Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497471 |
| gene name | LOC106609951 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 19303531 ~ 19310735 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| claudin domain-containing protein 1-like |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036954405.1 | False | 3484 | mRNA | 0.44 | 5 | 19303531 | 19310361 |
| XM_036954408.1 | False | 3463 | mRNA | 0.44 | 5 | 19303531 | 19310361 |
| XM_036954409.1 | False | 3466 | mRNA | 0.44 | 5 | 19303531 | 19310361 |
| XM_036954412.1 | False | 3305 | mRNA | 0.45 | 6 | 19303531 | 19310363 |
| XM_036954413.1 | False | 3302 | mRNA | 0.45 | 6 | 19303531 | 19310363 |
| XM_021573592.2 | False | 3462 | mRNA | 0.44 | 5 | 19303531 | 19310735 |
| XM_021573593.2 | False | 3441 | mRNA | 0.44 | 5 | 19303531 | 19310735 |
| XM_036954406.1 | False | 3444 | mRNA | 0.44 | 5 | 19303531 | 19310735 |
| XM_036954407.1 | False | 3299 | mRNA | 0.44 | 6 | 19303531 | 19310735 |
| XM_036954410.1 | False | 3278 | mRNA | 0.44 | 6 | 19303531 | 19310735 |
| XM_036954411.1 | True | 3281 | mRNA | 0.44 | 6 | 19303531 | 19310735 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497469 | LOC106609949 | coding | downstream | 32873 | 19253372 ~ 19270658 (-) |
| LOC110497466 | LOC106609946 | coding | downstream | 74765 | 19219134 ~ 19228766 (-) |
| LOC110497460 | LOC106609941 | coding | downstream | 119347 | 19148402 ~ 19184184 (-) |
| LOC110497459 | LOC106609939 | coding | downstream | 724138 | 18475396 ~ 18579393 (-) |
| LOC118941355 | NA | coding | downstream | 1153812 | 18146158 ~ 18149719 (-) |
| LOC110497474 | NA | coding | upstream | 53956 | 19364691 ~ 19368647 (-) |
| LOC118941463 | NA | coding | upstream | 64070 | 19374805 ~ 19377156 (-) |
| LOC118941546 | NA | coding | upstream | 87033 | 19397768 ~ 19420467 (-) |
| LOC110497535 | LOC106602669 | coding | upstream | 206527 | 19517262 ~ 19524270 (-) |
| LOC110498562 | NA | coding | upstream | 214371 | 19525106 ~ 19535210 (-) |
| G1599137 | NA | non-coding | downstream | 11294 | 19292032 ~ 19292237 (-) |
| G1599131 | NA | non-coding | downstream | 23660 | 19279562 ~ 19279871 (-) |
| G1599076 | NA | non-coding | downstream | 114512 | 19188781 ~ 19189019 (-) |
| G1599064 | NA | non-coding | downstream | 160782 | 19142523 ~ 19142749 (-) |
| G1598733 | NA | non-coding | downstream | 292133 | 18973765 ~ 19011398 (-) |
| G1599146 | NA | non-coding | upstream | 4103 | 19314838 ~ 19316046 (-) |
| G1599147 | NA | non-coding | upstream | 5503 | 19316238 ~ 19316632 (-) |
| G1599133 | LOC106609985 | non-coding | upstream | 15591 | 19326326 ~ 19328350 (-) |
| G1599154 | NA | non-coding | upstream | 21034 | 19331769 ~ 19332310 (-) |
| G1599167 | NA | non-coding | upstream | 37415 | 19348150 ~ 19348623 (-) |
| G1599097 | LOC106609944 | other | downstream | 93567 | 19209292 ~ 19209964 (-) |
| G1598418 | NA | other | downstream | 539109 | 18763715 ~ 18764422 (-) |
| LOC110497446 | NA | other | downstream | 1680055 | 17615897 ~ 17623476 (-) |
| G1596970 | LOC106609899 | other | downstream | 1804088 | 17494669 ~ 17530745 (-) |
| G1596940 | NA | other | downstream | 1865653 | 17437664 ~ 17437878 (-) |
| G1599197 | NA | other | upstream | 61574 | 19372309 ~ 19381751 (-) |
| G1599717 | NA | other | upstream | 244862 | 19555597 ~ 19557357 (-) |
| G1599760 | LOC106609957 | other | upstream | 325283 | 19636018 ~ 19637027 (-) |
| G1599758 | LOC106609957 | other | upstream | 328025 | 19638760 ~ 19642003 (-) |
| G1600014 | LOC106609977 | other | upstream | 797180 | 20107915 ~ 20108791 (-) |
