC106609914 other upstream 1038578 18043411 ~ 18104592 (+)
G1597295 NA other upstream 1126130 18007723 ~ 18018250 (+)
pold4 pold4 other upstream 1519697 17621396 ~ 17623478 (+)
G1594955 NA other upstream 2369461 16765543 ~ 16773709 (+)
G1598960 NA other downstream 183748 19331741 ~ 19332220 (+)
G1598961 LOC107681197 other downstream 185027 19333020 ~ 19333450 (+)
G1599186 NA other downstream 244298 19392291 ~ 19418517 (+)
LOC110497530 cdk2ap2 other downstream 575062 19722973 ~ 19729929 (+)

Expression

LOC110497461(LOC106609942) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110497461(LOC106609942) Expression in each Bioproject

Bar chart with 21 bars.
LOC110497461(LOC106609942) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network